-
1
-
-
30044448460
-
Recognition of tumor glycans by antigen-presenting cells
-
DOI 10.1016/j.coi.2005.11.001, PII S0952791505001949, Innate Immunity/Antigen Processing and Recognition
-
Aarnoudse, C.A., Garcia Vallejo, J.J., Saeland, E. and van Kooyk, Y. (2006) 'Recognition of tumor glycans by antigen-presenting cells', Curr. Opin. Immunol., Vol. 18, pp.105-111. (Pubitemid 43049656)
-
(2006)
Current Opinion in Immunology
, vol.18
, Issue.1
, pp. 105-111
-
-
Aarnoudse, C.A.1
Vallejo, J.J.G.2
Saeland, E.3
Van Kooyk, Y.4
-
2
-
-
0033164667
-
Comparing classifiers when the misclassification costs are uncertain
-
Adams, N.M. and Hand, D.J. (1999) 'Comparing classifiers when the misclassification costs are uncertain', Pattern Recognion, Vol. 32, pp.1139-1147.
-
(1999)
Pattern Recognion
, vol.32
, pp. 1139-1147
-
-
Adams, N.M.1
Hand, D.J.2
-
3
-
-
0037076322
-
Selection bias in gene extraction on the basis of microarray gene-expression data
-
DOI 10.1073/pnas.102102699
-
Ambroise, C. and McLachlan, G.J. (2002) 'Selection bias in gene extraction on the basis of microarray gene-expression data', PNAS, Vol. 99, No. 10. pp.6562-6566. (Pubitemid 34526172)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.10
, pp. 6562-6566
-
-
Ambroise, C.1
McLachlan, G.J.2
-
4
-
-
76749122843
-
Local causal and markov. blanket induction for causal discovery and feature selection for classification, Part II: Analysis and extensions
-
Aliferis, F.C., Statnikov, A., Tsamardinos, I., Mani, S. and Koutsoukos, D.X. (2010a) 'Local causal and markov. blanket induction for causal discovery and feature selection for classification, Part II: Analysis and extensions', Journal of Machine Learning Research, Vol. 11, pp.235-284.
-
(2010)
Journal of Machine Learning Research
, vol.11
, pp. 235-284
-
-
Aliferis, F.C.1
Statnikov, A.2
Tsamardinos, I.3
Mani, S.4
Koutsoukos, D.X.5
-
5
-
-
76749137632
-
Local causal and markov blanket induction for causal discovery and feature selection for classification, Part I: Algorithms and empirical evaluation
-
Aliferis, F.C., Statnikov, A., Tsamardinos, I, Mani, S. and Koutsoukos, D.X. (2010b) 'Local causal and markov blanket induction for causal discovery and feature selection for classification, Part I: Algorithms and empirical evaluation', Journal of Machine Learning Research, Vol. 11, pp.171-234.
-
(2010)
Journal of Machine Learning Research
, vol.11
, pp. 171-234
-
-
Aliferis, F.C.1
Statnikov, A.2
Tsamardinos, I.3
Mani, S.4
Koutsoukos, D.X.5
-
6
-
-
84863364659
-
Immunomodulatory effects of celecoxib in patients at increased risk for breast cancer
-
San Antonio, TX. Br. Cancer Res. Treatment
-
Arun, B., Vuskovic, M.I., Vasiliu, D., Xu, H., Atchley, D. Chambers, J.R., Bovin, N.V., Sneige, N., Hortobagyi, G.N. and Huflejt, M.E. (2007) 'Immunomodulatory effects of celecoxib in patients at increased risk for breast cancer', 30th San Antonio Breast Cancer Symposium, San Antonio, TX. Br. Cancer Res. Treatment, Vol. 106, Suppl. 1, p.S180.
-
(2007)
30th San Antonio Breast Cancer Symposium
, vol.106
, Issue.SUPPL. 1
-
-
Arun, B.1
Vuskovic, M.I.2
Vasiliu, D.3
Xu, H.4
Atchley, D.5
Chambers, J.R.6
Bovin, N.V.7
Sneige, N.8
Hortobagyi, G.N.9
Huflejt, M.E.10
-
7
-
-
0036968848
-
Overall concordance correlation coefficient for evaluating agreement among multiple observers
-
Barnhart, H.X., Haber, M. and Song, J. (2002) 'Overall concordance correlation coefficient for evaluating agreement among multiple observers', Biometrics, Vol. 58, pp.1020-1027. (Pubitemid 36133782)
-
(2002)
Biometrics
, vol.58
, Issue.4
, pp. 1020-1027
-
-
Barnhart, H.X.1
Haber, M.2
Song, J.3
-
8
-
-
10344233222
-
Printed covalent glycan array for ligand profiling of diverse glycan binding proteins
-
DOI 10.1073/pnas.0407902101
-
Blixt, O., Head Mondala, S.T., Scanlan, C., Huflejt, M.E. Alvarez, R., Bryan, M.C., Fazio, F., Caralese, D., Stevens, J., Razi, N., Stevens, D.J., Skehel, J.J., van Die, I., Burton, D.R., Wilson, I.A., Cummings, R., Bovin, N., Wong, C-H. and Paulson, J.C. (2004) 'Printed covalent glycan array for ligand profiling of diverse glycan binding proteins', PNAS, Vol. 101, pp.17033-17038. (Pubitemid 39627769)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.49
, pp. 17033-17038
-
-
Blixt, O.1
Head, S.2
Mondala, T.3
Scanlan, C.4
Huflejt, M.E.5
Alvarez, R.6
Bryan, M.C.7
Fazio, F.8
Calarese, D.9
Stevens, J.10
Razi, N.11
Stevens, D.J.12
Skehel, J.J.13
Van Die, I.14
Burton, D.R.15
Wilson, I.A.16
Cummings, R.17
Bovin, N.18
Wong, C.-H.19
Paulson, J.C.20
more..
-
10
-
-
0031191630
-
The use of the area under the ROC curve in the evaluation of machine learning algorithms
-
PII S0031320396001422
-
Bradley, A.P. (1997) 'The Use of the Area under the ROC curve in the evaluation of machine learning algorithm', Pattern Recognition, Vol. 30, No. 7, pp.1145-1159. (Pubitemid 127406521)
-
(1997)
Pattern Recognition
, vol.30
, Issue.7
, pp. 1145-1159
-
-
Bradley, A.P.1
-
11
-
-
0035478854
-
Random forests
-
DOI 10.1023/A:1010933404324
-
Breiman, L. (2001) 'Random forests', Machine Learning, Vol. 45, No. 1, pp.5-32. (Pubitemid 32933532)
-
(2001)
Machine Learning
, vol.45
, Issue.1
, pp. 5-32
-
-
Breiman, L.1
-
12
-
-
84984932472
-
Exploring the new world of the genome with DNA microarrays
-
DOI 10.1038/4462
-
Brown, P.O. and Botstein, D. (1999) 'Exploring the new world of genome with DNA microarrays', Nature Genetics, Vol. 21, pp.33-37. (Pubitemid 29031489)
-
(1999)
Nature Genetics
, vol.21
, Issue.1 SUPPL.
, pp. 33-37
-
-
Brown, P.O.1
Botstein, D.2
-
16
-
-
3242708140
-
Least angle regression
-
DOI 10.1214/009053604000000067
-
Efron, B., Hastie, T., Johnstone, T. and Tibshirani, R. (2004) 'Least angle regression', Annals of Statistics, Vol. 32, pp.407-499. (Pubitemid 41250302)
-
(2004)
Annals of Statistics
, vol.32
, Issue.2
, pp. 407-499
-
-
Efron, B.1
Hastie, T.2
Johnstone, I.3
Tibshirani, R.4
Ishwaran, H.5
Knight, K.6
Loubes, J.-M.7
Massart, P.8
Madigan, D.9
Ridgeway, G.10
Rosset, S.11
Zhu, J.I.12
Stine, R.A.13
Turlach, B.A.14
Weisberg, S.15
Hastie, T.16
Johnstone, I.17
Tibshirani, R.18
-
17
-
-
0345438685
-
-
Technical Report, HPL-2003-4, Intelligent Enterprise Technologies Laboratory, HP Laboratories Palo Alto
-
Fawcett, T. (2003) ROC Graphs: Notes and Practical Considerations for Researchers, Technical Report, HPL-2003-4, Intelligent Enterprise Technologies Laboratory, HP Laboratories Palo Alto.
-
(2003)
ROC Graphs: Notes and Practical Considerations for Researchers
-
-
Fawcett, T.1
-
18
-
-
77950231312
-
Tutorial on the many faces of ROC analysis in machine learning
-
July, Banff, Alberta, Canada
-
Flach, P. (2004) 'Tutorial on the many faces of ROC analysis in machine learning', 21st International Conference on Machine Learning (ICML), July, Banff, Alberta, Canada.
-
(2004)
21st International Conference on Machine Learning (ICML)
-
-
Flach, P.1
-
19
-
-
0036161259
-
Gene selection for cancer classification using support vector machines
-
DOI 10.1023/A:1012487302797
-
Guyon, I., Weston, J., Barnhill, S. and Vapnik, V. (2002) 'Gene selection for Cancer classification using support vector machines', Machine Learning, Vol. 46, pp.389-422. (Pubitemid 34129977)
-
(2002)
Machine Learning
, vol.46
, Issue.1-3
, pp. 389-422
-
-
Guyon, I.1
Weston, J.2
Barnhill, S.3
Vapnik, V.4
-
20
-
-
33745561205
-
An introduction to variable and feature selection
-
Guyon, I. and Elisseeff, A. (2003) 'An introduction to variable and feature selection', J. Machine Learning Research, Vol. 3, pp.1157-1182.
-
(2003)
J. Machine Learning Research
, vol.3
, pp. 1157-1182
-
-
Guyon, I.1
Elisseeff, A.2
-
21
-
-
0036677372
-
Glycosylation defining cancer malignancy: New wine in an old bottle
-
Hakomori, S. (2002) 'Glycosylation defining cancer malignancy: New wine in an old bottle', PNAS, Vol. 99, p.10231.
-
(2002)
PNAS
, vol.99
, pp. 10231
-
-
Hakomori, S.1
-
22
-
-
0003562954
-
A smple generalization of the area under the ROC curve for multiple class classification problem
-
DOI 10.1023/A:1010920819831
-
Hand, D. and Till, R. (2001) 'A smple generalization of the area under the ROC curve for multiple class classification problem', Machine Learning, Vol. 45, pp.171-186. (Pubitemid 33635984)
-
(2001)
Machine Learning
, vol.45
, Issue.2
, pp. 171-186
-
-
Hand, D.J.1
Till, R.J.2
-
23
-
-
0020083498
-
The meaning and use of the area under a receiver operating characteristic (ROC) curve
-
Hanley, J.M. and McNeil, B.J. (1982) 'The meaning and use of the area under a Receiver Operating Characteristic (ROC) curve', Radiology, Vol. 143, pp.29-36. (Pubitemid 12142173)
-
(1982)
Radiology
, vol.143
, Issue.1
, pp. 29-36
-
-
Hanley, J.A.1
McNeil, B.J.2
-
24
-
-
33947252806
-
Detection of neoplasia-specific clusters of anti-glycan antibodies in sera of breast cancer patients using a novel glycan array
-
Huflejt, M.E., Cristofanilli, M., Shaw, L.E., Reuben, J.M., Fritsche, H.A., Hortobagyi, G.N. and Blixt, O. (2005a) 'Detection of neoplasia-specific clusters of anti-glycan antibodies in sera of breast cancer patients using a novel glycan array', Proc. Amer. Assoc. Cancer Res., Vol. 46, p.1313.
-
(2005)
Proc. Amer. Assoc. Cancer Res.
, vol.46
, pp. 1313
-
-
Huflejt, M.E.1
Cristofanilli, M.2
Shaw, L.E.3
Reuben, J.M.4
Fritsche, H.A.5
Hortobagyi, G.N.6
Blixt, O.7
-
25
-
-
80255139730
-
Glycan array identifies specific signatures of anti-glycan autoantibodies in sera of breast cancer Patients: Diagnostic, prognostic and therapeutic opportunities', 28th Annual San Antonio Breast Cancer Symposium, TX
-
Huflejt, M.E., Vuskovic, M. Blixt, O., Xu, H., Shaw, L.E., Reuben, J.M., Kuerer, H.M. and Cristofanilli, M. (2005b) 'Glycan array identifies specific signatures of anti-glycan autoantibodies in sera of breast cancer Patients: Diagnostic, prognostic and therapeutic opportunities', 28th Annual San Antonio Breast Cancer Symposium, TX, Breast Cancer Res. Treat., San Antonio, Vol. 94, p.S85.
-
(2005)
Breast Cancer Res. Treat., San Antonio
, vol.94
-
-
Huflejt, M.E.1
Vuskovic M. Blixt, O.2
Xu, H.3
Shaw, L.E.4
Reuben, J.M.5
Kuerer, H.M.6
Cristofanilli, M.7
-
26
-
-
68749104303
-
Anti-carbohydrate antibodies of normal sera: Findings, surprises, and challenges
-
Huflejt, M.E., Vuskovic, M., Vasiliu, D., Xu, H., Obukhova, P., Shilova, N., Tuzikov, A., Galanina, O., Arun, B., Lu, K. and Bovin, N. (2009) 'Anti-carbohydrate antibodies of normal sera: findings, surprises, and challenges', Molecular Immunology, Vol. 46, pp.3037-3049.
-
(2009)
Molecular Immunology
, vol.46
, pp. 3037-3049
-
-
Huflejt, M.E.1
Vuskovic, M.2
Vasiliu, D.3
Xu, H.4
Obukhova, P.5
Shilova, N.6
Tuzikov, A.7
Galanina, O.8
Arun, B.9
Lu, K.10
Bovin, N.11
-
27
-
-
84990629710
-
New desorption strategies for mass spectrometric analysis of macromolecules
-
Hutchens, T.W. and Yip, Y-T. (1993) 'New desorption strategies for mass spectrometric analysis of macromolecules', Rapid Comm. In Mass Spectrometry, Vol. 7, pp.576-580.
-
(1993)
Rapid Comm. In Mass Spectrometry
, vol.7
, pp. 576-580
-
-
Hutchens, T.W.1
Yip, Y.-T.2
-
28
-
-
0036079692
-
The SELDI-TOF MS approach to proteomics: Protein profiling and biomarker identification
-
DOI 10.1006/bbrc.2002.6678
-
Issaq, H.J., Veenstra, T.D., Conrads, T.P. and Felschow, D. (2002) 'The SELDI-TOF MS approach to proteomics: Protein profiling and biomarker identification', Biochemical and Biophysical Research Communications, Vol. 292, pp.587-592. (Pubitemid 34681100)
-
(2002)
Biochemical and Biophysical Research Communications
, vol.292
, Issue.3
, pp. 587-592
-
-
Issaq, H.J.1
Veenstra, T.D.2
Conrads, T.P.3
Felschow, D.4
-
29
-
-
0001602356
-
An alternative family of transformations
-
John, N.R. and Draper, J.A. (1980) 'An alternative family of transformations', Applied Statistics, Vol. 29, No. 2, pp.190-197.
-
(1980)
Applied Statistics
, vol.29
, Issue.2
, pp. 190-197
-
-
John, N.R.1
Draper, J.A.2
-
30
-
-
33845382806
-
Nonparametric estimation from incomplete observations
-
Kaplan, E.L. and Meier, P. (1958) 'Nonparametric estimation from incomplete observations', J. Amer. Statist. Assn., Vol. 53, pp.457-481.
-
(1958)
J. Amer. Statist. Assn.
, vol.53
, pp. 457-481
-
-
Kaplan, E.L.1
Meier, P.2
-
31
-
-
0024521543
-
A concordance correlation coefficient to evaluate reproducibility
-
Lin, L.I. (1989) 'A concordance correlation coefficient to evaluate reproducibility', Biometrics, Vol. 45, pp.255-268.
-
(1989)
Biometrics
, vol.45
, pp. 255-268
-
-
Lin, L.I.1
-
32
-
-
84880794162
-
AUC: A statistically consistent and more discriminating measure than accuracy
-
Acapulco, Mexico
-
Ling, C.X., Huang, J. and Zhang, H. (2003) 'AUC: A statistically consistent and more discriminating measure than accuracy', Proceedings of the Eighteenth International Joint Conference of Artificial Intelligence (IJCAI), Acapulco, Mexico, pp.519-526.
-
(2003)
Proceedings of the Eighteenth International Joint Conference of Artificial Intelligence (IJCAI)
, pp. 519-526
-
-
Ling, C.X.1
Huang, J.2
Zhang, H.3
-
33
-
-
33645515866
-
Global gene expression profiling of pleural mesotheliomas: Overexpression of aurora kinases and P16/CDKN2A deletion as prognostic factors and critical evaluation of microarray-based prognostic prediction
-
Lopez-Rios, F., Chuai, S., Flores, R., Shimizu, S., Ohno, T., Wakahara, K., Illei, P.B., Hussain, S., Krug, L., Zakowski, M.F., Rusch, V., Olshen, A.B. and Ladanyi, M. (2006) 'Global gene expression profiling of pleural mesotheliomas: Overexpression of aurora kinases and P16/CDKN2A deletion as prognostic factors and critical evaluation of microarray-based prognostic prediction', Cancer Research, Vol. 66, No. 6, pp.2970-2979.
-
(2006)
Cancer Research
, vol.66
, Issue.6
, pp. 2970-2979
-
-
Lopez-Rios, F.1
Chuai, S.2
Flores, R.3
Shimizu, S.4
Ohno, T.5
Wakahara, K.6
Illei, P.B.7
Hussain, S.8
Krug, L.9
Zakowski, M.F.10
Rusch, V.11
Olshen, A.B.12
Ladanyi, M.13
-
34
-
-
0003973174
-
-
Richard D. Irwin, Inc., Homewood Ill
-
Nete, J. and Wasserman, W. (1974) Applied Lenar Statistical Models, Regression, Analysis of Variance, and Experimental Design, Richard D. Irwin, Inc., Homewood Ill, pp.382-387.
-
(1974)
Applied Lenar Statistical Models, Regression, Analysis of Variance, and Experimental Design
, pp. 382-387
-
-
Nete, J.1
Wasserman, W.2
-
35
-
-
38349089209
-
Stratification bias in low signal microarray studies
-
Parker, B.J., Günter, S. and Bedo, J. (2007) 'Stratification bias in low signal microarray studies', MBC Bioinformatics, Vol. 8, p.326.
-
(2007)
MBC Bioinformatics
, vol.8
, pp. 326
-
-
Parker, B.J.1
Günter, S.2
Bedo, J.3
-
36
-
-
0030720761
-
Nucleic acid-based methods for detection of cancer
-
Sidranski, D. (1997) 'Nucleic acid-based methods for detection of cancer', Science, Vol. 278, pp.1054-1058.
-
(1997)
Science
, vol.278
, pp. 1054-1058
-
-
Sidranski, D.1
-
37
-
-
0037245343
-
Pitfalls in the use of DNA microarray data for diagnostic and prognostic classification
-
Simon, R., Radmacher, M.D., Dobbin, K. and McShane, L.M. (2003) 'Pitfalls in the use of DNA microarray data for diagnostic and prognostic classification', Journal of the Nationl Cancer Institute, Vol. 95, No. 1, pp.14-17.
-
(2003)
Journal of the Nationl Cancer Institute
, vol.95
, Issue.1
, pp. 14-17
-
-
Simon, R.1
Radmacher, M.D.2
Dobbin, K.3
McShane, L.M.4
-
38
-
-
84863378648
-
-
Trademark Publications, Trimark Publications, Global Information, Inc. Prod. Code TK63076
-
Trademark Publications (2008) Biomarker Technology Platforms for Cancer Diagnoses and Therapies, Trimark Publications, Global Information, Inc. Prod. Code TK63076, http://www.the-infoshop.com/report/th63076-diagnoses.html
-
(2008)
Biomarker Technology Platforms for Cancer Diagnoses and Therapies
-
-
-
39
-
-
0036855519
-
SELDI proteinchip MS: A platform for biomarker discovery and cancer diagnosis
-
DOI 10.1586/14737159.2.6.549
-
Wright Jr., G.L. (2002) 'SELDI protein chip MS: A platform for biomarker discovery and cancer diagnosis', Expert Review of Molecular Diagnostics, Vol. 2, pp.549-563. (Pubitemid 35387847)
-
(2002)
Expert Review of Molecular Diagnostics
, vol.2
, Issue.6
, pp. 549-563
-
-
Wright Jr., G.L.1
|