Phenotypic and phylogenetic analysis of lactic acid bacteria isolated from forage crops and grasses in the Tibetan Plateau

Journal of Microbiology

Volumn 50, Issue 1, 2012, Pages 63-71

  Pang, Huili ^a   Tan, Zhongfang ^a   Qin, Guangyong ^a   Wang, Yanping ^a   Li, Zongwei ^a   Jin, Qingsheng ^b   Cai, Yimin ^c  

^a ZHENGZHOU UNIVERSITY   (China)

^b INSTITUTE OF PLANT PROTECTION AND MICROBIOLOGY   (China)

^c JAPAN INTERNATIONAL RESEARCH CENTER FOR AGRICULTURAL SCIENCES   (Japan)

Author keywords

16S rDNA; epiphytic microflora; forage; lactic acid bacteria; recA gene

Indexed keywords

BACTERIAL DNA; RECA PROTEIN; RIBOSOME DNA; RNA 16S;

ARTICLE; BIODIVERSITY; CHEMISTRY; CHINA; CLASSIFICATION; CLUSTER ANALYSIS; CROP; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; LACTOBACILLALES; MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY; PHYSIOLOGY; POACEAE;

BIODIVERSITY; CLUSTER ANALYSIS; CROPS, AGRICULTURAL; DNA, BACTERIAL; DNA, RIBOSOMAL; LACTOBACILLALES; MOLECULAR SEQUENCE DATA; PHYLOGENY; POACEAE; REC A RECOMBINASES; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; TIBET;

ELEUSINE INDICA; LACTOBACILLUS BREVIS; LACTOCOCCUS LACTIS SUBSP. LACTIS; LEUCONOSTOC PSEUDOMESENTEROIDES; MEDICAGO SATIVA; ONOBRYCHIS; POACEAE; TRIFOLIUM; WEISSELLA PARAMESENTEROIDES; ZEA MAYS;

EID: 84863285088     PISSN: 12258873     EISSN: 19763794     Source Type: Journal    
DOI: 10.1007/s12275-012-1284-5     Document Type: Article

References (22)

1. Cai, Y. 1999. Identification and characterization of Enterococcus species isolated from forage crops and their influence on silage fermentation. J. Dairy Sci. 82, 2466-2471.
2. Cai, Y., Benno, Y., Ogawa, M., Ohmomo, S., Kumai, S., and Nakase, K. 1998. Influence of Lactobacillus spp. from an inoculants and of Weissella and Leuconostoc spp. from forage crops on silage fermentation. Appl. Environ. Microbiol. 64, 2982-2987.
3. Cai, Y., Kumai, S., Ogawa, M., Benno, Y., and Nakase, T. 1999a. Characterization and identification of Pediococcus species isolated from forage crops and their application for silage preparation. Appl. Environ. Microbiol. 65, 2901-2906.
4. Cai, Y., Ohmomo, S., Ogawa, M., and Kumai, S. 1999b. Effect of applying lactic acid bacteria isolated from forage crops on fermentation characteristics and aerobic deterioration of silage. J. Dairy Sci. 82, 520-526.
5. Curk, M. C., Hubert, J. C., and Bringel, F. C. 1996. Lactobacillus paraplantarum sp. nov., a new species related to Lactobacillus plantarum. Int. J. Syst. Bacteriol. 46, 595-598.
6. Duan, A., Wu, G., and Liang, X. 2008. Influence of the Tibetan Plateau on the summer climate patterns over East Asia in the IAP/LASG SAMIL model. Adv. Atmos. Sci. 25, 518-528.
7. Eisen, J. A. 1995. The recA protein as a model molecule for the molecular systematic studies of bacteria: comparison of trees of recAs and 16S RNA from the same species. J. Mol. Evol. 41, 1105-1123.
8. Eitan, B. D., Shapiro, O. H., Siboni, N., and Kushmaro, A. 2006. Advantage of using inosine at the 3′ termini of 16S rRNA gene universal primers for the study of microbial diversity. Appl. Environ. Microbiol. 72, 6902-6906.
9. Ennahar, S., Cai, Y., and Fujita, Y. 2003. Phylogenetic diversity of lactic acid bacteria associated with paddy rice silage as determined by 16S ribosomal DNA analysis. Appl. Environ. Microbiol. 69, 444-451.
10. Fenlon, D. R., Logue, D. N., Gunn, J., and Wilson, J. 1995. A study of mastitis bacteria and herd management practices to identify their relationship to high somatic cell counts in bulk tank milk. Brit. Vet. J. 151, 17.
11. Hammes, W. P. and Vogel, R. F. 1995. The genus Lactobacillus. pp. 19-54 in the Lactic Acid Bacteria. The Genera of Lactic Acid Bacteria. Vol. 2. In Wood, B. J. B. and Holzapfel, W. H. (eds.), Blackie Academic and Professional, London, UK.
12. Kimura, M. and Ohta, T. 1972. On the stochastic model for estimation of mutation distance between homologous proteins. J. Mol. Evol. 2, 87-90.
13. Kozaki, M., Uchimura, T., and Okada, S. 1992. Experimental manual for lactic acid bacteria. Asakurasyoten, Tokyo, Japan.
14. Lin, C., Bolsen, K. K., Brent, B. E., and Fung, D. Y. C. 1992. Epiphytic lactic acid bacteria succession during the pre-ensiling and ensiling periods of alfalfa and maize. J. Appl. Bacteriol. 73, 375-387.
15. McDonald, P., Henderson, N., and Heron, S. 1991. The biochemistry of Silage. 2nd ed. Chalcombe Publ., Marlow, UK.
16. Pang, H., Qin, G., Tan, Z., Li, Z., Wang, Y., and Cai, Y. 2011. Natural populations of lactic acid bacteria associated with silage fermentation as determined by phenotype, 16S ribosomal RNA and recA gene analysis. Syst. Appl. Microbiol. 34, 235-241.
17. Saito, H. and Miura, K. I. 1963. Preparation of transforming deoxyribonucleic acid by phenol treatment. Biochim. Biophys. Acta72, 619-629.
18. Saitou, N. and Nei, M. 1987. The neighbor-joining method: a new method for reconstructing phylgenetic trees. Mol. Biol. Evol. 4, 406-425.
19. Stackebrandt, E. and Goebel, B. M. 1994. A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44, 846-849.
20. Stiles, M. E. 1996. Biopreservation by lactic acid bacteria. Antonie van Leeuwenhoek70, 331-345.
21. Tamura, K., Dudley, J., Nei, M., and Kumar, S. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4. 0. Mol. Biol. Evol. 24, 1596-1599.
22. Torriani, S., Felis, G. E., and Dellaglio, F. 2001. Differentiation of Lactobacillus plantarum, L. pentosus, and L. paraplantarum by recA gene sequence analysis and multiplex PCR assay with recA gene-derived primers. Appl. Environ. Microbiol. 67, 3450-3454.