Development and genetic mapping of SSR markers in foxtail millet [Setaria italica (L.) P. Beauv.]

Theoretical and Applied Genetics

Volumn 118, Issue 4, 2009, Pages 821-829

  Jia, Xiaoping ^a   Zhang, Zhongbao ^a   Liu, Yinghui ^a   Zhang, Chengwei ^a   Shi, Yunsu ^a   Song, Yanchun ^a   Wang, Tianyu ^a   Li, Yu ^a  

^a INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

[No Author keywords available]

Indexed keywords

FOXTAIL MILLETS; GENETIC DIVERSITIES; GENETIC MAPPINGS; GENOMIC LIBRARIES; INFORMATION CONTENTS; LANDRACES; LINKAGE GROUPS; LINKAGE MAPS; POSITIVE CORRELATIONS; QUANTITATIVE TRAIT LOCI MAPPINGS; SSR MARKERS;

AMPLIFICATION; CHROMOSOMES; LINGUISTICS; PLANTS (BOTANY); POLYMORPHISM; SIGNAL INTERFERENCE;

SEMICONDUCTOR RELAYS;

PRIMER DNA;

ARTICLE; CHINA; CHROMOSOME MAP; CLUSTER ANALYSIS; GENE LIBRARY; GENETIC MARKER; GENETIC POLYMORPHISM; GENETICS; MILLET; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; VARIABLE NUMBER OF TANDEM REPEAT;

CHINA; CHROMOSOME MAPPING; CLUSTER ANALYSIS; DNA PRIMERS; GENE LIBRARY; GENETIC MARKERS; MINISATELLITE REPEATS; POLYMORPHISM, GENETIC; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; SETARIA PLANT;

SETARIA ITALICA; SETARIA VIRIDIS;

EID: 60449114951     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-008-0942-9     Document Type: Article

References (55)

1. JA Anderson GA Churchill JE Autrique SD Tanksley ME Sorrells 1993 Optimizing parental selection for genetic linkage maps Genome 36 181 186
2. BJ Bassam G Caetano-Anolles PM Gresshoff 1991 Fast and sensitive silver staining of DNA in polyacrylamide gels Anal Biochem 196 80 83
3. CJ Bell JR Ecker 1994 Assignment of 30 microsatellite loci to the linkage map of Arabidopsis Genomics 19 137 144
4. D Bhattramakki J Dong AK Chabra GE Hart 2000 An integrated SSR and RFLP linkage map of Sorghum bicolor (L.) Moench Genome 43 988 1002
5. P Castiglioni P Ajmone-Marsan R van Wijk M Motto 1999 AFLP markers in a molecular linkage map of maize: codominant scoring and linkage group distribution Theor Appl Genet 99 425 431
6. PB Cregan J Mudge EW Fickus LF Marek D Danesh R Denny BF Mathews T Jarvik ND Young 1999 Targeted isolation of simple sequence repeat markers through the use of bacterial artificial chromosomes Theor Appl Genet 98 919 928
7. JMJ De Wet LL Oestry-Stidd JL Cubero 1979 Origins and evolution of foxtail millet J Agric Trop Bot Appl 26 53 63
8. KM Devos ZM Wang CJ Beales T Sasaki MD Gale 1998 Comparative genetic maps of foxtail millet (Setaria italica) and rice (Oryza sativa) Theor Appl Genet 96 63 68
9. KM Devos TS Pittaway A Reynolds MD Gale 2000 Comparative mapping reveals a complex relationship between the pearl millet genome and those of foxtail millet and rice Theor Appl Genet 100 190 198
10. AN Doust KM Devos MD Gadberry MD Gale EA Kellogg 2004 Genetic control of branching in foxtail millet Proc Natl Acad Sci U S A 101 9045 9050
11. AN Doust KM Devos MD Gadberry MD Gale EA Kellogg 2005 The genetic basis for inflorescence variation between foxtail and green millet (Poaceae) Genetics 169 1659 1672
12. KJ Edwards JHA Barker A Daly C Jones A Karp 1996 Microsatellite libraries enriched for several microsatellite sequences in plants Biotechniques 20 758
13. PJ Fisher RC Gardner TE Richardson 1996 Single locus microsatellites isolated using 5'-anchored PCR Nucleic Acids Res 24 4369 4371
14. K Fukunaga M Kato 2003 Mitochondrial DNA variation in foxtail millet, Setaria italica (L.) P. Beauv Euphytica 129 7 13
15. K Fukunaga E Domon M Kawase 1997 Ribosomal DNA variation in foxtail millet, Setaria italica (L.) P. Beauv., and a survey of variation from Europe and Asia Theor Appl Genet 95 751 756
16. K Fukunaga ZM Wang K Kato M Kawase 2002 Geographical variation of nuclear genome RFLPs and genetic differentiation in foxtail millet, Setaria italica (L.) P. Beauv Genet Resour Crop Evol 49 95 101
17. MJ Hayden PJ Sharp 2001 Targeted development of informative microsatellite (SSR) markers Nucleic Acids Res 29 8 e44
18. XP Jia YS Shi YC Song GY Wang TY Wang Y Li 2007 Development of EST-SSR in foxtail millet (Setaria italica) Genet Resour Crop Evol 54 233 236
19. M Jusuf J Pernes 1985 Genetic variability of foxtail millet (Setaria italica (L.) P. Beauv.): Electrophoretic study of five isoenzyme systems Theor Appl Genet 71 385 391
20. K Kawase S Sakamoto 1984 Variation, geographical distribution and genetical analysis of esterase isozymes in foxtail millet, Setaria italica (L.) P. Beauv Theor Appl Genet 67 529 533
21. M Kawase S Sakamoto 1987 Geographical distribution of landrace groups classified by pollen sterility in foxtail millet (Setaria italica L. P. Beauv) Japanese J Breed 37 1 9
22. DD Kosambi 1944 The estimation of map distance from recombination values Ann Eugen 12 172 175
23. H Küster 1984
24. ES Lander P Green J Abrahamson A Barlow MJ Daly SE Lincoln L Newburg 1987 MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations Genomics 1 174 181
25. M Le Thierry d' Ennequin O Panaud B Toupance A Sarr 2000 Assessment of relationships between Setaria italica and its wild relative S. viridis using AFLP markers Theor Appl Genet 100 1061 1066
26. Y Li SZ Wu 1996 Traditional maintenance and multiplication of foxtail millet (Setaria italica (L.) P. Beauv.) landraces in China Euphytica 87 33 38
27. HW Li CH Li WK Pao 1945 Cytological and genetic studies of interspecific cross of the cultivated foxtail millet, Setaria italica P. Beauv. and the green foxtail millet, S. viridis L. J Am Soc Agron 37 32 54
28. Y Li YS Cao SZ Wu XZ Zhang 1995 A diversity analysis of foxtail millet (Setaria italica (L.) P. Beauv.) landraces of Chinese origin Genet Resour Crop Evol 43 377 384
29. Y Li J Jia Y Wang S Wu 1998 Intraspecific and interspecific variation in Setaria revealed by RAPD analysis Genet Resour Crop Evol 45 279 285
30. TL Maguire KJ Edwards P Saenger R Henry 2000 Characterisation and analysis of microsatellite loci in a mangrove species, Avicennia marina (Forsk.) Vierh. (Avicenniaceae) Theor Appl Genet 101 279 285
31. D Marinoni A Akkak G Bounous KJ Edwards R Botta 2003 Development and characterization of microsatellite markers in Castanea sativa (Mill.) Mol Breed 11 127 136
32. YS Matsuoka E Mitchell S Kresovich M Goodman J Doebley 2002 Microsatellites in Zea-variability, patterns of mutations, and use for evolutionary studies Theor Appl Genet 104 436 450
33. SR McCouch L Teytelman Y Xu KB Lobos K Clare M Walton B Fu R Maghirang Z Li Y Xing Q Zhang I Kono M Yano R Fjellstrom G DeClerck D Schneider S Cartinhour D Ware L Stein 2002 Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.) DNA Res 9 199 207
34. DG Merdinoglu L Butterlin V Bevilacqua AF Chiquet 2005 Development and characterization of a large set of microsatellite markers in grapevine (Vitis vinifera L.) suitable for multiplex PCR Mol Breed 15 349 366
35. M Nei WH Li 1979 Mathematical model for studying genetic variation in terms of restriction endonucleases Proc Natl Acad Sci U S A 76 5269 5273
36. O Panaud SR Chen R McCouch 1996 Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice (Oryza sativa L.) Mol Gen Genet 252 597 607
37. M Pandey O Gailing D Fischer HH Hattemer R Finkeldey 2004 Characterization of microsatellite markers in sycamore (Acer pseudoplatanus L.) Mol Ecol Notes 4 253 255
38. I Pejic P Ajmone-Marsan M Morgante V Kozumplick 1998 Comparative analysis of genetic similarity among maize inbred lines detected by RFLPs, RAPDs, SSRs, and AFLPs Theor Appl Genet 97 1248 1255
39. W Powel M Morgante C Andre M Hanafey J Vogel 1996 The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis Mol Breed 2 225 238
40. M Prasad RK Varshney K Royj 2000 The use of microsatellites for detecting DNA polymorphism, genotype identification and genetic diversity in wheat Theor Appl Genet 100 584 592
41. Rohlf JF (1995) NTSYS-pc: numerical taxonomy and multivariate analysis system, Version 2.11. Exeter Software, Setauket
42. JR Russell JD Fuller M Macaulay 1997 Direct evaluation of levels of genetic variation among barley accessions detected by RFLPs, AFLPs, SSRs and RAPDs Theor Appl Genet 93 714 723
43. DJ Sargent AM Hadonou DW Simpson 2003 Development and characterization of polymorphic microsatellite markers from Fragaria viridis, a wild diploid strawberry Mol Ecol Notes 3 550 552
44. T Schmidt C Jung M Metzla 1991 Distribution and evolution of two satellite DNAs in the genus Beta Theor Appl Genet 82 793 799
45. D Schontz B Rether 1998 Genetic variability in foxtail millet, Setaria italica (L.) P. Beauv. using a heterologous rDNA probe Plant Breed 117 231 234
46. D Schontz B Rether 1999 Genetic variability in foxtail millet, Setaria italica (L.) P. Beauv.: identification and classification of lines with RAPD markers Plant Breed 118 190 192
47. L Sivaraman PK Ranjekar 1984 Novel molecular features of millet genomes Indian J Biochem Biophys 21 299 303
48. MJM Smulders G Bredemeijer W Rus-Kortekaas P Arens B Vosman 1997 Use of short microsatellites from database sequence to generate polymorphism among Lycopersicon esculentum cultivars and accessions of other Lycopersicon species Theor Appl Genet 97 264 272
49. D Tautz M Renz 1984 Simple sequences are ubiquitous components of eukaryotic genomes Nucleic Acids Res 12 4127 4138
50. MR Thomas NS Scott 1993 Microsatellite repeats in grapevine reveal DNA polymorphisms when analysed as sequence tagged sites (STSs) Theor Appl Genet 86 985 990
51. G Toth Z Gaspari J Jurka 2000 Microsatellites in different eukaryotic genome, survey and analysis Genome Res 10 1967 1981
52. S Ueno Y Tsumura I Washitani 2003 Development of microsatellite markers in Primula sieboldii E. Morren, a threatened Japanese perennial herb Conserv Genet 4 809 811
53. MA Viruel JI Hormaza 2004 Development, characterization and variability analysis of microsatellites in lychee (Litchi chinensis Sonn., Sapindaceae) Theor Appl Genet 108 896 902
54. ZM Wang KM Devos CJ Liu RQ Wang MD Gale 1998 Construction of RFLP-based maps of foxtail millet Theor Appl Genet 96 31 36
55. 2, backcross, doubled haploid, and recombinant inbred populations in rice (Oryza sativa L.) Mol Genet Genomics 253 535 545