A late form of nucleophagy in Saccharomyces cerevisiae

PLoS ONE

Volumn 7, Issue 6, 2012, Pages

  Mijaljica, Dalibor ^a   Prescott, Mark ^a   Devenish, Rodney J ^a  

^a MONASH UNIVERSITY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

NITROGEN;

ARTICLE; ATG11 GENE; CELL LABELING; CELL NUCLEUS; CELL VACUOLE; CONFOCAL MICROSCOPY; CONTROLLED STUDY; FLUORESCENCE MICROSCOPY; FUNGAL GENE; IMMUNOBLOTTING; MACROAUTOPHAGY; NEUTROPHIL; NJV1 GENE; NONHUMAN; NUCLEOPHAGOCYTOSIS; REPORTER GENE; SACCHAROMYCES CEREVISIAE; VAC8 GENE;

AUTOPHAGY; BACTERIAL PROTEINS; CELL NUCLEUS; GENE DELETION; GENE SILENCING; GENES, FUNGAL; GENES, REPORTER; LUMINESCENT PROTEINS; NITROGEN; PROTEIN BINDING; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; TIME FACTORS; VACUOLES;

SACCHAROMYCES CEREVISIAE;

EID: 84863095978     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0040013     Document Type: Article

References (50)

1. Klionsky DJ, Cuervo AM, Dunn WA Jr, Levine B, van der Klei I, et al. (2007) How shall I eat thee? Autophagy 3: 413-6.
2. van der Vaart A, Mari M, Reggiori F, (2008) A picky eater: exploring the mechanisms of selective autophagy in human pathologies. Traffic 9: 281-9.
3. Kraft C, Reggiori F, Peter W, (2009) Selective types of autophagy in yeast. Biochim Biophys Acta 1793: 1404-12.
4. Kiel JAKW, (2010) Autophagy in unicellular eukaryotes. Phil Trans R Soc B 365: 819-30.
5. Roberts P, Moshitch-Moshkovitz S, Kvam E, O'Toole E, Winey M, et al. (2003) Piecemeal microautophagy of nucleus in Saccharomyces cerevisiae. Mol Biol Cell 14: 129-41.
6. Kvam E, Goldfrab DS, (2007) Nucleus-vacuole junctions and piecemeal microautophagy of the nucleus in S. cerevisiae. Autophagy 3: 85-92.
7. Krick R, Muehe Y, Prick T, Bremer S, Schlotterhose P, et al. (2008) Piecemeal microautophagy of the nucleus requires the core macroautophagy genes. Mol Biol Cell 19: 4492-505.
8. Farré JC, Krick R, Subramani S, Thumm M, (2009) Turnover of organelles by autophagy in yeast. Curr Opin Cell Biol 21: 522-30.
9. Millen JI, Krick R, Prick T, Thumm M, Goldfarb DS, (2009) Measuring piecemeal microautophagy of the nucleus in Saccharomyces cerevisiae. Autophagy 5: 75-81.
10. Sattler T, Mayer A, (2000) Cell-free reconstitution of microautophagic vacuole invagination and vesicle formation. J Cell Biol 151: 529-38.
11. Uttenweiler A, Schwarz H, Neumann H, Mayer A, (2007) The vacuolar transporter chaperone (VTC) complex is required for microautophagy. Mol Biol Cell 18: 166-75.
12. Uttenweiler A, Mayer A, (2008) Microautophagy in the yeast Saccharomyces cerevisiae. Methods Mol Biol 445: 245-59.
13. Dubouloz F, Deloche O, Wanke V, Cameroni E, De Virgilio C, (2005) The TOR and EGO protein complexes orchestrate microautophagy in yeast. Mol Cell 19: 15-26.
14. Rosado CJ, Mijaljica D, Hatzinisiriou I, Prescott M, Devenish RJ, (2008) Rosella: a fluorescent pH-biosensor for reporting vacuolar turnover of cytosol and organelles in yeast. Autophagy 4: 205-13.
15. Devenish RJ, Prescott M, Turcic K, Mijaljica D, (2008) Monitoring organelle turnover in yeast using fluorescent protein tags. Methods Enzymol 451: 109-31.
16. Pan X, Roberts P, Chen Y, Kvam E, Shulga N, et al. (2000) Nucleus-vacuole junctions in Saccharomyces cerevisiae are formed through the direct interaction of Vac8p and Nvj1p. Mol Biol Cell 11: 2445-57.
17. Niedenthal RK, Riles L, Johnston M, Hegemann JH, (1996) Green fluorescent protein as a marker for gene expression and subcellular localization in budding yeast. Yeast 12: 773-86.
18. Kirisako T, Ichimura Y, Okada H, Kabeya Y, Mizushima N, et al. (2000) The reversible modification regulates the membrane-binding state of Apg8/Aut7 essential for autophagy and the cytoplasm to vacuole targeting pathway. J Cell Biol 151: 263-76.
19. Sikorski RS, Hieter P, (1989) A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122: 19-27.
20. Bauer C, Herzog V, Bauer MF, (2001) Improved technique for electron microscope visualization of yeast membrane structures. MicroscMicroanal 7: 530-34.
21. Prescott M, Higuti T, Nagley P, Devenish RJ, (1995) The functional expression of a rat cDNA encoding OSCP in the yeast Saccharomyces cerevisiae. Biochem Biophys Res Commun 207: 943-9.
22. Kean LS, Fuller RS, Nichols JW, (1993) Retrograde lipid traffic in yeast: identification of two distinct pathways for internalization of fluorescent-labeled phosphatidylcholine from the plasma membrane. J Cell Biol 123: 1403-19.
23. Cao Y, Klionsky DJ, (2007) Physiological functions of Atg6/Beclin 1: a unique autophagy-related protein. Cell Res 17: 839-49.
24. Tang F, Peng Y, Nau JJ, Kauffman EJ, Weisman LS, (2006) Vac8p, an armadillo repeat protein, coordinates vacuole inheritance with multiple vacuolar processes. Traffic 7: 1368-77.
25. Suzuki K, Ohsumi Y, (2007) Molecular machinery of autophagosome formation in yeast, Saccharomyces cerevisiae. FEBS Lett 581: 2156-61.
26. Nakatogawa H, Suzuki K, Kamada Y, Ohsumi Y, (2009) Dynamics and diversity in autophagy mechanisms: lessons from yeast. Nat Rev Mol Cell Biol 10: 458-67.
27. Teter SA, Eggerton KP, Scott SV, Kim J, Fischer AM, et al. (2001) Degradation of lipid vesicles in the yeast vacuole requires function of Cvt17, a putative lipase. J. Biol. Chem 276: 2083-2087.
28. Epple UD, Eskelinen EL, Thumm M, (2003) Intravacuolar membrane lysis in Saccharomyces cerevisiae. Does vacuolar targeting of Cvt17/Aut5p affect its function? J Biol Chem 278: 7810-21.
29. Yang Z, Huang J, Geng J, Nair U, Klionsky DJ, (2006) Atg22 recycles amino acids to link the degradative and recycling functions of autophagy. Mol Biol Cell 17: 5094-104.
30. Muller O, Neumann H, Bayer MJ, Mayer A, (2002) Role of the Vtc proteins in V-ATPase stability and membrane trafficking. J Cell Sci 116: 1107-15.
31. Mijaljica D, Prescott M, Devenish RJ, (2010) The intricacy of nuclear membrane dynamics during nucleophagy. Nucleus 1: 213-23.
32. Nakatogawa H, Ichimura Y, Ohsumi Y, (2007) Atg8, a ubiquitin-like protein required for autophagosome formation, mediates membrane tethering and hemifusion. Cell 130: 165-78.
33. Subramani S, Farré JC, (2007) A ubiquitin-like protein involved in membrane fusion. Cell 130: 18-20.
34. Yang Z, Klionsky DJ, (2009) An overview of the molecular mechanism of autophagy. Curr Top Microbiol Immunol 335: 1-32.
35. Hanada T, Noda NN, Satomi Y, Ichimura Y, Fujioka Y, et al. (2007) The Atg12-Atg5 conjugate has a novel E3-like activity for protein lipidation in autophagy. J Biol Chem 282: 37298-302.
36. He C, Song H, Yorimitsu T, Monastyrska I, Yen WL, et al. (2006) Recruitment of Atg9 to the preautophagosomal structure by Atg11 is essential for selective autophagy in budding yeast. J Cell Biol 175: 925-35.
37. Shintani T, Klionsky DJ, (2004) Autophagy in health and disease: a double-edged sword. Science 306: 990-5.
38. Sekito T, Kawamata T, Ichikawa R, Suzuki K, Ohsumi Y, (2009) Atg17 recruits Atg9 to organize the pre-autophagosomal structure. Genes Cells 14: 525-38.
39. Legakis JE, Yen WL, Klionsky DJ, (2007) A cycling protein complex required for selective autophagy. Autophagy 3: 422-32.
40. Yen WL, Legakis JE, Nair U, Klionsky DJ, (2007) Atg27 is required for autophagy-dependent cycling of Atg9. Mol Biol Cell 18: 581-93.
41. Xie Z, Klionsky DJ, (2007) Autophagosome formation: core machinery and adaptations. Nat Cell Biol 9: 1102-9.
42. Reggiori F, Wang CW, Nair U, Shintani T, Abeliovich H, et al. (2004) Early stages of the secretory pathway, but not endosomes, are required for Cvt vesicle and autophagosome assembly in Saccharomyces cerevisiae. Mol Biol Cell 15: 2189-204.
43. Olkkonen VM, Levine TP, (2004) Oxysterol binding proteins: in more than one place at one time? Biochem Cell Biol 82: 87-98.
44. Kvam E, Goldfarb DS, (2004) Nvj1p is the outer-nuclear-membrane receptor for oxysterol-binding protein homolog Osh1p in Saccharomyces cerevisiae. J Cell Sci 117: 4959-68.
45. Kvam E, Gable K, Dunn TM, Goldfarb DS, (2005) Targeting of Tsc13p to nucleus-vacuole junctions: a role for very-long-chain fatty acids in the biogenesis of microautophagic vesicles. Mol Biol Cell 16: 3987-98.
46. Krick R, Muehe Y, Prick T, Bredschneider M, Bremer S, et al. (2009) Piecemeal microautophagy of the nucleus: genetic and morphological traits. Autophagy 5: 270-272.
47. Siniossoglou S, Santos-Rosa H, Rappsilber J, Mann M, Hurt E, (1998) A novel complex of membrane proteins required for formation of a spherical nucleus. EMBO J 17: 6449-64.
48. Santos-Rosa H, Leung J, Grimsey N, Peak-Chew S, Siniossoglou S, (2005) The yeast lipin Smp2 couples phospholipid biosynthesis to nuclear membrane growth. EMBO J 24: 1931-41.
49. Siniossoglou S, (2009) Lipins, lipids and nuclear envelope structure. Traffic 10: 1181-7.
50. Pereira C, Chaves S, Alves S, Salin B, Camougrand N, et al. (2010) Mitochondrial degradation in acetic acid-induced yeast apoptosis: the role of Pep4 and the ADP/ATP carrier. Mol Microbiol 76: 1398-410.