Genetic association of Phosphodiesterase 1B (PDE1B) with carcass traits in Korean cattle

Molecular Biology Reports

Volumn 39, Issue 4, 2012, Pages 4869-4874

  Shin, Sungchul ^a   Heo, Jaepil ^a   Yeo, Jungsou ^b   Lee, Chaeyoung ^c   Chung, Euiryong ^a  

^a Sangji University   (South Korea)

^b Yeungnam University   (South Korea)

^c Soongsil University   (South Korea)

Author keywords

Beef cattle; Carcass traits; Genetic marker; PDE1B; Single nucleotide polymorphism

Indexed keywords

GENOMIC DNA; PHOSPHODIESTERASE; CYCLIC NUCLEOTIDE PHOSPHODIESTERASE 1; NUCLEOTIDE;

ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; BACKFAT THICKNESS; BEEF CATTLE; CARCASS; CARCASS TRAIT; CARCASS WEIGHT; CONTROLLED STUDY; EXON; GENE; GENE FUNCTION; GENETIC ASSOCIATION; GENETIC TRAIT; GENOTYPE; INTRON; LIVE WEIGHT; LONGISSIMUS DORSI MUSCLE AREA; MEAT; NONHUMAN; NUCLEOTIDE SEQUENCE; PHOSPHODIESTERASE 1B GENE; PHYSICAL PARAMETERS; QUANTITATIVE TRAIT LOCUS; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SINGLE NUCLEOTIDE POLYMORPHISM; ANIMAL; CATTLE; GENE FREQUENCY; GENETIC MARKER; GENETICS; HAPLOTYPE; POLYMERASE CHAIN REACTION; QUANTITATIVE TRAIT; SOUTH KOREA; STANDARD;

ANIMALIA; BOS; BOVINAE;

ANIMALS; CATTLE; CYCLIC NUCLEOTIDE PHOSPHODIESTERASES, TYPE 1; GENE FREQUENCY; GENETIC ASSOCIATION STUDIES; GENETIC MARKERS; HAPLOTYPES; MEAT; NUCLEOTIDES; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; POLYMORPHISM, SINGLE NUCLEOTIDE; QUANTITATIVE TRAIT, HERITABLE; REPUBLIC OF KOREA;

EID: 84863091438     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-011-1280-6     Document Type: Article

References (17)

1. Barendse W, Bunch R, Thomas M, Armitage S, Baud S, Donaldson N (2004) The TG5 thyroglobulin gene test for a marbling quantitative trait loci evaluated in feedlot cattle. Aust J Exp Agr 44:669-674
2. Beavo JA, Houslay MD (1990) Cyclic nucleotide phosphodiesterases: Structure, regulation and drug action. John Wiley and Sons, London, pp 1-296
3. Casas E, Shackelford SD, Keele JW, Stone RT, Kappes SM, Koohmaraie M (2000) Quantitative trait loci affection growth and carcass composition of cattle segregating alternate forms of myostatin. J Anim Sci 78:560-569
4. Davis GP, Hetzel DJS, Corbet NJ, Scacheri S, Lowden S, Renaud J, Mayne C, Stevenson R, Moore SS, Byrne K (1998) The mapping of quantitative trait loci for birth weight in a tropical beef herd. In: Proceedings of the 6th world congress on genetics applied to livestock production, vol 26. Armidale, Australia, 441-444
5. Dekkers JCM (2004) Commercial application of marker-and gene assisted selection in livestock: Strategies and lessons. J Anim Sci 82(E. Suppl.):E313-E328
6. Gutierrez-Gil B, Wiener P, Nute GR, Burton D, Gill JL, Wood JD, Williams JL (2008) Detection of quantitative trait loci for meat quality traits in cattle. Anim Genet 39:51-61
7. Li C, Basarab J, Snelling WM, Benkel B, Murdoch B, Kneeland J, Hansen C, Moore SS (2002) Identical by descent haplotype sharing analysis: Application in fine mapping of QTLs for birth weight in commercial lines of Bos taurus. In: Proceedings of the 7th world congress genetics applied to livestock production, Mont-pellier, France, 481-484
8. Li C, Basarab J, Snelling WM, Benkel B, Murdoch B, Hansen C, Moore SS (2004) Identification and fine mapping of quantitative trait loci for backfat on bovine chromosomes 2, 5, 6, 19, 21, and 23 in a commercial line of Bos taurus. J Anim Sci 82:967-972
9. Miller SA, Dykes DD, Polesky HF (1988) A simple salting out procedure for extracting DNA from human nucleated cell. Nucleic Acids Res 16:1215
10. Page BT, Casas E, Quaas RL, Thallman RM, Wheeler TL, Shackelford SD, Kooharaie M, White SN, Keele JW, Smith TPL (2004) Association of markers in the bovine CAPN1 gene with meat tenderness in large crossbred populations that sample influential industry sires. J Anim Sci 82:3474-3481
11. Polineni P, Aragonda P, Xavier SR, Furuta R, Adelson DL (2006) The bovine QTL viewer: A web accessible database of bovine quantitative trait loci. BMC Bioinformatics 7:283
12. Schenkel FS, Miller SP, Ye X, Moore SS, Nkrumah JD, Li C, Yu J, Mandell IB, Wilton JW, Williams JL (2005) Association of single nucleotide polymorphisms in the leptin gene with carcass and meat quality traits of beef cattle. J Anim Sci 83:2009-2020
13. Shin SC, Chung ER (2007) Association of SNP marker in the leptin gene with carcass and meat quality traits in Korean cattle. Asian-Aust. J Anim Sci 20:1-6
14. Stone RT, Deele JW, Shackelford SD, Kappes SM, KoohmaraieM (1999)Aprimary screen of the bovine genome for quantitative trait loci affecting carcass and growth traits. J Anim Sci 77:1379-1384
15. Stone RT, Casas E, Smith TPL, Keele JW, Harhay G, Bennett GL, Koohmaraie M, Wheeler TL, Shackelford SD, Snelling WM (2005) Identification of genetic markers for fat deposition and meat tenderness on bovine chromosome 5: Development of a low-density single nucleotide polymorphism map. J Anim Sci 83:2280-2288
16. Thaller G, Kramer W, Winter A, Kaupe B, Erhardt G, Fries R (2003) Effects of DGAT1 variants on milk production traits in German cattle breeds. J Anim Sci 81:1911-1918
17. White SN, Casas E, Wheeler TL, Shackelford SD, Koohmaraie M, Riley DG, Chase CC Jr, Jhonson DD, Keele JW, Smith TPL (2005) A new single nucleotide polymorphism in CAPN1 extends the current tenderness marker test to include cattle of Bos indicus, Bos taurus, and crossbred descent. J Anim Sci 83:2001-2008