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Volumn 718, Issue , 2011, Pages 227-244

Post-transcriptional modification of RNAs by artificial box H/ACA and Box C/D RNPs

Author keywords

2 O methylation; Box C D RNA; Box H ACA RNA; mRNA; Pseudouridylation; rRNA; snoRNA; snRNA; Telomerase RNA

Indexed keywords

BOX C D RIBONUCLEOPROTEIN; GUIDE RNA; H ACA RIBONUCLEOPROTEIN; RIBONUCLEOPROTEIN; RIBOSOME RNA; SMALL NUCLEOLAR RNA; TAQ POLYMERASE; UNCLASSIFIED DRUG; FUNGAL RNA; MESSENGER RNA; PRIMER DNA; SMALL NUCLEAR RNA;

EID: 84862833173     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-018-8_14     Document Type: Chapter
Times cited : (15)

References (47)
  • 1
    • 33847187076 scopus 로고    scopus 로고
    • Non-coding RNAs: Lessons from the small nuclear and small nucleolar RNAs
    • Matera, A. G., Terns, R. M., and Terns, M. P. (2007) Non-coding RNAs: lessons from the small nuclear and small nucleolar RNAs. Nat. Rev. Mol. Cell. Biol. 8, 209-20.
    • (2007) Nat. Rev. Mol. Cell. Biol. , vol.8 , pp. 209-220
    • Matera, A.G.1    Terns, R.M.2    Terns, M.P.3
  • 2
    • 0037013831 scopus 로고    scopus 로고
    • Cajal body-specific small nuclear RNAs: A novel class of 2¢-O-methylation and pseudouridylation guide RNAs
    • Darzacq, X., Jady, B. E., Verheggen, C., Kiss, A. M., Bertrand, E., and Kiss, T. (2002) Cajal body-specific small nuclear RNAs: a novel class of 2¢-O-methylation and pseudouridylation guide RNAs. EMBO J 21, 2746-56.
    • (2002) EMBO J , vol.21 , pp. 2746-2756
    • Darzacq, X.1    Jady, B.E.2    Verheggen, C.3    Kiss, A.M.4    Bertrand, E.5    Kiss, T.6
  • 5
    • 0035355205 scopus 로고    scopus 로고
    • RNomics: An experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse
    • Huttenhofer, A., Kiefmann, M., Meier-Ewert, S., O’Brien, J., Lehrach, H., Bachellerie, J. P., et al. (2001) RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J 20, 2943-53.
    • (2001) EMBO J , vol.20 , pp. 2943-2953
    • Huttenhofer, A.1    Kiefmann, M.2    Meier-Ewert, S.3    O’Brien, J.4    Lehrach, H.5    Bachellerie, J.P.6
  • 6
    • 29844435528 scopus 로고    scopus 로고
    • A computational screen for mammalian pseudouridylation guide H/ACA RNAs
    • Schattner, P., Barberan-Soler, S., and Lowe, T. M. (2006) A computational screen for mammalian pseudouridylation guide H/ACA RNAs. RNA 12, 15-25.
    • (2006) RNA , vol.12 , pp. 15-25
    • Schattner, P.1    Barberan-Soler, S.2    Lowe, T.M.3
  • 7
    • 4043120552 scopus 로고    scopus 로고
    • Genome-wide searching for pseudouridylation guide snoRNAs: Analysis of the Saccharomyces cerevisiae genome
    • Schattner, P., Decatur, W. A., Davis, C. A., Ares, M., Jr., Fournier, M. J., and Lowe, T. M. (2004) Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome. Nucleic Acids Res. 32, 4281-96.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 4281-4296
    • Schattner, P.1    Decatur, W.A.2    Davis, C.A.3    Ares, M.4    Fournier, M.J.5    Lowe, T.M.6
  • 9
    • 31144451735 scopus 로고    scopus 로고
    • A novel experimental approach for systematic identification of box H/ACA snoRNAs from eukaryotes.
    • Gu, A. D., Zhou, H., Yu, C. H., and Qu, L. H. (2005) A novel experimental approach for systematic identification of box H/ACA snoRNAs from eukaryotes. Nucleic Acids Res.33, e194.
    • (2005) Nucleic Acids Res. , vol.33 , pp. e194
    • Gu, A.D.1    Zhou, H.2    Yu, C.H.3    Qu, L.H.4
  • 10
    • 2942718696 scopus 로고    scopus 로고
    • Human box H/ACA pseudouridylation guide RNA machinery
    • Kiss, A. M., Jady, B. E., Bertrand, E., and Kiss, T. (2004) Human box H/ACA pseudouridylation guide RNA machinery. Mol. Cell. Biol. 24, 5797-807.
    • (2004) Mol. Cell. Biol. , vol.24 , pp. 5797-5807
    • Kiss, A.M.1    Jady, B.E.2    Bertrand, E.3    Kiss, T.4
  • 11
    • 0034640402 scopus 로고    scopus 로고
    • Fibrillarinassociated box C/D small nucleolar RNAs in Trypanosoma brucei. Sequence conservation and implications for 2¢-O-ribose methylation of rRNA
    • Dunbar, D. A., Wormsley, S., Lowe, T. M., and Baserga, S. J. (2000) Fibrillarinassociated box C/D small nucleolar RNAs in Trypanosoma brucei. Sequence conservation and implications for 2¢-O-ribose methylation of rRNA. J Biol. Chem. 275, 14767-76.
    • (2000) J Biol. Chem. , vol.275 , pp. 14767-14776
    • Dunbar, D.A.1    Wormsley, S.2    Lowe, T.M.3    Baserga, S.J.4
  • 12
    • 0034615782 scopus 로고    scopus 로고
    • Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: Lessons from the Pyrococcus genomes
    • Gaspin, C., Cavaille, J., Erauso, G., and Bachellerie, J. P. (2000) Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes. J Mol. Biol. 297, 895-906.
    • (2000) J Mol. Biol. , vol.297 , pp. 895-906
    • Gaspin, C.1    Cavaille, J.2    Erauso, G.3    Bachellerie, J.P.4
  • 14
    • 0035312246 scopus 로고    scopus 로고
    • Identification of 10 novel snoRNA gene clusters from Arabidopsis thaliana
    • Qu, L. H., Meng, Q., Zhou, H., and Chen, Y. Q. (2001) Identification of 10 novel snoRNA gene clusters from Arabidopsis thaliana. Nucleic Acids Res. 29, 1623-30.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 1623-1630
    • Qu, L.H.1    Meng, Q.2    Zhou, H.3    Chen, Y.Q.4
  • 15
    • 0036898607 scopus 로고    scopus 로고
    • Experimental RNomics: Identification of 140 candidates for small non-messenger RNAs in the plant Arabidopsis thaliana
    • Marker, C., Zemann, A., Terhorst, T., Kiefmann, M., Kastenmayer, J. P., Green, P., et al. (2002) Experimental RNomics: identification of 140 candidates for small non-messenger RNAs in the plant Arabidopsis thaliana. Curr. Biol. 12, 2002-13.
    • (2002) Curr. Biol. , vol.12 , pp. 2002-2013
    • Marker, C.1    Zemann, A.2    Terhorst, T.3    Kiefmann, M.4    Kastenmayer, J.P.5    Green, P.6
  • 17
    • 0038719826 scopus 로고    scopus 로고
    • RNomics in Drosophila melanogaster: Identification of 66 candidates for novel non-messenger RNAs
    • Yuan, G., Klambt, C., Bachellerie, J. P., Brosius, J., and Huttenhofer, A. (2003) RNomics in Drosophila melanogaster: identification of 66 candidates for novel non-messenger RNAs. Nucleic Acids Res. 31, 2495-507.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 2495-2507
    • Yuan, G.1    Klambt, C.2    Bachellerie, J.P.3    Brosius, J.4    Huttenhofer, A.5
  • 18
    • 0030572699 scopus 로고    scopus 로고
    • The RNA world of the nucleolus: Two major families of small RNAs defined by different box elements with related functions
    • Balakin, A. G., Smith, L., and Fournier, M. J. (1996) The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. Cell 86, 823-34.
    • (1996) Cell , vol.86 , pp. 823-834
    • Balakin, A.G.1    Smith, L.2    Fournier, M.J.3
  • 19
    • 0034126359 scopus 로고    scopus 로고
    • Synthesis and assembly of the box C+D small nucleolar RNPs
    • Lafontaine, D. L., and Tollervey, D. (2000) Synthesis and assembly of the box C+D small nucleolar RNPs. Mol. Cell. Biol. 20, 2650-9.
    • (2000) Mol. Cell. Biol. , vol.20 , pp. 2650-2659
    • Lafontaine, D.L.1    Tollervey, D.2
  • 20
    • 0030698635 scopus 로고    scopus 로고
    • Nucleolar KKE/D repeat proteins Nop56p and Nop58p interact with Nop1p and are required for ribosome biogenesis
    • Gautier, T., Berges, T., Tollervey, D., and Hurt, E. (1997) Nucleolar KKE/D repeat proteins Nop56p and Nop58p interact with Nop1p and are required for ribosome biogenesis. Mol. Cell. Biol. 17, 7088-98.
    • (1997) Mol. Cell. Biol. , vol.17 , pp. 7088-7098
    • Gautier, T.1    Berges, T.2    Tollervey, D.3    Hurt, E.4
  • 21
    • 0037117533 scopus 로고    scopus 로고
    • In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex
    • Omer, A. D., Ziesche, S., Ebhardt, H., and Dennis, P. P. (2002) In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex. Proc. Natl. Acad. Sci. USA 99, 5289-94.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 5289-5294
    • Omer, A.D.1    Ziesche, S.2    Ebhardt, H.3    Dennis, P.P.4
  • 22
    • 0022196373 scopus 로고
    • Fibrillarin: A new protein of the nucleolus identified by autoimmune sera
    • Ochs, R. L., Lischwe, M. A., Spohn, W. H., and Busch, H. (1985) Fibrillarin: a new protein of the nucleolus identified by autoimmune sera. Biol. Cell 54, 123-33.
    • (1985) Biol. Cell , vol.54 , pp. 123-133
    • Ochs, R.L.1    Lischwe, M.A.2    Spohn, W.H.3    Busch, H.4
  • 23
    • 0036786431 scopus 로고    scopus 로고
    • Purified box C/D snoRNPs are able to reproduce sitespecific 2¢-O-methylation of target RNA in vitro
    • Galardi, S., Fatica, A., Bachi, A., Scaloni, A., Presutti, C., and Bozzoni, I. (2002) Purified box C/D snoRNPs are able to reproduce sitespecific 2¢-O-methylation of target RNA in vitro. Mol. Cell. Biol. 22, 6663-8.
    • (2002) Mol. Cell. Biol. , vol.22 , pp. 6663-6668
    • Galardi, S.1    Fatica, A.2    Bachi, A.3    Scaloni, A.4    Presutti, C.5    Bozzoni, I.6
  • 24
    • 0034721649 scopus 로고    scopus 로고
    • A common core RNP structure shared between the small nucleoar box C/D RNPs and the spliceosomal U4 snRNP
    • Watkins, N. J., Segault, V., Charpentier, B., Nottrott, S., Fabrizio, P., Bachi, A., et al. (2000) A common core RNP structure shared between the small nucleoar box C/D RNPs and the spliceosomal U4 snRNP. Cell 103, 457-66.
    • (2000) Cell , vol.103 , pp. 457-466
    • Watkins, N.J.1    Segault, V.2    Charpentier, B.3    Nottrott, S.4    Fabrizio, P.5    Bachi, A.6
  • 25
    • 0037082424 scopus 로고    scopus 로고
    • Archaeal ribosomal protein L7 is a functional homolog of the eukaryotic 15.5kD/Snu13p snoRNP core protein
    • Kuhn, J. F., Tran, E. J., and Maxwell, E. S. (2002) Archaeal ribosomal protein L7 is a functional homolog of the eukaryotic 15.5kD/Snu13p snoRNP core protein. Nucleic Acids Res. 30, 931-41.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 931-941
    • Kuhn, J.F.1    Tran, E.J.2    Maxwell, E.S.3
  • 26
    • 0033053360 scopus 로고    scopus 로고
    • Nop58p is a common component of the box C+D snoRNPs that is required for snoRNA stability
    • Lafontaine, D. L., and Tollervey, D. (1999) Nop58p is a common component of the box C+D snoRNPs that is required for snoRNA stability. RNA 5, 455-67.
    • (1999) RNA , vol.5 , pp. 455-467
    • Lafontaine, D.L.1    Tollervey, D.2
  • 28
    • 0031788801 scopus 로고    scopus 로고
    • Cbf5p, a potential pseudouridine synthase, and Nhp2p, a putative RNA-binding protein, are present together with Gar1p in all H BOX/ACA-motif snoRNPs and constitute a common bipartite structure
    • Watkins, N. J., Gottschalk, A., Neubauer, G., Kastner, B., Fabrizio, P., Mann, M., et al. (1998) Cbf5p, a potential pseudouridine synthase, and Nhp2p, a putative RNA-binding protein, are present together with Gar1p in all H BOX/ACA-motif snoRNPs and constitute a common bipartite structure. RNA 4, 1549-68.
    • (1998) RNA , vol.4 , pp. 1549-1568
    • Watkins, N.J.1    Gottschalk, A.2    Neubauer, G.3    Kastner, B.4    Fabrizio, P.5    Mann, M.6
  • 29
    • 0343183144 scopus 로고    scopus 로고
    • In vitro assembly of human H/ACA small nucleolar RNPs reveals unique features of U17 and telomerase RNAs
    • Dragon, F., Pogacic, V., and Filipowicz, W. (2000) In vitro assembly of human H/ACA small nucleolar RNPs reveals unique features of U17 and telomerase RNAs. Mol. Cell. Biol.20, 3037-48.
    • (2000) Mol. Cell. Biol. , vol.20 , pp. 3037-3048
    • Dragon, F.1    Pogacic, V.2    Filipowicz, W.3
  • 30
    • 0034459569 scopus 로고    scopus 로고
    • Human H/ACA small nucleolar RNPs and telomerase share evolutionarily conserved proteins NHP2 and NOP10
    • Pogacic, V., Dragon, F., and Filipowicz, W. (2000) Human H/ACA small nucleolar RNPs and telomerase share evolutionarily conserved proteins NHP2 and NOP10. Mol. Cell. Biol. 20, 9028-40.
    • (2000) Mol. Cell. Biol. , vol.20 , pp. 9028-9040
    • Pogacic, V.1    Dragon, F.2    Filipowicz, W.3
  • 31
    • 0034659940 scopus 로고    scopus 로고
    • Evolutionary appearance of genes encoding proteins associated with box H/ACA snoRNAs: Cbf5p in Euglena gracilis, an early diverging eukaryote, and candidate Gar1p and Nop10p homologs in archaebacteria
    • Watanabe, Y., and Gray, M. W. (2000) Evolutionary appearance of genes encoding proteins associated with box H/ACA snoRNAs: cbf5p in Euglena gracilis, an early diverging eukaryote, and candidate Gar1p and Nop10p homologs in archaebacteria. Nucleic Acids Res. 28, 2342-52.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 2342-2352
    • Watanabe, Y.1    Gray, M.W.2
  • 32
    • 0037324527 scopus 로고    scopus 로고
    • Binding of L7Ae protein to the K-turn of archaeal snoRNAs: A shared RNA binding motif for C/D and H/ ACA box snoRNAs in Archaea
    • Rozhdestvensky, T. S., Tang, T. H., Tchirkova, I. V., Brosius, J., Bachellerie, J. P., and Huttenhofer, A. (2003) Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ ACA box snoRNAs in Archaea. Nucleic Acids Res. 31, 869-77.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 869-877
    • Rozhdestvensky, T.S.1    Tang, T.H.2    Tchirkova, I.V.3    Brosius, J.4    Bachellerie, J.P.5    Huttenhofer, A.6
  • 33
    • 2442542173 scopus 로고    scopus 로고
    • Architecture and assembly of mammalian H/ ACA small nucleolar and telomerase ribonucleoproteins
    • Wang, C., and Meier, U. T. (2004) Architecture and assembly of mammalian H/ ACA small nucleolar and telomerase ribonucleoproteins. EMBO J 23, 1857-67.
    • (2004) EMBO J , vol.23 , pp. 1857-1867
    • Wang, C.1    Meier, U.T.2
  • 34
    • 0030604698 scopus 로고    scopus 로고
    • Site-specific ribose methylation of preribosomal RNA: A novel function for small nucleolar RNAs
    • Kiss-Laszlo, Z., Henry, Y., Bachellerie, J. P., Caizergues-Ferrer, M., and Kiss, T. (1996) Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. Cell 85, 1077-88.
    • (1996) Cell , vol.85 , pp. 1077-1088
    • Kiss-Laszlo, Z.1    Henry, Y.2    Bachellerie, J.P.3    Caizergues-Ferrer, M.4    Kiss, T.5
  • 35
    • 0030711050 scopus 로고    scopus 로고
    • Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs
    • Ganot, P., Bortolin, M. L., and Kiss, T. (1997) Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs. Cell 89, 799-809.
    • (1997) Cell , vol.89 , pp. 799-809
    • Ganot, P.1    Bortolin, M.L.2    Kiss, T.3
  • 36
    • 0030771087 scopus 로고    scopus 로고
    • Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA
    • Ni, J., Tien, A. L., and Fournier, M. J. (1997) Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA. Cell 89, 565-73.
    • (1997) Cell , vol.89 , pp. 565-573
    • Ni, J.1    Tien, A.L.2    Fournier, M.J.3
  • 38
    • 0029808113 scopus 로고    scopus 로고
    • Targeted ribose methylation of RNA in vivo directed by tailored antisense RNA guides
    • Cavaille, J., Nicoloso, M., and Bachellerie, J. P. (1996) Targeted ribose methylation of RNA in vivo directed by tailored antisense RNA guides. Nature 383, 732-5.
    • (1996) Nature , vol.383 , pp. 732-735
    • Cavaille, J.1    Nicoloso, M.2    Bachellerie, J.P.3
  • 39
    • 0027536869 scopus 로고
    • Temperaturesensitive mutations demonstrate roles for yeast fibrillarin in pre-rRNA processing, pre-rRNA methylation, and ribosome assembly
    • Tollervey, D., Lehtonen, H., Jansen, R., Kern, H., and Hurt, E. C. (1993) Temperaturesensitive mutations demonstrate roles for yeast fibrillarin in pre-rRNA processing, pre-rRNA methylation, and ribosome assembly. Cell 72, 443-57.
    • (1993) Cell , vol.72 , pp. 443-457
    • Tollervey, D.1    Lehtonen, H.2    Jansen, R.3    Kern, H.4    Hurt, E.C.5
  • 40
    • 0032718276 scopus 로고    scopus 로고
    • Point mutations in yeast CBF5 can abolish in vivo pseudouridylation of rRNA
    • Zebarjadian, Y., King, T., Fournier, M. J., Clarke, L., and Carbon, J. (1999) Point mutations in yeast CBF5 can abolish in vivo pseudouridylation of rRNA. Mol. Cell. Biol.19, 7461-72.
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 7461-7472
    • Zebarjadian, Y.1    King, T.2    Fournier, M.J.3    Clarke, L.4    Carbon, J.5
  • 42
    • 0028239805 scopus 로고
    • Crystal structure of unmodified tRNA(Gln) complexed with glutaminyl-tRNA synthetase and ATP suggests a possible role for pseudo-uridines in stabilization of RNA structure
    • Arnez, J. G., and Steitz, T. A. (1994) Crystal structure of unmodified tRNA(Gln) complexed with glutaminyl-tRNA synthetase and ATP suggests a possible role for pseudo-uridines in stabilization of RNA structure. Biochemistry 33, 7560-7.
    • (1994) Biochemistry , vol.33 , pp. 7560-7567
    • Arnez, J.G.1    Steitz, T.A.2
  • 43
    • 0029566314 scopus 로고
    • Stabilization of RNA stacking by pseudouridine
    • Davis, D. R. (1995) Stabilization of RNA stacking by pseudouridine. Nucleic Acids Res.23, 5020-6.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 5020-5026
    • Davis, D.R.1
  • 44
    • 0030723027 scopus 로고    scopus 로고
    • Rules governing the orientation of the 2¢-hydroxyl group in RNA
    • Auffinger, P., and Westhof, E. (1997) Rules governing the orientation of the 2¢-hydroxyl group in RNA. J Mol. Biol. 274, 54-63.
    • (1997) J Mol. Biol. , vol.274 , pp. 54-63
    • Auffinger, P.1    Westhof, E.2
  • 46
    • 32644447756 scopus 로고    scopus 로고
    • Post-transcriptional nucleotide modification and alternative folding of RNA
    • Helm, M. (2006) Post-transcriptional nucleotide modification and alternative folding of RNA. Nucleic Acids Res. 34, 721-33.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 721-733
    • Helm, M.1
  • 47
    • 37749034810 scopus 로고    scopus 로고
    • Targeted premRNA modification for gene silencing and regulation
    • Zhao, X., and Yu, Y. T. (2008) Targeted premRNA modification for gene silencing and regulation. Nat. Methods 5, 95-100.
    • (2008) Nat. Methods , vol.5 , pp. 95-100
    • Zhao, X.1    Yu, Y.T.2


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