Characterization of lipid matrices for membrane protein crystallization by high-throughput small angle X-ray scattering

Methods

Volumn 55, Issue 4, 2011, Pages 342-349

  Joseph, Jeremiah S ^a   Liu, Wei ^a   Kunken, Joshua ^a   Weiss, Thomas M ^b   Tsuruta, Hiro ^b   Cherezov, Vadim ^a  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

^b SLAC NATIONAL ACCELERATOR LABORATORY   (United States)

Author keywords

Lipidic cubic phase; Monoolein; Phase behavior; SAXS

Indexed keywords

CHOLESTEROL; GLYCEROL OLEATE; LIPID; MEMBRANE PROTEIN; MONOVACCENIN; UNCLASSIFIED DRUG;

ARTICLE; BLEACHING; CRYSTALLIZATION; FLUORESCENCE ANALYSIS; LIPID ANALYSIS; PRIORITY JOURNAL; PROTEIN STRUCTURE; X RAY CRYSTALLOGRAPHY;

CHOLESTEROL; CITRIC ACID; CRYSTALLIZATION; FLUORESCENCE RECOVERY AFTER PHOTOBLEACHING; GLYCERIDES; MEMBRANE PROTEINS; MONOGLYCERIDES; POLYETHYLENE GLYCOLS; REPRODUCIBILITY OF RESULTS; SCATTERING, SMALL ANGLE; X-RAY DIFFRACTION;

EID: 84862908785     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2011.08.013     Document Type: Article

References (37)

1. Landau E.M., Rosenbusch J.P. Proc. Natl. Acad. Sci. USA 1996, 93:14532-14535.
2. Caffrey M. J. Struct. Biol. 2003, 142:108-132.
3. Landau E.M., Pebay-Peyroula E., Neutze R. FEBS Lett. 2003, 555:51-56.
4. Cherezov V., Yamashita E., Liu W., Zhalnina M., Cramer W.A., Caffrey M. J. Mol. Biol. 2006, 364:716-734.
5. Cherezov V., Liu W., Derrick J.P., Luan B., Aksimentiev A., Katritch V., Caffrey M. Proteins 2008, 71:24-34.
6. Hofer N., Aragao D., Caffrey M. Biophys. J. 2010, 99:L23-25.
7. Tiefenbrunn T., Liu W., Chen Y., Katritch V., Stout C.D., Fee J.A., Cherezov V. PloS One 2011, 6:e22348.
8. Cherezov V., Rosenbaum D.M., Hanson M.A., Rasmussen S.G., Thian F.S., Kobilka T.S., Choi H.J., Kuhn P., Weis W.I., Kobilka B.K., Stevens R.C. Science 2007, 318:1258-1265.
9. Hanson M.A., Cherezov V., Griffith M.T., Roth C.B., Jaakola V.P., Chien E.Y., Velasquez J., Kuhn P., Stevens R.C. Structure 2008, 16:897-905.
10. Jaakola V.P., Griffith M.T., Hanson M.A., Cherezov V., Chien E.Y., Lane J.R., Ijzerman A.P., Stevens R.C. Science 2008, 322:1211-1217.
11. Chien E.Y., Liu W., Zhao Q., Katritch V., Han G.W., Hanson M.A., Shi L., Newman A.H., Javitch J.A., Cherezov V., Stevens R.C. Science 2010, 330:1091-1095.
12. Wu B., Chien E.Y., Mol C.D., Fenalti G., Liu W., Katritch V., Abagyan R., Brooun A., Wells P., Bi F.C., Hamel D.J., Kuhn P., Handel T.M., Cherezov V., Stevens R.C. Science 2010, 330:1066-1071.
13. Shimamura T., Shiroishi M., Weyand S., Tsujimoto H., Winter G., Katritch V., Abagyan R., Cherezov V., Liu W., Han G.W., Kobayashi T., Stevens R.C., Iwata S. Nature 2011, 475:65-70.
14. Wohri A.B., Johansson L.C., Wadsten-Hindrichsen P., Wahlgren W.Y., Fischer G., Horsefield R., Katona G., Nyblom M., Oberg F., Young G., Cogdell R.J., Fraser N.J., Engstrom S., Neutze R. Structure 2008, 16:1003-1009.
15. Cherezov V., Clogston J., Papiz M.Z., Caffrey M. J. Mol. Biol. 2006, 357:1605-1618.
16. Kulkarni C.V., Wachter W., Iglesias-Salto G., Engelskirchen S., Ahualli S. Phys. Chem. Chem. Phys. 2011, 13:3004-3021.
17. Caffrey M., Lyons J., Smyth T., Hart D.J. Curr. Top. Membr. 2009, 63:83-108.
18. Cherezov V., Fersi H., Caffrey M. Biophys. J. 2001, 81:225-242.
19. Cherezov V., Clogston J., Misquitta Y., Abdel-Gawad W., Caffrey M. Biophys. J. 2002, 83:3393-3407.
20. Qiu H., Caffrey M. Biomaterials 2000, 21:223-234.
21. Cherezov V., Liu J., Griffith M., Hanson M.A., Stevens R.C. Cryst. Growth Des. 2008, 8:4307-4315.
22. Misquitta L.V., Misquitta Y., Cherezov V., Slattery O., Mohan J.M., Hart D., Zhalnina M., Cramer W.A., Caffrey M. Structure 2004, 12:2113-2124.
23. Misquitta Y., Cherezov V., Havas F., Patterson S., Mohan J.M., Wells A.J., Hart D.J., Caffrey M. J. Struct. Biol. 2004, 148:169-175.
24. Borshchevskiy V., Moiseeva E., Kuklin A., Bueldt G., Hato M., Gordeliy V. J. Cryst. Growth 2010, 312:3326-3330.
25. Li D.F., Lee J., Caffrey M. Cryst. Growth Des. 2011, 11:530-537.
26. Cherezov V., Peddi A., Muthusubramaniam L., Zheng Y.F., Caffrey M. Acta Crystallogr. D Biol. Crystallogr. 2004, 60:1795-1807.
27. Cherezov V., Caffrey M. J. Appl. Cryst. 2003, 36:1372-1377.
28. Xu F., Liu W., Hanson M.A., Stevens R.C., Cherezov V. Cryst. Growth Des. 2011, 11:1193-1201.
29. Caffrey M., Cherezov V. Nat. Protoc. 2009, 4:706-731.
30. Cheng A., Hummel B., Qiu H., Caffrey M. Chem. Phys. Lipids 1998, 95:11-21.
31. W.S. Rasband, ImageJ, (1997-2011), US National Institutes of Health, Bethesda, Maryland, USA.
32. Smolsky I.L., Liu P., Niebuhr M., Ito K., Weiss T.M., Tsuruta H. J. Appl. Cryst. 2007, 40:S453-S458.
33. McPhillips T.M., McPhillips S.E., Chiu H.J., Cohen A.E., Deacon A.M., Ellis P.J., Garman E., Gonzalez A., Sauter N.K., Phizackerley R.P., Soltis S.M., Kuhn P. J. Sync. Rad. 2002, 9:401-406.
34. SSRL. http://ssrl.slac.stanford.edu/~saxs/analysis/sastool.htm.
35. Wojdyr M. J. Appl. Cryst. 2010, 43:1126-1128.
36. Gordeliy V.I., Labahn J., Moukhametzianov R., Efremov R., Granzin J., Schlesinger R., Buldt G., Savopol T., Scheidig A.J., Klare J.P., Engelhard M. Nature 2002, 419:484-487.
37. Jancarik J., Kim S.H. J. Appl. Cryst. 1991, 24:409-411.