-
1
-
-
0036484368
-
Phytochrome photosensory signalling networks
-
Quail PH, (2002a) Phytochrome photosensory signalling networks. Nature Reviews Molecular Cell Biology 3: 85-93.
-
(2002)
Nature Reviews Molecular Cell Biology
, vol.3
, pp. 85-93
-
-
Quail, P.H.1
-
2
-
-
0036531885
-
Photosensory perception and signalling in plant cells: new paradigms?
-
Quail PH, (2002b) Photosensory perception and signalling in plant cells: new paradigms? Current Opinion in Cell Biology 14: 180-188.
-
(2002)
Current Opinion in Cell Biology
, vol.14
, pp. 180-188
-
-
Quail, P.H.1
-
3
-
-
0000820553
-
Photocontrol of flavonoid biosynthesis
-
In: Kendrick RE, Kronenberg GHM, editors, editors
-
Beggs CJ, Wellmann E, (1994) Photocontrol of flavonoid biosynthesis. In: Kendrick RE, Kronenberg GHM, editors. pp. 733-751 editors. Photomorphogenesis in Plants. 2nd Edition. Netherlands: Kluwer Academi Publishers.
-
(1994)
, pp. 733-751
-
-
Beggs, C.J.1
Wellmann, E.2
-
4
-
-
0035652129
-
Is provitamin D a UV-B receptor in plants?
-
Björn LO, Wang T, (2001) Is provitamin D a UV-B receptor in plants? Plant Ecology 154: 1-8.
-
(2001)
Plant Ecology
, vol.154
, pp. 1-8
-
-
Björn, L.O.1
Wang, T.2
-
6
-
-
0141480569
-
Cryptochrome structure and signal transduction
-
Lin C, Shalitin D, (2003) Cryptochrome structure and signal transduction. Annual Review of Plant Biology 54: 469-496.
-
(2003)
Annual Review of Plant Biology
, vol.54
, pp. 469-496
-
-
Lin, C.1
Shalitin, D.2
-
7
-
-
0037249267
-
Identification of a new cryptochrome class. Structure, function, and evolution
-
Brudler R, Hitomi K, Daiyasu H, Toh H, Kucho K, et al. (2003) Identification of a new cryptochrome class. Structure, function, and evolution. Molecular Cell 11: 59-67.
-
(2003)
Molecular Cell
, vol.11
, pp. 59-67
-
-
Brudler, R.1
Hitomi, K.2
Daiyasu, H.3
Toh, H.4
Kucho, K.5
-
8
-
-
0034980776
-
The phototropin family of photoreceptors
-
Briggs WR, Beck CF, Cashmore AR, Christie JM, Hughes J, et al. (2001) The phototropin family of photoreceptors. The Plant Cell 13: 993-997.
-
(2001)
The Plant Cell
, vol.13
, pp. 993-997
-
-
Briggs, W.R.1
Beck, C.F.2
Cashmore, A.R.3
Christie, J.M.4
Hughes, J.5
-
9
-
-
37649013299
-
AUREOCHROME, a photoreceptor required for photomorphogenesis in stramenopiles
-
Takahashi F, Yamagata D, Ishikawa M, Fukamatsu Y, Ogura Y, et al. (2007) AUREOCHROME, a photoreceptor required for photomorphogenesis in stramenopiles. Proc Natl Acad Sci USA 104: 19625-19630.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 19625-19630
-
-
Takahashi, F.1
Yamagata, D.2
Ishikawa, M.3
Fukamatsu, Y.4
Ogura, Y.5
-
10
-
-
67749120192
-
Distribution and phylogeny of the blue light receptors aureochromes in eukaryotes
-
Ishikawa M, Takahashi F, Nozaki H, Nagasato C, Motomura T, et al. (2009) Distribution and phylogeny of the blue light receptors aureochromes in eukaryotes. Planta 230: 543-552.
-
(2009)
Planta
, vol.230
, pp. 543-552
-
-
Ishikawa, M.1
Takahashi, F.2
Nozaki, H.3
Nagasato, C.4
Motomura, T.5
-
11
-
-
0037115913
-
Photolyase/cryptochrome blue-light photoreceptors use photon energy to repair DNA and reset the circadian clock
-
Thompson CL, Sancar A, (2002) Photolyase/cryptochrome blue-light photoreceptors use photon energy to repair DNA and reset the circadian clock. Oncogene 21: 9043-9056.
-
(2002)
Oncogene
, vol.21
, pp. 9043-9056
-
-
Thompson, C.L.1
Sancar, A.2
-
12
-
-
0003602067
-
Light and Photosynthesis in Aquatic Ecosystems
-
2nd Ed
-
Kirk JTO, (1994) Light and Photosynthesis in Aquatic Ecosystems. 2nd Ed. Cambridge: Cambridge University Press.
-
(1994)
-
-
Kirk, J.T.O.1
-
13
-
-
84968566402
-
How phytochrome acts-perspectives on the continuing quest
-
In Shropshire W, Mohr H, editors, New York: Springer-Verlag
-
Hendricks SB, WJ van der Woude, (1983) How phytochrome acts-perspectives on the continuing quest. In Shropshire W, Mohr H, editors. Photomorphogenesis, Encyclopedia of Plant Physiology, Vol 16A. New York: Springer-Verlag pp. 4-23.
-
(1983)
Photomorphogenesis, Encyclopedia of Plant Physiology
, vol.16 A
, pp. 4-23
-
-
Hendricks, S.B.1
van der Woude, W.J.2
-
15
-
-
0000192950
-
Phototropism in Vaucheria geminata I. The action spectrum
-
Kataoka H, (1975a) Phototropism in Vaucheria geminata I. The action spectrum. Plant Cell Physiology 16: 427-437.
-
(1975)
Plant Cell Physiology
, vol.16
, pp. 427-437
-
-
Kataoka, H.1
-
16
-
-
0000192951
-
Phototropism in Vaucheria geminate II. The mechanism of bending and branching
-
Kataoka H, (1975b) Phototropism in Vaucheria geminate II. The mechanism of bending and branching. Plant Cell Physiology 16: 439-448.
-
(1975)
Plant Cell Physiology
, vol.16
, pp. 439-448
-
-
Kataoka, H.1
-
17
-
-
0000220629
-
Negative phototropism of Vaucheria terrestris regulated by calcium. II. Inhibition by Ca2+-channel blockers and mimesis by A23187
-
Kataoka H, (1990) Negative phototropism of Vaucheria terrestris regulated by calcium. II. Inhibition by Ca2+-channel blockers and mimesis by A23187. Plant Cell Physiology 31: 933-940.
-
(1990)
Plant Cell Physiology
, vol.31
, pp. 933-940
-
-
Kataoka, H.1
-
18
-
-
0035047611
-
Blue light-induced branching in Vaucheria. Requirement of nuclear accumulation in the irradiated region
-
Takahashi F, Hishinuma T, Kataoka H, (2001) Blue light-induced branching in Vaucheria. Requirement of nuclear accumulation in the irradiated region. Plant Cell Physiology 42: 274-285.
-
(2001)
Plant Cell Physiology
, vol.42
, pp. 274-285
-
-
Takahashi, F.1
Hishinuma, T.2
Kataoka, H.3
-
19
-
-
3142666531
-
Studien über die Phototaxis der Diatomeen
-
Nultsch W, (1956) Studien über die Phototaxis der Diatomeen. Archiv fur Protistenkunde 101: 1-68.
-
(1956)
Archiv Fur Protistenkunde
, vol.101
, pp. 1-68
-
-
Nultsch, W.1
-
20
-
-
0001331832
-
Tropistic responses of zygotes of the Fucaceae to polarized light
-
Jaffe LF, (1958) Tropistic responses of zygotes of the Fucaceae to polarized light. Experimental cell research 15: 282-299.
-
(1958)
Experimental Cell Research
, vol.15
, pp. 282-299
-
-
Jaffe, L.F.1
-
21
-
-
0031432050
-
Induction of polarity in fucoid zygotes
-
Kropf DL, (1997) Induction of polarity in fucoid zygotes. Plant Cell 9: 1011-1020.
-
(1997)
Plant Cell
, vol.9
, pp. 1011-1020
-
-
Kropf, D.L.1
-
22
-
-
84985201139
-
Critical levels of light and temperature regulating the gametogenesis of three Laminaria species (phaeophyceae)
-
Lüning K, (1980) Critical levels of light and temperature regulating the gametogenesis of three Laminaria species (phaeophyceae). Journal of Phycology 16: 1-15.
-
(1980)
Journal of Phycology
, vol.16
, pp. 1-15
-
-
Lüning, K.1
-
23
-
-
0034826014
-
Algal biotechnology industries and research activities in China
-
Tseng CK, (2001) Algal biotechnology industries and research activities in China. Jouranl of Applied Phycology 13: 375-380.
-
(2001)
Jouranl of Applied Phycology
, vol.13
, pp. 375-380
-
-
Tseng, C.K.1
-
24
-
-
84986853293
-
Chromatic adaptation of photosynthesis in benthic marine algae: an examination of its ecological significance using a theoretical model
-
Dring MJ, (1981) Chromatic adaptation of photosynthesis in benthic marine algae: an examination of its ecological significance using a theoretical model. Limnology and Oceanography 26: 271-284.
-
(1981)
Limnology and Oceanography
, vol.26
, pp. 271-284
-
-
Dring, M.J.1
-
25
-
-
0000526099
-
Reproduction induced by blue light in female gametophytes of Laminaria saccharina
-
Lüning K, Dring MJ, (1972) Reproduction induced by blue light in female gametophytes of Laminaria saccharina. Planta 104: 252-256.
-
(1972)
Planta
, vol.104
, pp. 252-256
-
-
Lüning, K.1
Dring, M.J.2
-
26
-
-
0001355249
-
Reproduction, growth and photosynthesis of gametophytes of Laminaria saccharina grown in blue and red light
-
Lüning K, (1975) Reproduction, growth and photosynthesis of gametophytes of Laminaria saccharina grown in blue and red light. Marine Biology 29: 195-200.
-
(1975)
Marine Biology
, vol.29
, pp. 195-200
-
-
Lüning, K.1
-
27
-
-
58149225118
-
Effects of blue light on gametophyte development of Laminaria japonica (Laminariales, Phaeophyta)
-
Shi CJ, Kataoka H, Duan DL, (2005) Effects of blue light on gametophyte development of Laminaria japonica (Laminariales, Phaeophyta). Chinese Journal of Oceanology and Limnology 23: 323-329.
-
(2005)
Chinese Journal of Oceanology and Limnology
, vol.23
, pp. 323-329
-
-
Shi, C.J.1
Kataoka, H.2
Duan, D.L.3
-
28
-
-
84986779731
-
Stimulation of light-saturated photosynthesis in Laminaria (Phaeophyta) by blue light
-
Dring MJ, (1989) Stimulation of light-saturated photosynthesis in Laminaria (Phaeophyta) by blue light. Journal of Phycology 25: 254-258.
-
(1989)
Journal of Phycology
, vol.25
, pp. 254-258
-
-
Dring, M.J.1
-
29
-
-
84989051877
-
Interaction of blue light and inorganic carbon supply in the control of light-saturated photosynthesis in brown algae
-
Forster RM, Dring MJ, (1992) Interaction of blue light and inorganic carbon supply in the control of light-saturated photosynthesis in brown algae. Plant Cell and Environment 15: 241-247.
-
(1992)
Plant Cell and Environment
, vol.15
, pp. 241-247
-
-
Forster, R.M.1
Dring, M.J.2
-
30
-
-
0028151797
-
Influence of blue light on the photosynthetic capacity of marine plants from different taxonomic, ecological and morphological groups
-
Forster RM, Dring MJ, (1994) Influence of blue light on the photosynthetic capacity of marine plants from different taxonomic, ecological and morphological groups. European Journal of Phycology 29: 21-27.
-
(1994)
European Journal of Phycology
, vol.29
, pp. 21-27
-
-
Forster, R.M.1
Dring, M.J.2
-
31
-
-
77954534152
-
Effect of blue light on early sporophyte development of Saccharina japonica (Phaeophyta)
-
Wang WJ, Sun XT, Wang FJ, (2010) Effect of blue light on early sporophyte development of Saccharina japonica (Phaeophyta). Marine Biology 157: 1811-1817.
-
(2010)
Marine Biology
, vol.157
, pp. 1811-1817
-
-
Wang, W.J.1
Sun, X.T.2
Wang, F.J.3
-
32
-
-
84985201139
-
Critical levels of light and temperature regulating the gametogenesis of the three Laminaria species (Phaeophyceae)
-
Lüning K, (1980) Critical levels of light and temperature regulating the gametogenesis of the three Laminaria species (Phaeophyceae). Journal of Phycology 16: 1-15.
-
(1980)
Journal of Phycology
, vol.16
, pp. 1-15
-
-
Lüning, K.1
-
34
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B, (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nature Methods 5: 621-628.
-
(2008)
Nature Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
35
-
-
50649089207
-
RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
-
Marioni JC, Mason CE, Mane SM, Stephens M, Gilad Y, (2008) RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Research 18: 1509-1517.
-
(2008)
Genome Research
, vol.18
, pp. 1509-1517
-
-
Marioni, J.C.1
Mason, C.E.2
Mane, S.M.3
Stephens, M.4
Gilad, Y.5
-
36
-
-
45549088326
-
The transcriptional landscape of the yeast genome defined by RNA sequencing
-
Nagalakshmi U, Wang Z, Waern K, Shou C, Raha D, et al. (2008) The transcriptional landscape of the yeast genome defined by RNA sequencing. Science 320: 1344-1349.
-
(2008)
Science
, vol.320
, pp. 1344-1349
-
-
Nagalakshmi, U.1
Wang, Z.2
Waern, K.3
Shou, C.4
Raha, D.5
-
37
-
-
46249096804
-
Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
-
Wilhelm BT, MargueratS, Watt S, Schubert F, Wood V, et al. (2008) Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. Nature 453: 1239-1243.
-
(2008)
Nature
, vol.453
, pp. 1239-1243
-
-
Wilhelm, B.T.1
Marguerat, S.2
Watt, S.3
Schubert, F.4
Wood, V.5
-
38
-
-
62549126083
-
Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing
-
Yassour M, Kaplan T, Fraser HB, Levin JZ, Pfiffner J, et al. (2009) Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing. Proc Natl Acad Sci USA 106: 3264-3269.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 3264-3269
-
-
Yassour, M.1
Kaplan, T.2
Fraser, H.B.3
Levin, J.Z.4
Pfiffner, J.5
-
39
-
-
46249103973
-
Stem cell transcriptome profiling via massive-scale mRNA sequencing
-
Cloonan N, Forrest ARR, Kolle G, Gardiner BBA, Faulkner GJ, et al. (2008) Stem cell transcriptome profiling via massive-scale mRNA sequencing. Nature Methods 5: 613-619.
-
(2008)
Nature Methods
, vol.5
, pp. 613-619
-
-
Cloonan, N.1
Forrest, A.R.R.2
Kolle, G.3
Gardiner, B.B.A.4
Faulkner, G.J.5
-
40
-
-
56749098074
-
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
-
Pan Q, Shai O, Lee LJ, Frey J, Blencowe BJ, (2008) Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nature Genetics 40: 1413-1415.
-
(2008)
Nature Genetics
, vol.40
, pp. 1413-1415
-
-
Pan, Q.1
Shai, O.2
Lee, L.J.3
Frey, J.4
Blencowe, B.J.5
-
41
-
-
47649124124
-
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome
-
Sultan M, Schulz MH, Richard H, Magen A, Klingenhoff A, et al. (2008) A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. Science 321: 956-960.
-
(2008)
Science
, vol.321
, pp. 956-960
-
-
Sultan, M.1
Schulz, M.H.2
Richard, H.3
Magen, A.4
Klingenhoff, A.5
-
42
-
-
56549101959
-
Alternative isoform regulation in human tissue transcriptomes
-
Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, et al. (2008) Alternative isoform regulation in human tissue transcriptomes. Nature 456: 470-476.
-
(2008)
Nature
, vol.456
, pp. 470-476
-
-
Wang, E.T.1
Sandberg, R.2
Luo, S.3
Khrebtukova, I.4
Zhang, L.5
-
43
-
-
42749087226
-
Highly integrated single-base resolutionmaps of the epigenome in Arabidopsis
-
Lister R, O' Malley RC, Tonti-Filippini J, Gregory BD, Berry CC, et al. (2008) Highly integrated single-base resolutionmaps of the epigenome in Arabidopsis. Cell 133: 523-536.
-
(2008)
Cell
, vol.133
, pp. 523-536
-
-
Lister, R.1
O' Malley, R.C.2
Tonti-Filippini, J.3
Gregory, B.D.4
Berry, C.C.5
-
44
-
-
63849342015
-
Massively parallel sequencing of the polyadenylated transcriptome of C. elegans
-
Hillier LW, Reinke V, Green P, Hirst M, Marra MA, et al. (2009) Massively parallel sequencing of the polyadenylated transcriptome of C. elegans. Genome Research 19: 657-666.
-
(2009)
Genome Research
, vol.19
, pp. 657-666
-
-
Hillier, L.W.1
Reinke, V.2
Green, P.3
Hirst, M.4
Marra, M.A.5
-
45
-
-
77951871117
-
Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome
-
Zhang G, Guo G, Hu X, Zhang Y, Li Q, et al. (2010) Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome. Genome Research 20: 646-654.
-
(2010)
Genome Research
, vol.20
, pp. 646-654
-
-
Zhang, G.1
Guo, G.2
Hu, X.3
Zhang, Y.4
Li, Q.5
-
46
-
-
77950545365
-
Characterization of transcriptional complexity during Berry development in Vitis vinifera using RNA-seq
-
Zenoni S, Ferrarini A, Giacomelli E, Xumerle L, Fasoli M, et al. (2010) Characterization of transcriptional complexity during Berry development in Vitis vinifera using RNA-seq. Plant Physiology 152: 1787-1795.
-
(2010)
Plant Physiology
, vol.152
, pp. 1787-1795
-
-
Zenoni, S.1
Ferrarini, A.2
Giacomelli, E.3
Xumerle, L.4
Fasoli, M.5
-
47
-
-
77953600890
-
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types
-
Guo SG, Zheng Y, Joung JG, Liu SQ, Zhang ZH, et al. (2010) Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics 11: 384.
-
(2010)
BMC Genomics
, vol.11
, pp. 384
-
-
Guo, S.G.1
Zheng, Y.2
Joung, J.G.3
Liu, S.Q.4
Zhang, Z.H.5
-
48
-
-
77955487334
-
Deep sequencing-based transcriptome profiling analysis of bacteria-challenged Lateolabrax japonicus reveals insight into the immune-relevant genes in marine fish
-
Xiang LX, He D, Dong WR, Zhang YW, Shao JZ, (2010) Deep sequencing-based transcriptome profiling analysis of bacteria-challenged Lateolabrax japonicus reveals insight into the immune-relevant genes in marine fish. BMC Genomics 11: 472.
-
(2010)
BMC Genomics
, vol.11
, pp. 472
-
-
Xiang, L.X.1
He, D.2
Dong, W.R.3
Zhang, Y.W.4
Shao, J.Z.5
-
49
-
-
78649488563
-
The developmental dynamics of the maize leaf transcriptome
-
Li PH, Ponnala L, Gandotra N, Wang L, Si YQ, et al. (2010) The developmental dynamics of the maize leaf transcriptome. Nature Genetics 42: 1060-1067.
-
(2010)
Nature Genetics
, vol.42
, pp. 1060-1067
-
-
Li, P.H.1
Ponnala, L.2
Gandotra, N.3
Wang, L.4
Si, Y.Q.5
-
50
-
-
77956107299
-
Survey of the Transcriptome of Aspergillus oryzae via Massively Parallel mRNA Sequencing
-
Wang B, Guo GW, Wang C, Lin Y, Wang XN, et al. (2010) Survey of the Transcriptome of Aspergillus oryzae via Massively Parallel mRNA Sequencing. Ncleic Acids Research 38: 5075-5087.
-
(2010)
Ncleic Acids Research
, vol.38
, pp. 5075-5087
-
-
Wang, B.1
Guo, G.W.2
Wang, C.3
Lin, Y.4
Wang, X.N.5
-
51
-
-
77957903728
-
Transcriptome and expression profiling analysis revealed changes of multiple signaling pathways involved in immunity in the large yellow croaker during Aeromonas hydrophila infection
-
Mu YN, Ding F, Cui P, Ao JQ, Hu SN, et al. (2010) Transcriptome and expression profiling analysis revealed changes of multiple signaling pathways involved in immunity in the large yellow croaker during Aeromonas hydrophila infection. BMC Genomics 11: 506.
-
(2010)
BMC Genomics
, vol.11
, pp. 506
-
-
Mu, Y.N.1
Ding, F.2
Cui, P.3
Ao, J.Q.4
Hu, S.N.5
-
52
-
-
77954450225
-
De novo characterization of a whitefly transcriptome and analysis of its gene expression during development
-
Wang XW, Luan JB, Li JM, Bao YY, Zhang CX, et al. (2010) De novo characterization of a whitefly transcriptome and analysis of its gene expression during development. BMC Genomics 11: 400.
-
(2010)
BMC Genomics
, vol.11
, pp. 400
-
-
Wang, X.W.1
Luan, J.B.2
Li, J.M.3
Bao, Y.Y.4
Zhang, C.X.5
-
54
-
-
77951935233
-
Orchestrated transcription of biological processes in the marine picoeukaryote Ostreococcus exposed to light/dark cycles
-
Monnier A, Liverani S, Bouvet R, Jesson B, Smith J, et al. (2010) Orchestrated transcription of biological processes in the marine picoeukaryote Ostreococcus exposed to light/dark cycles. BMC Genomics 11: 192.
-
(2010)
BMC Genomics
, vol.11
, pp. 192
-
-
Monnier, A.1
Liverani, S.2
Bouvet, R.3
Jesson, B.4
Smith, J.5
-
55
-
-
0035542770
-
Light control of Arabidopsis development entails coordinated regulation of genome expression and cellular pathways
-
Ma L, Li J, Qu L, Hager J, Chen Z, et al. (2001) Light control of Arabidopsis development entails coordinated regulation of genome expression and cellular pathways. Plant Cell 13: 2589-2607.
-
(2001)
Plant Cell
, vol.13
, pp. 2589-2607
-
-
Ma, L.1
Li, J.2
Qu, L.3
Hager, J.4
Chen, Z.5
-
56
-
-
0035979317
-
Multiple transcription-factor genes are early targets of phytochrome A signalling
-
Tepperman JM, Zhu T, Chang HS, Wang X, Quail PH, (2001) Multiple transcription-factor genes are early targets of phytochrome A signalling. Proc Natl Acad Sci USA 98: 9437-9442.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 9437-9442
-
-
Tepperman, J.M.1
Zhu, T.2
Chang, H.S.3
Wang, X.4
Quail, P.H.5
-
57
-
-
0142134233
-
Genomic and physiological studies of EARLY CRYPTOCHROME 1 action demonstrate roles for auxin and gibberellin in the control of hypocotyl growth by blue light
-
Folta KM, Pontin MA, Karlin-Neumann G, Bottini R, Spalding EP, (2003) Genomic and physiological studies of EARLY CRYPTOCHROME 1 action demonstrate roles for auxin and gibberellin in the control of hypocotyl growth by blue light. Plant Journal 36: 203-214.
-
(2003)
Plant Journal
, vol.36
, pp. 203-214
-
-
Folta, K.M.1
Pontin, M.A.2
Karlin-Neumann, G.3
Bottini, R.4
Spalding, E.P.5
-
58
-
-
33644825186
-
Conservation and divergence of light-regulated genome expression patterns during seedling development in rice and Arabidopsis
-
Jiao Y, Ma L, Strickland E, Deng XW, (2005) Conservation and divergence of light-regulated genome expression patterns during seedling development in rice and Arabidopsis. Plant Cell 17: 3239-3256.
-
(2005)
Plant Cell
, vol.17
, pp. 3239-3256
-
-
Jiao, Y.1
Ma, L.2
Strickland, E.3
Deng, X.W.4
-
59
-
-
55849090312
-
HFR1 is crucial for transcriptome regulation in the cryptochrome 1-mediated early response to blue light in Arabidopsis thaliana
-
doi 10.1371/journal.pone.0003563
-
Zhang XN, Wu Y, Tobias JW, Brunk BP, Deitzer GF, et al. (2008) HFR1 is crucial for transcriptome regulation in the cryptochrome 1-mediated early response to blue light in Arabidopsis thaliana. PLoS ONE 3(10): e3563. doi 10.1371/journal.pone.0003563.
-
(2008)
PLoS ONE
, vol.3
, Issue.10
-
-
Zhang, X.N.1
Wu, Y.2
Tobias, J.W.3
Brunk, B.P.4
Deitzer, G.F.5
-
60
-
-
79751496539
-
Transitions of gene expression induced by short-term blue light
-
Lehmann P, Nöthen J, Schmidt von Braun S, Bohnsack MT, et al. (2011) Transitions of gene expression induced by short-term blue light. Plant Biology 13: 349-361.
-
(2011)
Plant Biology
, vol.13
, pp. 349-361
-
-
Lehmann, P.1
Nöthen, J.2
Schmidt von Braun, S.3
Bohnsack, M.T.4
-
61
-
-
50849131664
-
Identification and functional analysis of light-responsive unique genes and gene family members in rice
-
doi 10.1371/journal.pgen.1000164
-
Jung K-H, Lee J, Dardick C, Seo Y-S, Cao P, et al. (2008) Identification and functional analysis of light-responsive unique genes and gene family members in rice. PLoS Genet 4(8): e1000164. doi 10.1371/journal.pgen.1000164.
-
(2008)
PLoS Genet
, vol.4
, Issue.8
-
-
Jung, K.-H.1
Lee, J.2
Dardick, C.3
Seo, Y.-S.4
Cao, P.5
-
62
-
-
77957957377
-
Genomewide characterization of the light-responsive and clock-controlled output pathways in Lotus japonicas with special emphasis of its uniqueness
-
Ono N, Ishida K, Yamashino T, Nakanishi H, Satoet S, et al. (2010) Genomewide characterization of the light-responsive and clock-controlled output pathways in Lotus japonicas with special emphasis of its uniqueness. Plant Cell Physiology 51: 1800-1814.
-
(2010)
Plant Cell Physiology
, vol.51
, pp. 1800-1814
-
-
Ono, N.1
Ishida, K.2
Yamashino, T.3
Nakanishi, H.4
Satoet, S.5
-
63
-
-
62949239180
-
Improved RNA Isolation for Laminaria japonica Aresch (Laminariaceae, Phaeophyta)
-
Yao JT, Fu WD, Wang XL, Duan DL, (2008) Improved RNA Isolation for Laminaria japonica Aresch (Laminariaceae, Phaeophyta). Journal of Applied Phycology 21: 233-238.
-
(2008)
Journal of Applied Phycology
, vol.21
, pp. 233-238
-
-
Yao, J.T.1
Fu, W.D.2
Wang, X.L.3
Duan, D.L.4
-
64
-
-
75649124547
-
De novo assembly of human genomes with massively parallel short read sequencing
-
Li R, Ruan J, Qian W, Fang X, Shi Z, et al. (2009) De novo assembly of human genomes with massively parallel short read sequencing. Genome Research 20: 265-272.
-
(2009)
Genome Research
, vol.20
, pp. 265-272
-
-
Li, R.1
Ruan, J.2
Qian, W.3
Fang, X.4
Shi, Z.5
-
65
-
-
0037460985
-
TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets
-
Pertea G, Huang X, Liang F, Antonescu V, Sultana R, et al. (2003) TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets. Bioinformatics 19: 651-652.
-
(2003)
Bioinformatics
, vol.19
, pp. 651-652
-
-
Pertea, G.1
Huang, X.2
Liang, F.3
Antonescu, V.4
Sultana, R.5
-
66
-
-
0033290515
-
ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences
-
CA: AAAI Press
-
Iseli C, Jongeneel CV, Bucher P, (1999) ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences. In Proceeding of the Intelligent System for Molecular Biology. CA: AAAI Press pp. 138-148.
-
(1999)
In Proceeding of the Intelligent System for Molecular Biology
, pp. 138-148
-
-
Iseli, C.1
Jongeneel, C.V.2
Bucher, P.3
-
67
-
-
24644503098
-
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
-
Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, et al. (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21: 3674-3676.
-
(2005)
Bioinformatics
, vol.21
, pp. 3674-3676
-
-
Conesa, A.1
Gotz, S.2
Garcia-Gomez, J.M.3
Terol, J.4
Talon, M.5
-
68
-
-
33747846582
-
WEGO: a web tool for plotting GO annotations
-
Ye J, Fang L, Zheng H, Zhang Y, Chen J, et al. (2006) WEGO: a web tool for plotting GO annotations. Nucleic Acids Research 34: W293-297.
-
(2006)
Nucleic Acids Research
, vol.34
-
-
Ye, J.1
Fang, L.2
Zheng, H.3
Zhang, Y.4
Chen, J.5
-
69
-
-
0035829361
-
Controlling the false discovery rate in behavior genetics research
-
Benjamini Y, Drai D, Elmer G, Kafkafi N, Golani I, (2001) Controlling the false discovery rate in behavior genetics research. Behavioural Brain Research 125: 279-284.
-
(2001)
Behavioural Brain Research
, vol.125
, pp. 279-284
-
-
Benjamini, Y.1
Drai, D.2
Elmer, G.3
Kafkafi, N.4
Golani, I.5
-
70
-
-
0032849859
-
CAP3: A DNA sequence assembly program
-
Huang X, Madan A, (1999) CAP3: A DNA sequence assembly program. Genome Research 9: 868-877.
-
(1999)
Genome Research
, vol.9
, pp. 868-877
-
-
Huang, X.1
Madan, A.2
-
71
-
-
0034069495
-
Gene Ontology: tool for the unification of biology. The Gene Ontology Consortium
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al. (2000) Gene Ontology: tool for the unification of biology. The Gene Ontology Consortium. Nature Genetics 25: 25-29.
-
(2000)
Nature Genetics
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
-
72
-
-
0033956060
-
The COG database: a tool for genome-scale analysis of protein functions and evolution
-
Tatusov RL, Galperin MY, Natale DA, Koonin EV, (2008) The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Research 28: 33-36.
-
(2008)
Nucleic Acids Research
, vol.28
, pp. 33-36
-
-
Tatusov, R.L.1
Galperin, M.Y.2
Natale, D.A.3
Koonin, E.V.4
-
73
-
-
0033982936
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
Kanehisa M, Goto S, (2000) KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Research 28: 27-30.
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
74
-
-
0004291744
-
-
New York: The Heidelberg Science Library
-
Bunning E, (1967) The Physiological Clock. New York: The Heidelberg Science Library.
-
(1967)
The Physiological Clock
-
-
Bunning, E.1
-
75
-
-
0027349267
-
Temporal organization: reflections of a Darwinian clock-watcher
-
Pittendrigh CS, (1993) Temporal organization: reflections of a Darwinian clock-watcher. Annual Review of Physiology 55: 16-54.
-
(1993)
Annual Review of Physiology
, vol.55
, pp. 16-54
-
-
Pittendrigh, C.S.1
-
76
-
-
0034724518
-
ZEITLUPE encodes a novel clock-associated PAS protein from Arabidopsis
-
Somers DE, Schultz TF, Milnamow M, Kay SA, (2000) ZEITLUPE encodes a novel clock-associated PAS protein from Arabidopsis. Cell 101: 319-329.
-
(2000)
Cell
, vol.101
, pp. 319-329
-
-
Somers, D.E.1
Schultz, T.F.2
Milnamow, M.3
Kay, S.A.4
-
77
-
-
0348134861
-
Targeted degradation of TOC1 by ZTL modulates circadian function in Arabidopsis thaliana
-
Más P, Kim WY, Somers DE, Kay SA, (2003) Targeted degradation of TOC1 by ZTL modulates circadian function in Arabidopsis thaliana. Nature 426: 567-570.
-
(2003)
Nature
, vol.426
, pp. 567-570
-
-
Más, P.1
Kim, W.Y.2
Somers, D.E.3
Kay, S.A.4
-
78
-
-
6444243196
-
Formation of an SCFZTL complex is required for proper regulation of circadian timing
-
Han L, Mason M, Risseeuw EP, Crosby WL, Somers DE, (2004) Formation of an SCFZTL complex is required for proper regulation of circadian timing. The Plant Journal 40: 291-301.
-
(2004)
The Plant Journal
, vol.40
, pp. 291-301
-
-
Han, L.1
Mason, M.2
Risseeuw, E.P.3
Crosby, W.L.4
Somers, D.E.5
-
79
-
-
0032167765
-
Protein kinase CK2 interacts with and phosphorylates the Arabidopsis circadian clock-associated 1 protein
-
Sugano S, Andronis C, Green RM, Wang ZY, Tobin EM, (1998) Protein kinase CK2 interacts with and phosphorylates the Arabidopsis circadian clock-associated 1 protein. Proc Natl Acad Sci USA 95: 11020-11025.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 11020-11025
-
-
Sugano, S.1
Andronis, C.2
Green, R.M.3
Wang, Z.Y.4
Tobin, E.M.5
-
80
-
-
0033607215
-
The protein kinase CK2 is involved in regulation of circadian rhythms in Arabidopsis
-
Sugano S, Andronis C, Ong MS, Green RM, Tobin EM, (1999) The protein kinase CK2 is involved in regulation of circadian rhythms in Arabidopsis. Proc Natl Acad Sci USA 96: 12362-12366.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 12362-12366
-
-
Sugano, S.1
Andronis, C.2
Ong, M.S.3
Green, R.M.4
Tobin, E.M.5
-
81
-
-
0035800467
-
Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock
-
Alabadí D, Oyama T, Yanovsky MJ, Harmon FG, Más P, et al. (2001) Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock. Science 293: 880-883.
-
(2001)
Science
, vol.293
, pp. 880-883
-
-
Alabadí, D.1
Oyama, T.2
Yanovsky, M.J.3
Harmon, F.G.4
Más, P.5
-
82
-
-
33644813858
-
Positive and negative factors confer phase-specific circadian regulation of transcription in Arabidopsis
-
Harmer SL, Kay SA, (2005) Positive and negative factors confer phase-specific circadian regulation of transcription in Arabidopsis. Plant Cell 17: 1926-1940.
-
(2005)
Plant Cell
, vol.17
, pp. 1926-1940
-
-
Harmer, S.L.1
Kay, S.A.2
-
83
-
-
20444397414
-
Pseudo-response regulators (PRRs) or true oscillator components (TOCs)
-
Mizuno T, Nakamichi N, (2005) Pseudo-response regulators (PRRs) or true oscillator components (TOCs). Plant Cell Physioloy 46: 677-685.
-
(2005)
Plant Cell Physioloy
, vol.46
, pp. 677-685
-
-
Mizuno, T.1
Nakamichi, N.2
-
84
-
-
0034936950
-
UV and blue light signalling: pathways regulating chalcone synthase gene expression in Arabidopsis
-
Jenkins GI, Long JC, Wade HK, Shenton MR, Bibikova TN, (2001) UV and blue light signalling: pathways regulating chalcone synthase gene expression in Arabidopsis. New Phytologist 151: 121-131.
-
(2001)
New Phytologist
, vol.151
, pp. 121-131
-
-
Jenkins, G.I.1
Long, J.C.2
Wade, H.K.3
Shenton, M.R.4
Bibikova, T.N.5
-
85
-
-
0030330738
-
UV-B, UV-A and blue light signal transduction pathways interact synergistically to regulate chalcone synthase gene expression in Arabidopsis
-
Fuglevand G, Jackson JA, Jenkins GI, (1996) UV-B, UV-A and blue light signal transduction pathways interact synergistically to regulate chalcone synthase gene expression in Arabidopsis. Plant Cell 8: 2347-2357.
-
(1996)
Plant Cell
, vol.8
, pp. 2347-2357
-
-
Fuglevand, G.1
Jackson, J.A.2
Jenkins, G.I.3
-
86
-
-
0033617475
-
Cryptochromes: blue light receptors for plants and animals
-
Cashmore AR, Jarillo JA, Wu YJ, Liu DM, (1999) Cryptochromes: blue light receptors for plants and animals. Science 284: 760-765.
-
(1999)
Science
, vol.284
, pp. 760-765
-
-
Cashmore, A.R.1
Jarillo, J.A.2
Wu, Y.J.3
Liu, D.M.4
-
87
-
-
0141480569
-
Cryptochrome structure and signal transduction
-
Lin C, Shalitin D, (2003) Cryptochrome structure and signal transduction. Annual Review of Plant Biology 54: 469-496.
-
(2003)
Annual Review of Plant Biology
, vol.54
, pp. 469-496
-
-
Lin, C.1
Shalitin, D.2
-
88
-
-
33746552170
-
CUL4 associates with DDB1 and DET1 and its downregulation affects diverse aspects of development in Arabidopsis thaliana
-
Bernhardt A, Lechner E, Hano P, Schade V, Dieterle M, et al. (2006) CUL4 associates with DDB1 and DET1 and its downregulation affects diverse aspects of development in Arabidopsis thaliana. Plant Journal 47: 591-603.
-
(2006)
Plant Journal
, vol.47
, pp. 591-603
-
-
Bernhardt, A.1
Lechner, E.2
Hano, P.3
Schade, V.4
Dieterle, M.5
-
89
-
-
5444274523
-
Targeted ubiquitination of CDT1 by the DDB1-CUL4A-ROC1 ligase in response to DNA damage
-
Hu J, McCall CM, Ohta T, Xiong Y, (2004) Targeted ubiquitination of CDT1 by the DDB1-CUL4A-ROC1 ligase in response to DNA damage. Nature Cell Biology 6: 1003-1009.
-
(2004)
Nature Cell Biology
, vol.6
, pp. 1003-1009
-
-
Hu, J.1
McCall, C.M.2
Ohta, T.3
Xiong, Y.4
-
90
-
-
84862977131
-
Counteracting the retarding and inhibitory effects of strong ultraviolet on Fucus eggs by white light
-
Whitaker DM, (1942) Counteracting the retarding and inhibitory effects of strong ultraviolet on Fucus eggs by white light. Journal of General Physiology 25: 391-397.
-
(1942)
Journal of General Physiology
, vol.25
, pp. 391-397
-
-
Whitaker, D.M.1
-
91
-
-
0024808920
-
The effects of blue and red light on Acetabularia mediterranea after long exposure to darkness
-
Dazy AC, Puiseux-dao S, Borghi H, (1989) The effects of blue and red light on Acetabularia mediterranea after long exposure to darkness. Biology of the Cell 67(2): 227-234.
-
(1989)
Biology of the Cell
, vol.67
, Issue.2
, pp. 227-234
-
-
Dazy, A.C.1
Puiseux-dao, S.2
Borghi, H.3
-
92
-
-
0027073574
-
Blue light sensitivity of UV-irradiated young sporophytes of Laminaria hyperborean
-
Han T, Kain JM, (1992) Blue light sensitivity of UV-irradiated young sporophytes of Laminaria hyperborean. Journal of Experimental Marine Biology and Ecology 158(2): 219-230.
-
(1992)
Journal of Experimental Marine Biology and Ecology
, vol.158
, Issue.2
, pp. 219-230
-
-
Han, T.1
Kain, J.M.2
-
93
-
-
84989607671
-
Blue light photoreactivation in ultravioletirradiated young sporophytes of Alaria esculenta and Laminaria saccharina (Phaeophyta)
-
Han T, Kain JM, (1993) Blue light photoreactivation in ultravioletirradiated young sporophytes of Alaria esculenta and Laminaria saccharina (Phaeophyta). Journal of Phycology 29: 79-81.
-
(1993)
Journal of Phycology
, vol.29
, pp. 79-81
-
-
Han, T.1
Kain, J.M.2
-
94
-
-
0028339078
-
DET1, a negative regulator of light-mediated development and gene expression in Arabidopsis, encodes a novel nuclear-localized protein
-
Pepper A, Delaney T, Washburn T, Poole D, Chory J, (1994) DET1, a negative regulator of light-mediated development and gene expression in Arabidopsis, encodes a novel nuclear-localized protein. Cell 78: 109-116.
-
(1994)
Cell
, vol.78
, pp. 109-116
-
-
Pepper, A.1
Delaney, T.2
Washburn, T.3
Poole, D.4
Chory, J.5
-
95
-
-
0035478483
-
COP9 signalosome revisited: a novel mediator of protein degradation
-
Schwechheimer C, Deng XW, (2001) COP9 signalosome revisited: a novel mediator of protein degradation. TRENDS in Cell Biology 11: 420-426.
-
(2001)
TRENDS in Cell Biology
, vol.11
, pp. 420-426
-
-
Schwechheimer, C.1
Deng, X.W.2
-
96
-
-
13144305043
-
The COP9 complex is conserved between plants and mammals and is related to the 26 S proteasome regulatory complex
-
Wei N, Tsuge T, Serino G, Dohmae N, Takio K, et al. (1998) The COP9 complex is conserved between plants and mammals and is related to the 26 S proteasome regulatory complex. Current Biology 8: 919-922.
-
(1998)
Current Biology
, vol.8
, pp. 919-922
-
-
Wei, N.1
Tsuge, T.2
Serino, G.3
Dohmae, N.4
Takio, K.5
|