Differential transcript accumulation in chickpea during early phases of compatible interaction with a necrotrophic fungus Ascochyta rabiei

Molecular Biology Reports

Volumn 39, Issue 4, 2012, Pages 4635-4646

  Jaiswal, Purnima ^a,b   Cheruku, Jyothi Reddy ^a   Kumar, Kamal ^a   Yadav, Saurabh ^a   Singh, Archana ^a   Kumari, Pragati ^a   Dube, Sunil Chandra ^b   Upadhyaya, Kailash C ^c   Verma, Praveen Kumar ^a  

^a NATIONAL INSTITUTE OF PLANT GENOME RESEARCH   (India)

^b JAWAHARLAL NEHRU UNIVERSITY   (India)

^c INDIAN AGRICULTURAL RESEARCH INSTITUTE   (India)

Author keywords

Ascochyta rabiei; Chickpea; Cicer arietinum; Compatible interactions; Induced immunity; Suppression subtractive hybridization (SSH)

Indexed keywords

CYTOCHROME P450; LEUCINE RICH REPEAT PROTEIN; PHENYLALANINE AMMONIA LYASE; UNCLASSIFIED DRUG; VEGETABLE PROTEIN; MESSENGER RNA;

ARTICLE; ASCOCHYTA RABIEI; CAX INTERACTING PROTEIN 1 GENE; CELL METABOLISM; CELL STRESS; CHICKPEA; CLUSTER ANALYSIS; CONTROLLED STUDY; CORONATINE INSENSITIVE 1 GENE; CYTOCHROME P450 MONOOXYGENASE GENE; DNA LIBRARY; EARLY RESPONSE GENE; FUNGAL PLANT DISEASE; FUNGUS; GENE CONTROL; GENE EXPRESSION REGULATION; GENE FUNCTION; GENE ISOLATION; GENETIC ANALYSIS; GENETIC TRANSCRIPTION; MACROARRAY ANALYSIS; NONHUMAN; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; PLANT DEFENSE; PLANT FUNGUS INTERACTION; PLANT GENE; PLANT IMMUNITY; PROTEIN DEGRADATION; REAL TIME POLYMERASE CHAIN REACTION; REGULATOR GENE; SEEDLING; SIGNAL TRANSDUCTION; SUPPRESSION SUBTRACTIVE HYBRIDIZATION; UNINDEXED SEQUENCE; UPREGULATION; XYLOGLUCAN ENDOTRANSGLUCOSYLASE HYDROLASE 5 GENE; ASCOMYCETES; CICER; GENE EXPRESSION PROFILING; GENE LIBRARY; GENETICS; HOST PATHOGEN INTERACTION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; PHYSIOLOGY;

ASCOCHYTA; CICER ARIETINUM; FUNGI; MYCOSPHAERELLA RABIEI;

ASCOMYCOTA; BLOTTING, NORTHERN; CICER; CLUSTER ANALYSIS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GENE LIBRARY; GENES, PLANT; HOST-PATHOGEN INTERACTIONS; MOLECULAR SEQUENCE DATA; REAL-TIME POLYMERASE CHAIN REACTION; RNA, MESSENGER;

EID: 84863112125     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-011-1255-7     Document Type: Article

References (61)

1. Feng H, Wang X, Sun Y, Wang X, Chen X, Guo J, Duan Y, Huang L, Kang Z (2011) Cloning and characterization of a calcium binding EF-hand protein gene TaCab1 from wheat and its expression in response to Puccinia striiformis f. sp. tritici and abiotic stresses. Mol Biol Rep 38:3857-3866
2. Oliver RP, Ipcho SVS (2004) Arabidopsis pathology breathes new life into the necrotrophs-vs. biotrophs classification of fungal pathogens. Mol Plant Pathol 5:347-352
3. Markham JE, Hille J (2001) Host selective toxins as agents of cell death in plant-fungus interactions. Mol Plant Pathol 2:229-239
4. Wolpert TJ, Dunkle LD, Ciuffetti LM (2002) Host-selective toxins and avirulence determinants: what's in a namě Annu Rev Phytopathol 40:251-285
5. Staples RC, Mayer AM (2003) Suppression of host resistance by fungal plant pathogens. Isr J Plant Sci 51:175-186
6. Govrin EM, Levine A (2000) The hypersensitive response facilitates plant infection by the necrotrophic pathogen Botrytis cinerea. Curr Biol 10:751-757
7. Jones JDG, Dangl JL (2006) The plant immune system. Nature 444:323-329
8. Chisholm ST, Coaker G, Day B, Staskawicz BJ (2006) Hostmicrobe interactions: shaping the evolution of the plant immune response. Cell 124:803-814
9. Faris JD, Zhang Z, Lu H, Reddy L, Cloutier S, Fellers JP, Meinhardt SW, Rasmussen JB, Xu SS, Oliver RP, Simons KJ, Friesen TL (2010) A unique wheat disease resistance-like gene governs effector triggered susceptibility to necrotrophic pathogens. Proc Natl Acad Sci USA 107:13544-13549
10. Panstruga R (2003) Establishing compatibility between plants and obligate biotrophic pathogens. Curr Opin Plant Biol 6: 320-326
11. Nene YL, Reddy MV (1987) Chickpea diseases and their control. In: Saxena MC, Singh KB (eds) The chickpea. CAB International, UK, pp 233-270
12. Gaur RB, Singh RD (1996) Effects of Ascochyta blight on grain yield and protein in chickpea. Indian J Mycol Plant Pathol 26:259-262
13. Jayakumar P, Gossen BD, Gan YT, Warkentin TD, Banniza S (2005) Ascochyta blight of chickpea: infection and host resistance mechanisms. Can J Plant Pathol 27:499-509
14. Armstromg-Cho C, Gossen BD (2005) Impact of glandular hair exudates on infection of chickpea by Ascochyta rabiei. Can J Bot 83:22-27
15. Daniel S, Tiemann K, Wittkampf U, Bless W, Hinderer W, Barz W (1990) Elicitor-induced metabolic changes in cell cultures of chickpea (Cicer arietinum L.) cultivars resistant and susceptible to Ascochyta rabiei: I. Investigations of enzyme activities involved in isoflavone and pterocarpan phytoalexin biosynthesis. Planta 182:270-278
16. Kessmann H, Barz W (1987) Accumulation of isoflavone and pterocarpan phytoalexins in cell suspension cultures of different cultivars of chickpea. Plant Cell Rep 6:55-59
17. Khirbat SK, Jalali BL (1998) Production of phytoalexin in the leaves of chickpea (Cicer arietinum L.) after inoculation with Ascochyta rabiei. Legume Res 21:135-143
18. Cobos MJ, Rubio J, Strange RN, Moreno MT, Gil J, Millan T (2006) A new QTL for ascochyta blight resistance in an RIL population derived from an interspecific cross in chickpea. Euphytica 149:105-111
19. Flandez-Galvez H, Ades PK, Ford R, Pang ECK, Taylor PWJ (2003) QTL analysis for ascochyta blight resistance in an intraspecific population of chickpea (Cicer arietinum L.). Theor Appl Genet 107:1257-1265
20. Iruela M, Rubio J, Barro F, Cubero JI, Millan T, Gil J (2006) Detection of two quantitative trait loci for resistance to ascochyta blight in an intra-specific cross of chickpea (Cicer arietinum L.): development of SCAR markers associated with resistance. Theor Appl Genet 112:278-287
21. Santra DK, Tekeoglu M, Ratnaparkhe M, Kaiser WJ, Muehlbauer FJ (2000) Identification and mapping of QTLs conferring resistance to ascochyta blight in chickpea. Crop Sci 40:1606-1612
22. Tekeoglu M, Isik M, Muehlbauer FJ (2004) QTL analysis of ascochyta blight resistance in chickpea. Turk J Agric For 28:183-187
23. Mantri NL, Ford R, Coram TE, Pang ECK (2007) Transcriptional profiling of chickpea genes differentially regulated in response to high-salinity, cold and drought. BMC Genomics 8:303
24. Singh A, Singh IK, Verma PK (2008) Differential transcript accumulation in Cicer arietinum L. in response to a chewing insect Helicoverpa armigera and defence regulators correlate with reduced insect performance. J Exp Bot 59:2379-2392
25. Ashraf N, Ghai D, Barman P, Basu S, Gangisetty N, Mandal MK, Chakraborty N, Datta A, Chakraborty S (2009) Comparative analyses of genotype dependent expressed sequence tags and stress-responsive transcriptome of chickpea wilt illustrate predicted and unexpected genes and novel regulators of plant immunity. BMC Genomics 10:415
26. Huang JY, Jie ZJ, Wang LJ, Yan XH, Wei WH (2011) Analysis of the differential expression of the genes related to Brassica napus seed development. Mol Biol Rep 38:1055-1061
27. Sun P, Guo Y, Qi J, Zhou L, Li X (2010) Isolation and expression analysis of tuberous root development related genes in Rehmannia glutinosa. Mol Biol Rep 37:1069-1079
28. Gu L, Xu D, You T, Li X, Yao S, Chen S, Zhao J, Lan H, Zhang F (2011) Analysis of gene expression by ESTs from suppression subtractive hybridization library in Chenopodium album L. under salt stress. Mol Biol Rep. doi:10.1007/s11033-011-0678-5
29. Sharma K, Mishra AK, Misra RS (2009) Identification and characterization of differentially expressed genes in the resistance reaction in taro infected with Phytophthora colocasiae. Mol Biol Rep 36:1291-1297
30. Coram TE, Pang ECK (2006) Expression profiling of chickpea genes differentially regulated during a resistance response to Ascochyta rabiei. Plant Biotechnol J 4:647-666
31. Cornels H, Ichinose Y, Barz W (2000) Characterization of cDNAs encoding two glycine-rich proteins in chickpea (Cicer arietinum L.): accumulation in response to fungal infection and other stress factors. Plant Sci 154:83-88
32. Ichinose YK, Toyoda BarzW (1999) cDNA cloning and gene expression of three small GTP-binding proteins in defense response of chickpea. Biochim Biophys Acta 1489:462-466
33. Hanselle T, Ichinose Y, Barz W (2001) Biochemical and molecular biological studies on infection (Ascochyta rabiei)-induced thaumatin-like proteins from chickpea plants (Cicer arietinum L.). Z Naturforsch 56:1095-1107
34. Rea G, Metoui O, Infantino A, Federico R, Angelini R (2002) Copper amine oxidase expression in defense responses to wounding and Ascochyta rabiei invasion. Plant Physiol 128: 865-875
35. Boominathan P, Shukla R, Kumar A, Manna D, Negi D, Verma PK, Chattopadhyay D (2004) Long term transcript accumulation during the development of dehydration adaptation in Cicer arietinum. Plant Physiol 135:1608-1620
36. Sambrook J, Russell DW (2001) Molecular cloning-a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor
37. Diatchenko L, Lau YF, Campbell AP, Chenchik A, Moqadam F, Huang B, Lukyanov S, Lukyanov K, Gurskaya N, Sverdlov ED, Siebert PD (1996) Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries. Proc Natl Acad Sci USA 93: 6025-6030
38. Shi J-l, Wang Y-j, Zhu Z-g, Zhang C-h (2010) The EST Analysis of a suppressive subtraction cDNA library of chinese wild Vitis pseudoreticulata inoculated with Uncinula necator. Agric Sci China 9:233-241
39. Fossdal CG, Nagy NE, Johnsen O, Dalen LS (2007) Local and systemic stress responses in Norway spruce: similarities in gene expression between a compatible pathogen interaction and drought stress. Physiol Mol Plant Pathol 70:161-173
40. Thomma BPHJ, Eggermont K, Penninckx IAMA, Mauch-Mani B, Vogelsang R, Cammue BPA, Broekaert WF (1998) Separate jasmonate-dependent and salicylate-dependent defense-response pathways in Arabidopsis are essential for resistance to distinct microbial pathogens. Proc Natl Acad Sci USA 95:15107-15111
41. Xie D, Feys BF, James S, Nieto-Rostro M, Turner JG (1998) COI1: an Arabidopsis gene required for jasmonate-regulated defense and fertility. Science 280:1091-1094
42. Yan J, Zhang C, Gu M, Bai Z, Zhang W, Qi T, Cheng Z, Peng W, Luo H, Nan F, Wang Z, Xie D (2009) The Arabidopsis CORONATINE INSENSITIVE1 protein is a jasmonate receptor. Plant Cell 21:2220-2236
43. Devoto A, Nieto-Rostro M, Xie D, Ellis C, Harmston R, Patrick E, Davis J, Sherratt L, Coleman M, Turner JG (2002) COI1 links jasmonate signalling and fertility to the SCF ubiquitin-ligase complex in Arabidopsis. Plant J 32:457-466
44. Steele CL, Gijzen M, Qutob D, Dixon RA (1999) Molecular characterization of the enzyme catalyzing the aryl migration reaction of isoflavonoid biosynthesis in soybean. Arch Biochem Biophys 367:146-150
45. Aoki T, Akashi T, Ayabe S (2000) Flavonoids of leguminous plants: structure, biological activity, and biosynthesis. J Plant Res 113:475-488
46. Cheng NH, Hirschi KD (2003) Cloning and characterization of CXIP1, a novel PICOT domain containing Arabidopsis protein that associates with CAX1. J Biol Chem 278:6503-6509
47. Munns R (2005) Genes and salt tolerance: bringing them together. New Phytol 167:645-663
48. Fry SC, Smith RC, Renwick KF, Martin DJ, Hodge SK, Matthews KJ (1992) Xyloglucan endotransglycosylase, a new wallloosening enzyme activity from plants. Biochem J 282:821-828
49. Eklof JM, Brumer H (2010) The XTH gene family: an update on enzyme structure, function, and phylogeny in xyloglucan remodeling. Plant Physiol 153:456-466
50. Hunter T (1995) Protein kinases and phosphatases: the yin and yang of protein phosphorylation and signaling. Cell 80:225-236
51. Pandey SP, Somssich IE (2009) The role of WRKY transcription factors in plant immunity. Plant Physiol 150:1648-1655
52. Shimada Y, Wu GJ, Watanabe A (1998) A protein encoded by din1, a dark-inducible and senescence-associated gene of radish, can be imported by isolated chloroplasts and has sequence similarity to sulfide dehydrogenase and other small stress proteins. Plant Cell Physiol 39:139-143
53. He YH, Gan SS (2002) A gene encoding an acyl hydrolase is involved in leaf senescence in Arabidopsis. Plant Cell 14: 805-815
54. Quirino BF, Normanly J, Amasino RM (1999) Diverse range of gene activity during Arabidopsis thaliana leaf senescence includes pathogen-independent induction of defense-related genes. Plant Mol Biol 40:267-278
55. Buchanan-Wollaston V, Ainsworth C (1997) Leaf senescence in Brassica napus: cloning of senescence related genes by subtractive hybridization. Plant Mol Biol 33:821-834
56. Quirino BF, Noh YS, Himelblau E, Amasino RM (2000) Molecular aspects of leaf senescence. Trends Plant Sci 5:278-282
57. Jiang H, Song W, Li A, Yang X, Sun D (2011) Identification of genes differentially expressed in cauliflower associated with resistance to Xanthomonas campestris pv. Campestris. Mol Biol Rep 38:621-629
58. Kufryk G, Hernandez-Prieto MA, Kieselbach T, Miranda H, Vermaas W, Funk C (2008) Association of small CAB-like proteins (SCPs) of Synechocystis sp. PCC 6803 with Photosystem II. Photosynth Res 95:135-145
59. Hecht V, Knowles CL, Schoor JKV, Liew LC, Jones SE, Lambert MJM, Weller JL (2007) Pea LATE BLOOMER1 is a GIGANTEA ortholog with roles in photoperiodic flowering, deetiolation, and transcriptional regulation of circadian clock gene homologs. Plant Physiol 144:648-661
60. Mahalingam R, Gomez-Buitrago A, Eckardt N, Shah N, Guevara-Garcia A, Day P, Raina R, Fedoroff NV (2003) Characterizing the stress/defense transcriptome of Arabidopsis. Genome Biol 4:R20
61. Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E, Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C, Wang GL (2005) Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Plant Physiol 138:105-115