QTL analysis for ascochyta blight resistance in an intraspecific population of chickpea (Cicer arietinum L.)

Theoretical and Applied Genetics

Volumn 107, Issue 7, 2003, Pages 1257-1265

  Flandez Galvez, H ^a,c   Ades, P K ^a   Ford, R ^a   Pang, E C K ^b   Taylor, P W J ^a  

^a UNIVERSITY OF MELBOURNE   (Australia)

^b RMIT UNIVERSITY   (Australia)

^c UNIVERSITY OF THE PHILIPPINES LOS BAÑOS   (Philippines)

Author keywords

Ascochyta blight; Cicer arietinum; Disease resistance; QTLs; RGA

Indexed keywords

BIOMARKERS; CLONING; CULTIVATION; DISEASES; GENES; IMMUNOLOGY;

BLIGHT RESISTANCE;

PLANTS (BOTANY);

ALLELES; ASCOMYCOTA; CHROMOSOME MAPPING; CHROMOSOMES, PLANT; CICER; CROSSES, GENETIC; EPISTASIS, GENETIC; GENES, PLANT; GENETIC MARKERS; IMMUNITY, NATURAL; LINKAGE (GENETICS); PHENOTYPE; PLANT DISEASES; QUANTITATIVE TRAIT LOCI;

ASCOCHYTA; CICER; CICER ARIETINUM;

EID: 0042903944     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-003-1371-4     Document Type: Article

References (63)

1. Acikgoz N, Karaca M, Er C, Meyveci K (1994) Chickpea and lentil production in Turkey. In: Muehlbauer FJ, Kaiser WJ (eds) Expanding the production and use of cool season food legumes. Kluwer Academic Publ, Dordrecht, The Netherlands, pp 388-398
2. Ahmad F, Slinkard AE, Scoles GJ (1988) Investigations into the barrier(s) to interspecific hybridization between Cicer arietinum L. and eight other annual Cicer species. Plant Breed 100:193-198
3. Ajmonemarsan P, Monfredini G, Ludwig WF, Melchinger AE, Franceschini P, Pagnotto G, Motto M (1995) In an elite cross of maize a major quantitative trait locus controls one-fourth of the genetic variation for grain yield. Theor Appl Genet 90:415-424
4. Basten CJ, Weir BS, Zeng ZB (2001) QTL cartographer version 1.15: a reference manual and tutorial for QTL mapping. North Carolina State University, Raleigh, North Carolina
5. Bonierbale MW, Plaisted RL, Pineda O, Tanksley SD (1994) QTL analysis of trichome-mediated insect resistance in potato. Theor Appl Genet 87:973-987
6. Burdon RD (1977) Genetic correlation as a concept for studying genotype-environment interaction in forest tree breeding. Silvae Genet 26:168-175
7. Campbell CL, Madden LV (1990) Temporal analysis of epidemics. I. Description and comparison of disease progress curves. In: Introduction to plant disease epidemiology. John Wiley and Sons, New York, pp 161-202
8. Chen XM, Line RF, Leung H (1998) Genome scanning for resistance-gene analogs in rice, barley and wheat by high-resolution electrophoresis. Theor Appl Genet 97:345-355
9. Cho S, Kumar J, Shultz JL, Anupama K, Tefera F, Muehlbauer FJ (2003) Mapping genes for double podding and other morphological traits in chickpea. Euphytica (in press)
10. Churchil GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 18:963-971
11. Collard BCY, Ades PK, Pang ECK, Brouwer JB, Taylor PWJ (2001) Prospecting for sources of resistance to ascochyta blight in wild Cicer species. Aust Plant Pathol 30:271-276
12. Collard BCY, Pang ECK, Ades PK, Taylor PWJ (2003) Preliminary investigation of QTLs for seedling resistance to ascochyta blight from Cicer echinospermum, a wild relative of chickpea. Theor Appl Genet 107:719-729
13. Dey SK, Singh G (1993) Resistance to ascochyta blight in chickpea - genetic basis. Euphytica 68:147-153
14. Eathington SR, Dudley JW, Rufener II GK (1997) Usefulness of marker-QTL associations in early generation selection. Crop Sci 37:1686-1693
15. Falconer DS (1952) The problem of environment and selection. Am Nat 86:293-298
16. FAOSTAT Database (2002) http://apps.fao.org/
17. Feuillet C, Schachermayr G, Keller B (1997) Molecular cloning of a new receptor-like kinase gene encoded at the Lr10 disease resistance locus of wheat. Plant J 11:45-52
18. Flandez-Galvez H, Ford R, Pang ECK, Taylor PWJ (2003) An intraspecific linkage map of the chickpea (Cicer arietinum L.) genome based on sequence-tagged microsatellite site and resistant-gene analog markers. Theor Appl Genet 106:1447-1456
19. Food and Agriculture Organization of the United Nations (1996) FAO production year book. FAO, Rome
20. Galvez HF, Ford R, Pang ECK, Brouwer JB, Taylor PWJ (2000) Towards durable ascochyta blight resistance in chickpea: understanding of the genetics and resistance mechanisms. In: Durable disease resistance symposium. Wageningen, The Nertherlands, pp 26
21. Galvez HF, Ford R, Pang ECK, Brouwer JB, Taylor PWJ (2003) P478: mapping and QTL analysis of ascochyta blight (Ascochyta rabiei) resistance genes in chickpea. In: Final abstracts guide for the plant, animal and microbe genomes Xth Conference, Applied Biosystems, California, USA, pp 197
22. Hammond-Kosack KE, Jones JDG (1997) Plant disease resistance genes. Annu Rev Plant Physiol Plant Mol Biol 48:575-607
23. Haware MP, Narayana Rao J, Pundir RPS (1992) Evaluation of wild Cicer species for resistance to four chickpea diseases. Int Chickpea Newslett 27:16-18
24. Hüttel B, Santra D, Muehlbauer FJ, Kahl G (2002) Resistance gene analogues of chickpea (Cicer arietinum L.): isolation, genetic mapping and association with a Fusarium resistance gene cluster. Theor Appl Genet 105:479-490
25. Inukai T, Zeigler RS, Sarkarung S, Bronson M, Dung LV, Kinoshita T, Nelson RJ (1996) Development of pre-isogenic lines for rice blast-resistance by marker-aided selection from a recombinant inbred population. Theor Appl Genet 93:560-567
26. Jimenez-Diaz RM, Crino P, Halila MH, Mosconi C, Trapero-Casas AT (1993) Screening for resistance to fusarium wilt and ascochyta blight in chickpea. In: Singh KB, Saxena MC (eds) Breeding for stress tolerance in cool-season food legumes. ICARDA, Aleppo, Syria, pp 77-95
27. Kanazin V, Marek LF, Shoemaker RC (1996) Resistance gene analogs are conserved and clustered in soybean. Proc Natl Acad Sci USA 93:11746-11750
28. Lande R, Thompson R (1990) Efficiency of marker-assisted selection in the improvement of quantitative traits. Genetics 124:743-756
29. Leister D, Ballvora A, Salamini F, Gebhardt C (1996) A PCR-based approach for isolating pathogen resistance genes from potato with a potential for wide application in plants. Nature Genet 14:421-429
30. Li ZK, Pinson SRM, Park WD, Paterson AH, Stansel JW (1997) Epistasis for three grain yield components in rice Oryza sativa L. Genetics 145:453-465
31. McCouch SR, Doerge RW (1995) QTL mapping in rice. Trends Genet 11:482-487
32. Meredith K, Bretag T, Materne M, Brouwer JB (2000) 1999 Victorian advanced chickpea trial results and implications for 2000. In: Kaminskas D, Rawlings S (eds) VIC cropping systems update 2000. Horsham-Longerenong College, Victoria, Australia, pp 77-79
33. Michelmore R (1995) Molecular approaches to manipulation of disease resistance genes. Annu Rev Phytopathol 15:393-427
34. Mohan M, Nai S, Bhagwat A, Krishna TG, Yano M, Bhatia CR, Sasaki T (1997) Genome mapping, molecular markers and marker-assisted selection in crop plants. Mol Breed 3:87-103
35. Nene YL, Reddy MV (1987) Chickpea diseases and their control. In: Saxena MC, Singh KB (eds) The chickpea. CAB International, UK, pp 233-270
36. Paterson AH (1996) Mapping genes responsible for differences in phenotype. In: Paterson AH (ed) Genome mapping in plants. RG Landes Co, Austin Texas, pp 41-54
37. Paterson AH, Tanksley SD, Sorrells ME (1991) DNA markers in plant improvement. Adv Agron 44:39-90
38. Porta-Puglia A, Bernier CC, Jellis GJ, Kaiser WJ, Reddy MV (1994) Screening techniques and sources of resistance to foliar diseases caused by fungi and bacteria in cool season food legumes. Euphytica 73:11-25
39. 171 in chickpea. Euphytica 128:427-433
40. Reddy MV, Singh KB (1992) Registration of five chickpea germplasm lines resistant to ascochyta blight. Crop Sci 32:1079-1080
41. Reddy MV, Singh KB (1984) Evaluation of a world collection of chickpea germplasm accessions for resistance to ascochyta blight. Plant Dis 68:900-901
42. Ribaut JM, Hoisington D (1998) Marker-assisted selection: new tools and strategies. Trends Plant Sci 3:236-239
43. Santra DK, Tekeoglu M, Ratnaparkhe M, Kaiser WJ, Muehlbauer FJ (2000) Identification and mapping of QTLs conferring resistance to ascochyta blight in chickpea. Crop Sci 40:1606-1612
44. SAS Institute Inc (1996) SAS/STAT user's guide. Version 6.12. SAS Institute, Cary, North Carolina
45. Scofield SR, Tobias CM, Rathjen JP, Chang JH, Lavelle, Michelmore RW, Staskawicz BJ (1996) Molecular of gene-for-gene specificity in bacterial speck disease of tomato. Science 274:2063-2065
46. Singh KB (1997a) Chickpea (Cicer arietinum L.). Field Crops Res 53:161-170
47. Singh KB (1997b) Experience with pyramiding of ascochyta blight resistance in kabuli chickpea. In: Udupa SM, Weigand F (eds) DNA markers and breeding for resistance to ascochyta blight in chickpea. Proc Symp "Application of DNA fingerprinting for crop improvement: marker-assisted selection of chickpea for sustainable agriculture in the dry areas". ICARDA, Aleppo, Syria, pp 121-126
48. Singh KB, Reddy MV (1993) Sources of resistance to ascochyta blight in wild Cicer species. Netherlands J Plant Pathol 99:163-167
49. Singh KB, Hawtin GC, Nene YL, Reddy MV (1981) Resistance in chickpeas to Ascochyta rabiei. Plant Dis 65:586-587
50. Stamigna C, Mancinelli R, Crino P, Infantino A, Porta-Puglia A, Saccardo F (1998) Multiple resistance to diseases in wild relatives of chickpea (Cicer arietinum L.). In: Proc 3rd European Conf on Grain Legumes, Valladolid, Spain
51. Stuber CW, Sisco PH (1991) Marker-facilitated transfer of QTL alleles between elite inbred lines and responses in hybrids. Proc Annu Corn Sorghum Res Conf 46:104-113
52. Tabien RE, Li Z, Paterson AH, Marchetti MA, Stansel JW, Pinson SRM (2000) Mapping of four major rice blast resistance genes from 'Lemont' and 'Teqing' and evaluation of their combinatorial effect for field resistance. Theor Appl Genet 101:1215-1225
53. Tabien RE, Li Z, Paterson AH, Marchetti MA, Stansel JW, Pinson SRM (2002) Mapping QTLs for field resistance to the rice blast pathogen and evaluating their individual and combined utility in improved varieties. Theor Appl Genet 105:313-324
54. Tang X, Frederick RD, Zhou J, Halterman DA, Jia Y, Martin GB (1996) Initiation of plant disease resistance by physical interaction of avrPto and Pto kinase. Science 274:2060-2063
55. Tanksley SD (1993) Mapping polygenes. Annu Rev Genet 27:205-233
56. Tekeoglu M, Santra DK, Kaiser WJ, Muehlbauer FJ (2000) Ascochyta blight resistance in three chickpea recombinant inbred line populations. Crop Sci 40:1251-1256
57. Tekeoglu M, Rajesh PN, Muehlbauer FJ (2002) Integration of sequence tagged microsatellite sites to the chickpea genetic map. Theor Appl Genet 105:847-854
58. Udupa SM, Baum M (2002) Genetic dissection of pathotype-specific resistance to ascochyta blight disease in chickpea (Cicer arietinum L.) using microsatellite markers. Theor Appl Genet DOI 10.1007/s00122-002-1168-x
59. Van Rheenen HA, Haware MP (1997) Studies on inheritance of ascochyta blight resistance in chickpea. In: Udupa SM, Weigand F (eds) DNA markers and breeding for resistance to ascochyta blight in chickpea. Proc Symp on "Application of DNA fingerprinting for crop improvement: marker-assisted selection of chickpea for sustainable agriculture in the dry areas". ICARDA, Aleppo, Syria, pp 115-120
60. Wang S, Basten CJ, Zeng ZB (2002) Windows QTL Cartographer Version 1.30 copyright 2001, 2002. Statistical Genetics, North Carolina State University, USA
61. Xing YZ, Tan YF, Hua JP, Sun XL, Xu CG, Zhang Q (2002) Characterization of the main effects, epistatic effects and their environmental interactions of QTLs on the genetic basis of yield traits in rice. Theor Appl Genet 105:248-257
62. Young ND (1996) QTL mapping and quantitative disease resistance in plants. Annu Rev Phytopathol 34:479-501
63. Yu YG, Buss GR, Maroof MAS (1996) Isolation of a superfamily of candidate disease-resistance genes in soybean based on a conserved nucleotide-binding site. Proc Natl Acad Sci USA 93:11751-11756