메뉴 건너뛰기




Volumn 15, Issue 2, 2012, Pages 40-61

Development of cDNA-derived SSR markers and their efficiency in diversity assessment of Cymbidium accessions

Author keywords

cDNA library; Cymbidium; Enriched library; Molecular diversity; SSR

Indexed keywords

ALLELE NUMBER; CDNA LIBRARIES; CORE SET; CYMBIDIUM; FLOWERING PLANTS; GENE DIVERSITY; GENETIC DIVERSITY; GENOMIC DNA; GENOMIC LIBRARIES; GERMPLASMS; MARKER-ASSISTED SELECTION; MOLECULAR DIVERSITY; POLYMORPHIC DNA; SSR; SSR MARKERS;

EID: 84863348117     PISSN: None     EISSN: 07173458     Source Type: Journal    
DOI: 10.2225/vol15-issue2-fulltext-4     Document Type: Article
Times cited : (4)

References (41)
  • 1
    • 33947323124 scopus 로고    scopus 로고
    • Association mapping of yield and its components in rice cultivars
    • [CrossRef]
    • AGRAMA, H.; EIZENGA, G. and YAN, W. (2007). Association mapping of yield and its components in rice cultivars. Molecular Breeding, vol. 19, no. 4, p. 341-356. [CrossRef] ARDITTI, J. (1992). Classification and naming of orchids. Fundamentals of orchid biology. John Wiley & Sons, New York, 704 p. ISBN 0-471-54906-1.
    • (2007) Molecular Breeding , vol.19 , Issue.4 , pp. 341-356
    • Agrama, H.1    Eizenga, G.2    Yan, W.3
  • 2
    • 57149095764 scopus 로고
    • Classification and naming of orchids
    • John Wiley & Sons, New York, ISBN 0-471-54906-1
    • ARDITTI, J. (1992). Classification and naming of orchids. Fundamentals of orchid biology. John Wiley & Sons, New York, 704 p. ISBN 0-471-54906-1
    • (1992) Fundamentals of orchid biology , pp. 704
    • Arditti, J.1
  • 4
    • 79953109176 scopus 로고    scopus 로고
    • Gene-based SSR markers for common bean (Phaseolus vulgaris L.) derived from root and leaf tissue ESTs: An integration of the BMc series
    • [CrossRef]
    • BLAIR, M.W.; HURTADO, N.; CHAVARRO, C.M.; MUNOZ-TORRES, M.C.; GIRALDO, M.C.; PEDRAZA, F.; TOMKINS, J. and WING, R. (2011). Gene-based SSR markers for common bean (Phaseolus vulgaris L.) derived from root and leaf tissue ESTs: An integration of the BMc series. BMC Plant Biology, vol. 11, p. 50. [CrossRef]
    • (2011) BMC Plant Biology , vol.11 , pp. 50
    • Blair, M.W.1    Hurtado, N.2    Chavarro, C.M.3    Munoz-Torres, M.C.4    Giraldo, M.C.5    Pedraza, F.6    Tomkins, J.7    Wing, R.8
  • 5
    • 84863357346 scopus 로고    scopus 로고
    • Ginseng cDNA library construction, EST and gene expression analysis and EST-SSR Marker
    • CHENGJUN, Y.; JUN, W. and QIANG, M.L. (2008). Ginseng cDNA library construction, EST and gene expression analysis and EST-SSR Marker. Niubiao, vol. 11, p. 14.
    • (2008) Niubiao , vol.11 , pp. 14
    • Chengjun, Y.1    Jun, W.2    Qiang, M.L.3
  • 6
    • 77957084890 scopus 로고    scopus 로고
    • Development and characterization of twenty-five new polymorphic microsatellite markers in proso millet (Panicum miliaceum L.)
    • [CrossRef]
    • CHO, Y.I.; CHUNG, J.W.; LEE, G.A.; MA, K.H.; DIXIT, A.; GWAG, J.G. and PARK, Y.J. (2010). Development and characterization of twenty-five new polymorphic microsatellite markers in proso millet (Panicum miliaceum L.). Genes & Genomics, vol. 32, no. 3, p. 267-273. [CrossRef]
    • (2010) Genes & Genomics , vol.32 , Issue.3 , pp. 267-273
    • Cho, Y.I.1    Chung, J.W.2    Lee, G.A.3    Ma, K.H.4    Dixit, A.5    Gwag, J.G.6    Park, Y.J.7
  • 7
    • 33644535124 scopus 로고    scopus 로고
    • Genetic diversity and phylogenetic relationships among and within species of oriental cymbidiums based on RAPD analysis
    • [CrossRef]
    • CHOI, S.; KIM, M.; LEE, J. and RYU, K. (2006). Genetic diversity and phylogenetic relationships among and within species of oriental cymbidiums based on RAPD analysis. Scientia Horticulturae, vol. 108, no. 1, p. 79-85. [CrossRef]
    • (2006) Scientia Horticulturae , vol.108 , Issue.1 , pp. 79-85
    • Choi, S.1    Kim, M.2    Lee, J.3    Ryu, K.4
  • 8
    • 33244479860 scopus 로고    scopus 로고
    • Development of polymorphic microsatellite markers in sesame (Sesamum indicum L.)
    • [CrossRef]
    • DIXIT, A.; JIN, M.-H.; CHUNG, J.-W.; YU, J.-W.; CHUNG, H.-K.; MA, K.-H.; PARK, Y.-J. and CHO, E.-G. (2005). Development of polymorphic microsatellite markers in sesame (Sesamum indicum L.). Molecular Ecology Notes, vol. 5, no. 4, p. 736-738. [CrossRef] DE CAMPOS, T.; BENCHIMOL, L.L.; CARBONELL, S.A.M.; CHIORATTO, A.F.; FORMIGHIERI, E.F. and DE SOUZA, A.P. (2007). Microsatellites for genetic studies and breeding programs in common bean. Pesquisa Agropecuaria Brasileira, vol. 42, no. 4. [CrossRef]
    • (2005) Molecular Ecology Notes , vol.5 , Issue.4 , pp. 736-738
    • Dixit, A.1    Jin, M.-H.2    Chung, J.-W.3    Yu, J.-W.4    Chung, H.-K.5    Ma, K.-H.6    Park, Y.-J.7    Cho, E.-G.8
  • 10
    • 0009816479 scopus 로고
    • The Genus Cymbidium
    • Oregon, London & Timber Press, Includes SEM seeds. ISBN 9781842461471
    • DU PUY, D. and CRIBB, P. (1988). The Genus Cymbidium. Christopher Helm: Portland, Oregon, London & Timber Press, 236 p. Includes SEM seeds. ISBN 9781842461471.
    • (1988) Christopher Helm: Portland , pp. 236
    • Du Puy, D.1    Cribb, P.2
  • 11
    • 2342505729 scopus 로고    scopus 로고
    • Pyrosequencing: A tool for DNA sequencing analysis
    • [CrossRef]
    • ELAHI, E. and RONAGHI, M. (2004). Pyrosequencing: A tool for DNA sequencing analysis. Bacterial Artificial Chromosomes, vol. 255, p. 211-219. [CrossRef]
    • (2004) Bacterial Artificial Chromosomes , vol.255 , pp. 211-219
    • Elahi, E.1    Ronaghi, M.2
  • 14
    • 0034094869 scopus 로고    scopus 로고
    • The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat
    • [CrossRef]
    • GUPTA, P. and VARSHNEY, R. (2000). The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat. Euphytica, vol. 113, no. 3, p. 163-185. [CrossRef]
    • (2000) Euphytica , vol.113 , Issue.3 , pp. 163-185
    • Gupta, P.1    Varshney, R.2
  • 17
    • 84863338283 scopus 로고    scopus 로고
    • Isolation and characterization of 15 microsatellite markers from the spring orchid (Cymbidium goeringii) (Orchidaceae)
    • [CrossRef]
    • HUANG, J.L.; ZENG, C.X.; LI, H.T. and YANG, J.B. (2011). Isolation and characterization of 15 microsatellite markers from the spring orchid (Cymbidium goeringii) (Orchidaceae). American Journal of Botany, vol. 98, no. 4, p. e76-e77. [CrossRef]
    • (2011) American Journal of Botany , vol.98 , Issue.4
    • Huang, J.L.1    Zeng, C.X.2    Li, H.T.3    Yang, J.B.4
  • 18
    • 74549135281 scopus 로고    scopus 로고
    • Transcriptome sequencing with the Genome Sequencer FLX system
    • JARVIE, T. and HARKINS, T. (2008). Transcriptome sequencing with the Genome Sequencer FLX system. Nature Methods, vol. 5, no. 9.
    • (2008) Nature Methods , vol.5 , Issue.9
    • Jarvie, T.1    Harkins, T.2
  • 19
    • 60449114951 scopus 로고    scopus 로고
    • Development and genetic mapping of SSR markers in foxtail millet [Setaria italica (L.) P. Beauv.]
    • [CrossRef]
    • JIA, X.; ZHANG, Z.; LIU, Y.; ZHANG, C.; SHI, Y.; SONG, Y.; WANG, T. and LI, Y. (2009). Development and genetic mapping of SSR markers in foxtail millet [Setaria italica (L.) P. Beauv.]. TAG Theoretical and Applied Genetics, vol. 118, no. 4, p. 821-829. [CrossRef]
    • (2009) TAG Theoretical and Applied Genetics , vol.118 , Issue.4 , pp. 821-829
    • Jia, X.1    Zhang, Z.2    Liu, Y.3    Zhang, C.4    Shi, Y.5    Song, Y.6    Wang, T.7    Li, Y.8
  • 21
    • 84863374633 scopus 로고    scopus 로고
    • Strategies of Construction of cDNA Library and Its Application
    • JUN, Y.C.W. (2007). Strategies of Construction of cDNA Library and Its Application. Biotechnology Bulletin, no. 1.
    • (2007) Biotechnology Bulletin , Issue.1
    • Jun, Y.C.W.1
  • 23
    • 18744382780 scopus 로고    scopus 로고
    • PowerMarker: An integrated analysis environment for genetic marker analysis
    • [CrossRef]
    • LIU, K. and MUSE, S.V. (2005). PowerMarker: An integrated analysis environment for genetic marker analysis. Bioinformatics, vol. 21, no. 9, p. 2128-2129. [CrossRef]
    • (2005) Bioinformatics , vol.21 , Issue.9 , pp. 2128-2129
    • Liu, K.1    Muse, S.V.2
  • 26
    • 13444279930 scopus 로고    scopus 로고
    • Genetic diversity of peanut (Arachis hypogaea L.) and its wild relatives based on the analysis of hypervariable regions of the genome
    • [CrossRef]
    • MORETZSOHN, M.C.; HOPKINS, M.S.; MITCHELL, S.E.; KRESOVICH, S.; VALLS, J.F.M. and FERREIRA, M.E. (2004). Genetic diversity of peanut (Arachis hypogaea L.) and its wild relatives based on the analysis of hypervariable regions of the genome. BMC Plant Biology, vol. 4, no. 11. [CrossRef]
    • (2004) BMC Plant Biology , vol.4 , Issue.11
    • Moretzsohn, M.C.1    Hopkins, M.S.2    Mitchell, S.E.3    Kresovich, S.4    Valls, J.F.M.5    Ferreira, M.E.6
  • 27
    • 0031905454 scopus 로고    scopus 로고
    • Genetic diversity and identification of cymbidium cultivars as measured by random amplified polymorphic DNA (RAPD) markers
    • [CrossRef]
    • OBARA-OKEYO, P. and KAKO, S. (1998). Genetic diversity and identification of cymbidium cultivars as measured by random amplified polymorphic DNA (RAPD) markers. Euphytica, vol. 99, no. 2, p. 95-101. [CrossRef]
    • (1998) Euphytica , vol.99 , Issue.2 , pp. 95-101
    • Obara-Okeyo, P.1    Kako, S.2
  • 28
    • 2542504659 scopus 로고    scopus 로고
    • Characterization of microsatellite markers in sycamore (Acer pseudoplatanus L.)
    • [CrossRef]
    • PANDEY, M.; GAILING, O.; FISCHER, D.; HATTEMER, H. and FINKELDEY, R. (2004). Characterization of microsatellite markers in sycamore (Acer pseudoplatanus L.). Molecular Ecology Notes, vol. 4, no. 2, p. 253-255. [CrossRef]
    • (2004) Molecular Ecology Notes , vol.4 , Issue.2 , pp. 253-255
    • Pandey, M.1    Gailing, O.2    Fischer, D.3    Hattemer, H.4    Finkeldey, R.5
  • 29
    • 77951894310 scopus 로고    scopus 로고
    • Transcriptome sequencing in an ecologically important tree species: Assembly, annotation, and marker discovery
    • [CrossRef]
    • PARCHMAN, T.L.; GEIST, K.S.; GRAHNEN, J.A.; BENKMAN, C.W. and BUERKLE, C.A. (2010). Transcriptome sequencing in an ecologically important tree species: Assembly, annotation, and marker discovery. BMC Genomics, vol. 11, no. 180. [CrossRef]
    • (2010) BMC Genomics , vol.11 , Issue.180
    • Parchman, T.L.1    Geist, K.S.2    Grahnen, J.A.3    Benkman, C.W.4    Buerkle, C.A.5
  • 30
    • 73349108803 scopus 로고    scopus 로고
    • Simple sequence repeat polymorphisms (SSRPs) for evaluation of molecular diversity and germplasm classification of minor crops
    • [CrossRef]
    • PARK, Y.J.; LEE, J.K. and KIM, N.S. (2009). Simple sequence repeat polymorphisms (SSRPs) for evaluation of molecular diversity and germplasm classification of minor crops. Molecules, vol. 14, no. 11, p. 4546-4569. [CrossRef]
    • (2009) Molecules , vol.14 , Issue.11 , pp. 4546-4569
    • Park, Y.J.1    Lee, J.K.2    Kim, N.S.3
  • 31
    • 0035153070 scopus 로고    scopus 로고
    • Pyrosequencing sheds light on DNA sequencing
    • [CrossRef]
    • RONAGHI, M. (2001). Pyrosequencing sheds light on DNA sequencing. Genome Research, vol. 11, no. 1, p. 3-11. [CrossRef]
    • (2001) Genome Research , vol.11 , Issue.1 , pp. 3-11
    • Ronaghi, M.1
  • 32
    • 0033953635 scopus 로고    scopus 로고
    • An economic method for the fluorescent labeling of PCR fragments
    • [CrossRef]
    • SCHUELKE, M. (2000). An economic method for the fluorescent labeling of PCR fragments. Nature Biotechnology, vol. 18, no. 2, p. 233-234. [CrossRef]
    • (2000) Nature Biotechnology , vol.18 , Issue.2 , pp. 233-234
    • Schuelke, M.1
  • 33
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
    • [CrossRef]
    • TAMURA, K.; DUDLEY, J.; NEI, M. and KUMAR, S. (2007). MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evolution, vol. 24, no. 8, p. 1596-1599. [CrossRef]
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 34
    • 80052511335 scopus 로고    scopus 로고
    • Development of expressed sequence tag resources for Vanda Mimi Palmer and data mining for EST-SSR
    • [CrossRef]
    • TEH, S.L.; CHAN, W.S.; ABDULLAH, J.O. and NAMASIVAYAM, P. (2010). Development of expressed sequence tag resources for Vanda Mimi Palmer and data mining for EST-SSR. Molecular Biology Reports, vol. 38, no. 6, p. 3903-3909. [CrossRef]
    • (2010) Molecular Biology Reports , vol.38 , Issue.6 , pp. 3903-3909
    • Teh, S.L.1    Chan, W.S.2    Abdullah, J.O.3    Namasivayam, P.4
  • 35
    • 0033858199 scopus 로고    scopus 로고
    • Microsatellites in different eukaryotic genomes: Survey and analysis
    • [CrossRef]
    • TOTH, G.; GASPARI, Z. and JURKA, J. (2000). Microsatellites in different eukaryotic genomes: Survey and analysis. Genome Research, vol. 10, no. 7, p. 967-981. [CrossRef]
    • (2000) Genome Research , vol.10 , Issue.7 , pp. 967-981
    • Toth, G.1    Gaspari, Z.2    Jurka, J.3
  • 36
    • 0142063998 scopus 로고    scopus 로고
    • Development of microsatellite markers in Primula sieboldii E. Morren, a threatened Japanese perennial herb
    • [CrossRef]
    • UENO, S.; TSUMURA, Y. and WASHITANI, I. (2003). Development of microsatellite markers in Primula sieboldii E. Morren, a threatened Japanese perennial herb. Conservation Genetics, vol. 4, no. 6, p. 809-811. [CrossRef]
    • (2003) Conservation Genetics , vol.4 , Issue.6 , pp. 809-811
    • Ueno, S.1    Tsumura, Y.2    Washitani, I.3
  • 37
    • 67651083701 scopus 로고    scopus 로고
    • Molecular diversity and relationships among Cymbidium goeringii cultivars based on inter-simple sequence repeat (ISSR) markers
    • [CrossRef]
    • WANG, H.Z.; WU, Z.X.; LU, J.J.; SHI, N.N.; ZHAO, Y.; ZHANG, Z.T. and LIU, J.J. (2009). Molecular diversity and relationships among Cymbidium goeringii cultivars based on inter-simple sequence repeat (ISSR) markers. Genetica, vol. 136, no. 3, p. 391-399. [CrossRef]
    • (2009) Genetica , vol.136 , Issue.3 , pp. 391-399
    • Wang, H.Z.1    Wu, Z.X.2    Lu, J.J.3    Shi, N.N.4    Zhao, Y.5    Zhang, Z.T.6    Liu, J.J.7
  • 38
    • 52449084169 scopus 로고    scopus 로고
    • Isolation and characterization of nine microsatellite markers for Cymbidium sinense
    • XIA, K.; YE, X. and ZHANG, M. (2008). Isolation and characterization of nine microsatellite markers for Cymbidium sinense. Hortscience, vol. 43, no. 6, p. 1925-1926.
    • (2008) Hortscience , vol.43 , Issue.6 , pp. 1925-1926
    • Xia, K.1    Ye, X.2    Zhang, M.3
  • 39
    • 0036007439 scopus 로고    scopus 로고
    • Strategies for microsatellite isolation: A review
    • [CrossRef]
    • ZANE, L.; BARGELLONI, L. and PAtArNELLO, T. (2002). Strategies for microsatellite isolation: A review. Molecular Ecology, vol. 11, no. 1, p. 1-16. [CrossRef]
    • (2002) Molecular Ecology , vol.11 , Issue.1 , pp. 1-16
    • Zane, L.1    Bargelloni, L.2    Patarnello, T.3
  • 40
    • 10344262097 scopus 로고    scopus 로고
    • Isolation and characterization of microsatellite loci from the mulberry, Morus L
    • [CrossRef]
    • ZHAO, W.; MIAO, X.; JIA, S.; PAN, Y. and HUANG, Y. (2005). Isolation and characterization of microsatellite loci from the mulberry, Morus L. Plant Science, vol. 168, no. 2, p. 519-525. [CrossRef].
    • (2005) Plant Science , vol.168 , Issue.2 , pp. 519-525
    • Zhao, W.1    Miao, X.2    Jia, S.3    Pan, Y.4    Huang, Y.5
  • 41
    • 84862776861 scopus 로고    scopus 로고
    • Development and use of novel SSR markers for molecular genetic diversity in Italian millet (Setaria italica L.)
    • [CrossRef]
    • ZHAO, W.; LEE, G.A.; KWON, S.W.; MA, K.H.; LEE, M.C. and PARK, Y.J. (2012). Development and use of novel SSR markers for molecular genetic diversity in Italian millet (Setaria italica L.). Genes & Genomics, vol. 34, no. 1, p. 51-57. [CrossRef]
    • (2012) Genes & Genomics , vol.34 , Issue.1 , pp. 51-57
    • Zhao, W.1    Lee, G.A.2    Kwon, S.W.3    Ma, K.H.4    Lee, M.C.5    Park, Y.J.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.