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Volumn 38, Issue 6, 2011, Pages 3903-3909

Development of expressed sequence tag resources for Vanda Mimi Palmer and data mining for EST-SSR

Author keywords

Expressed sequence tag (EST); Orchids; Simple sequence repeat (SSR); Vanda Mimi Palmer (VMP)

Indexed keywords

FRAGRANCE;

EID: 80052511335     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-010-0506-3     Document Type: Article
Times cited : (25)

References (38)
  • 2
    • 67349167238 scopus 로고    scopus 로고
    • D-xylulose 5- phosphate reductoisomerase (DXR) transcript from Vanda Mimi Palmer
    • D-xylulose 5- phosphate reductoisomerase (DXR) transcript from Vanda Mimi Palmer. Sci Hortic 121(3):378-382.
    • (2009) Sci Hortic , vol.121 , Issue.3 , pp. 378-382
    • Chan, W.S.1    Janna, O.A.2    Parameswari, N.3    Maziah, M.4
  • 6
    • 79955097377 scopus 로고    scopus 로고
    • Data mining for simple sequence repeats in oil palm expressed sequence tags
    • Riju A, Arunachalam V (2009) Data mining for simple sequence repeats in oil palm expressed sequence tags. Nature Precedings http://hdl.handle.net/10101/ npre.2009.3581.1.
    • (2009) Nature Precedings
    • Riju, A.1    Arunachalam, V.2
  • 7
    • 30944461763 scopus 로고    scopus 로고
    • Expression analysis of the ESTs derived from the flower buds of Phalaenopsis equestris
    • DOI 10.1016/j.plantsci.2005.08.029, PII S0168945205003870
    • Tsai W, Hsiao Y, Lee S, Tung C, Wang D, Wang H, Chen W, Chen H (2006) Expression analysis of the ESTs derived from the flower buds of Phalaenopsis equestris. Plant Sci 170:426-432. (Pubitemid 43116935)
    • (2006) Plant Science , vol.170 , Issue.3 , pp. 426-432
    • Tsai, W.-C.1    Hsiao, Y.-Y.2    Lee, S.-H.3    Tung, C.-W.4    Wang, D.-P.5    Wang, H.-C.6    Chen, W.-H.7    Chen, H.-H.8
  • 8
    • 33751017957 scopus 로고    scopus 로고
    • Sequencing Medicago truncatula using 454 life sciences technology
    • Cheung F, Haas B, Goldberg S, May G, Xiao Y, Town C (2006) Sequencing Medicago truncatula using 454 life sciences technology. BMC Genomics 7:272-281.
    • (2006) BMC Genomics , vol.7 , pp. 272-281
    • Cheung, F.1    Haas, B.2    Goldberg, S.3    May, G.4    Xiao, Y.5    Town, C.6
  • 10
    • 33748575912 scopus 로고    scopus 로고
    • An expressed sequence tag (EST) library from developing fruits of an Hawaiian endemic mint (Stenogyne rugosa, Lamiaceae): Characterization and microsatellite markers
    • Lindqvist C, Scheen A, Yoo M, Grey P, Oppenheimer D, Leebens- Mack J, Soltis D, Soltis P, Albert V (2006) An expressed sequence tag (EST) library from developing fruits of an Hawaiian endemic mint (Stenogyne rugosa, Lamiaceae): characterization and microsatellite markers. BMC Plant Biol 6:16-30.
    • (2006) BMC Plant Biol , vol.6 , pp. 16-30
    • Lindqvist, C.1    Scheen, A.2    Yoo, M.3    Grey, P.4    Oppenheimer, D.5    Leebens-Mack, J.6    Soltis, D.7    Soltis, P.8    Albert, V.9
  • 11
    • 34848917832 scopus 로고    scopus 로고
    • Development and characterization of EST-SSR markers in the eastern oyster Crassostrea virginica
    • DOI 10.1007/s10126-007-9011-7
    • Wang Y, Guo X (2007) Development and characterization of EST-SSR markers in the Eastern Oyster Crassostrea virginica. Mar Biotechnol 9:500-511. (Pubitemid 47492134)
    • (2007) Marine Biotechnology , vol.9 , Issue.4 , pp. 500-511
    • Wang, Y.1    Guo, X.2
  • 12
    • 2442701496 scopus 로고    scopus 로고
    • Microsatellites within genes: Structure, function, and evolution
    • DOI 10.1093/molbev/msh073
    • Li Y, Korol A, Fahima T, Nevo E (2004) Microsatellites within genes: structure, function and evolution. Mol Biol Evol 21:991-1007. (Pubitemid 38658207)
    • (2004) Molecular Biology and Evolution , vol.21 , Issue.6 , pp. 991-1007
    • Li, Y.-C.1    Korol, A.B.2    Fahima, T.3    Nevo, E.4
  • 13
    • 4043140958 scopus 로고    scopus 로고
    • Development and mapping of EST-derived simple sequence repeat markers for hexaploid wheat
    • DOI 10.1139/G04-057
    • Yu JK, Dake TM, Singh S, Benscher D, Li WL, Gill B, Sorrells ME (2004) Development and mapping of EST-derived simple sequence repeat markers for hexaploid wheat. Genome 47:805-818. (Pubitemid 40033894)
    • (2004) Genome , vol.47 , Issue.5 , pp. 805-818
    • Yu, J.-K.1    Dake, T.M.2    Singh, S.3    Benscher, D.4    Li, W.5    Gill, B.6    Sorrells, M.E.7
  • 14
    • 0036344985 scopus 로고    scopus 로고
    • Identification and mapping of polymorphic SSR markers from expressed gene sequences of barley and wheat
    • Holton TA, Christopher JT, McClure L, Harker N, Henry RJ (2002) Identification and mapping of polymorphic SSR markers from expressed gene sequences of barley and wheat. Mol Breed 9:63-71.
    • (2002) Mol Breed , vol.9 , pp. 63-71
    • Holton, T.A.1    Christopher, J.T.2    McClure, L.3    Harker, N.4    Henry, R.J.5
  • 15
    • 35648929376 scopus 로고    scopus 로고
    • Mining microsatellites in eukaryotic genomes
    • DOI 10.1016/j.tibtech.2007.07.013, PII S0167779907002399
    • Sharma P, Grover A, Kahl G (2007) Mining microsatellites in eukaryotic genomes. Trends Biotechnol 25:490-498. (Pubitemid 350019510)
    • (2007) Trends in Biotechnology , vol.25 , Issue.11 , pp. 490-498
    • Sharma, P.C.1    Grover, A.2    Kahl, G.3
  • 16
    • 70350755814 scopus 로고    scopus 로고
    • Mining of expressed sequence tag libraries of cacao for microsatellite markers using five computational tools
    • Riju A, Rajesh MK, Sherin PTPF, Chandrasekar A, Apshara E, Arunachalam V (2009) Mining of expressed sequence tag libraries of cacao for microsatellite markers using five computational tools. J Genet 88:217-225.
    • (2009) J Genet , vol.88 , pp. 217-225
    • Riju, A.1    Rajesh, M.K.2    Sherin, P.T.P.F.3    Chandrasekar, A.4    Apshara, E.5    Arunachalam, V.6
  • 17
    • 60349120513 scopus 로고    scopus 로고
    • Development and mapping of simple sequence repeat markers for pearl millet from data mining of expressed sequence tags
    • Senthilvel S, Jayashree B, Mahalakshmi V, Kumar P, Nakka S, Nepolean T, Hash C (2008) Development and mapping of simple sequence repeat markers for pearl millet from data mining of expressed sequence tags. BMC Plant Biol 8:119-127.
    • (2008) BMC Plant Biol , vol.8 , pp. 119-127
    • Senthilvel, S.1    Jayashree, B.2    Mahalakshmi, V.3    Kumar, P.4    Nakka, S.5    Nepolean, T.6    Hash, C.7
  • 19
    • 0037854629 scopus 로고    scopus 로고
    • Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.)
    • Thiel T, Michalek W, Varshney R, Graner A (2003) Exploiting EST databases for the development and characterization of genederived SSR-markers in barley (Hordeum vulgare L.). Theor Appl Genet 106:411-422. (Pubitemid 36599853)
    • (2003) Theoretical and Applied Genetics , vol.106 , Issue.3 , pp. 411-422
    • Thiel, T.1    Michalek, W.2    Varshney, R.K.3    Graner, A.4
  • 20
    • 33747443069 scopus 로고    scopus 로고
    • Development of simple sequence repeat (SSR) markers and their use in identification of Dendrobium varieties
    • DOI 10.1111/j.1471-8286.2006.01361.x
    • Yue G, Lam-Chan L, Hong Y (2006) Development of simple sequence repeat (SSR) markers and their use in identification of Dendrobium varieties. Mol Ecol Notes 6:832-834. (Pubitemid 44252621)
    • (2006) Molecular Ecology Notes , vol.6 , Issue.3 , pp. 832-834
    • Yue, G.H.1    Lam-Chan, L.T.2    Hong, Y.3
  • 21
    • 38749130848 scopus 로고    scopus 로고
    • Development of microsatellite markers in cultivated vanilla: Polymorphism and transferability to other vanilla species
    • DOI 10.1016/j.scienta.2007.10.020, PII S0304423807003573
    • Bory S, Silva D, Risterucci A, Grisoni M, Besse P, Duval M (2008) Development of microsatellite markers in cultivated vanilla: polymorphism and transferability to other vanilla species. Sci Hortic 115:420-425. (Pubitemid 351179894)
    • (2008) Scientia Horticulturae , vol.115 , Issue.4 , pp. 420-425
    • Bory, S.1    Da Silva, D.2    Risterucci, A.-M.3    Grisoni, M.4    Besse, P.5    Duval, M.-F.6
  • 22
    • 67349148591 scopus 로고    scopus 로고
    • Isolation and characterization of microsatellite loci in Phalaenopsis gigantean
    • Rodrigues K, Kumar S (2009) Isolation and characterization of microsatellite loci in Phalaenopsis gigantean. Conserv Genet 10:559-562.
    • (2009) Conserv Genet , vol.10 , pp. 559-562
    • Rodrigues, K.1    Kumar, S.2
  • 23
    • 69549110742 scopus 로고    scopus 로고
    • Development of microsatellite markers for Vanda orchid
    • Phuekvilai P, Pongtongkam P, Peyachoknagul S (2009) Development of microsatellite markers for Vanda orchid. Nat Sci 43:497-506.
    • (2009) Nat Sci , vol.43 , pp. 497-506
    • Phuekvilai, P.1    Pongtongkam, P.2    Peyachoknagul, S.3
  • 25
    • 65449150519 scopus 로고    scopus 로고
    • DCAS: A desktop application for cDNA sequence annotation
    • Guo Y, Ribeiro J, Anderson J, Bour S (2009) dCAS: a desktop application for cDNA sequence annotation. Bioinformatics 25:1195-1196.
    • (2009) Bioinformatics , vol.25 , pp. 1195-1196
    • Guo, Y.1    Ribeiro, J.2    Anderson, J.3    Bour, S.4
  • 26
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • DOI 10.1101/gr.9.9.868
    • Huang X, Madan A (1999) CAP3: a DNA sequence assembly program. Genome Res 9:868-877. (Pubitemid 29488446)
    • (1999) Genome Research , vol.9 , Issue.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 28
    • 0034882994 scopus 로고    scopus 로고
    • Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): Frequency, length variation, transposon associations, and genetic marker potential
    • DOI 10.1101/gr.184001
    • Temnykh S, DeClerck G, Lukashova A, Lipovich L, Cartinhour S, McCouch S (2001) Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency and genetic marker potential. Genome Res 11:1441-1452. (Pubitemid 32771552)
    • (2001) Genome Research , vol.11 , Issue.8 , pp. 1441-1452
    • Temnykh, S.1    DeClerck, G.2    Lukashova, A.3    Lipovich, L.4    Cartinhour, S.5    McCouch, S.6
  • 29
    • 0023256559 scopus 로고
    • Slipped-strand mispairing: A major mechanism for DNA sequence evolution
    • Levinson G, Gutman G (1987) Stripped-strand mispairing: a major mechanism for DNA sequence evolution. Mol Biol Evol 4:203-221. (Pubitemid 17116759)
    • (1987) Molecular Biology and Evolution , vol.4 , Issue.3 , pp. 203-221
    • Levinson, G.1    Gutman, G.A.2
  • 30
    • 67649085735 scopus 로고    scopus 로고
    • Identification characterization and utilization of unigenes derived microsatellite markers in tea (Camellia sinensis L.)
    • Sharma R, Bhardwaj P, Negi R, Mohapatra T, Ahuja P (2009) Identification characterization and utilization of unigenes derived microsatellite markers in tea (Camellia sinensis L.). BMC Plant Biol 9:53-76.
    • (2009) BMC Plant Biol , vol.9 , pp. 53-76
    • Sharma, R.1    Bhardwaj, P.2    Negi, R.3    Mohapatra, T.4    Ahuja, P.5
  • 31
    • 0027285192 scopus 로고
    • The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates
    • Lagercrantz U, Ellegren H, Anderson L (1993) The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates. Nucleic Acids Res 21:1111-1115. (Pubitemid 23155604)
    • (1993) Nucleic Acids Research , vol.21 , Issue.5 , pp. 1111-1115
    • Lagercrantz, U.1    Ellegren, H.2    Andersson, L.3
  • 32
    • 0027357965 scopus 로고
    • PCR-amplified microsatellites as markers in plant genetics
    • Morgante M, Olivieri AM (1993) PCR-amplified microsatellites as markers in plant genetics. Plant J 3:175-182.
    • (1993) Plant J , vol.3 , pp. 175-182
    • Morgante, M.1    Olivieri, A.M.2
  • 33
    • 33645754932 scopus 로고    scopus 로고
    • Mining and survey of simple sequence repeats and expressed sequence tags of dicotyledonous species
    • Kumpatla S, Mukhopadhyay S (2005) Mining and survey of simple sequence repeats and expressed sequence tags of dicotyledonous species. Genome 48:985-998.
    • (2005) Genome , vol.48 , pp. 985-998
    • Kumpatla, S.1    Mukhopadhyay, S.2
  • 35
    • 69049102225 scopus 로고    scopus 로고
    • Development and diversity of Andean-derived gene-based microsatellites for common bean (Phaseolus vulgaris L.)
    • Blair MW, Torres MM, Giraldo MC, Pedraza F (2009) Development and diversity of Andean-derived gene-based microsatellites for common bean (Phaseolus vulgaris L.). BMC Plant Biol 9:100-113.
    • (2009) BMC Plant Biol , vol.9 , pp. 100-113
    • Blair, M.W.1    Torres, M.M.2    Giraldo, M.C.3    Pedraza, F.4
  • 36
    • 0034946803 scopus 로고    scopus 로고
    • Differential distribution of simple sequence repeats in eukaryotic genome sequences
    • Katti M, Ranjekar P, Gupta V (2001) Differential distribution of simple sequence repeats in eukaryotic genome sequences. Mol Biol Evol 18:1161-1167. (Pubitemid 32660663)
    • (2001) Molecular Biology and Evolution , vol.18 , Issue.7 , pp. 1161-1167
    • Katti, M.V.1    Ranjekar, P.K.2    Gupta, V.S.3
  • 37
    • 0036478903 scopus 로고    scopus 로고
    • Microsatellites and preferentially associated with non-repetitive DNA in plant genomics
    • Morgante M, Hanafey M, Powell W (2002) Microsatellites and preferentially associated with non-repetitive DNA in plant genomics. Nat Genet 30:194-200.
    • (2002) Nat Genet , vol.30 , pp. 194-200
    • Morgante, M.1    Hanafey, M.2    Powell, W.3
  • 38
    • 34247403306 scopus 로고    scopus 로고
    • Biased distribution of microsatellite motifs in the rice genome
    • DOI 10.1007/s00438-006-0204-y
    • Grover A, Aishwarya V, Sharma P (2007) Biased distribution of microsatellite motifs in the rice genome. Mol Genet Genomics 277:469-480. (Pubitemid 46644066)
    • (2007) Molecular Genetics and Genomics , vol.277 , Issue.5 , pp. 469-480
    • Grover, A.1    Aishwarya, V.2    Sharma, P.C.3


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