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Volumn 427, Issue 1, 2012, Pages 60-66

Identification of three H1N1 influenza virus groups with natural recombinant genes circulating from 1918 to 2009

Author keywords

Genetic mechanism; H1N1 influenza virus; Homologous recombination

Indexed keywords

ARTICLE; ASIA; CONTROLLED STUDY; EUROPE; GENE IDENTIFICATION; GENETIC RECOMBINATION; HOMOLOGOUS RECOMBINATION; INFLUENZA VIRUS A H1N1; NONHUMAN; NUCLEOTIDE SEQUENCE; PB1 GENE; PRIORITY JOURNAL; RECOMBINANT GENE; VIRUS GENE; VIRUS IDENTIFICATION; WESTERN HEMISPHERE;

EID: 84862803950     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2012.01.012     Document Type: Article
Times cited : (18)

References (39)
  • 1
    • 1642569137 scopus 로고    scopus 로고
    • Least and most powerful phylogenetic tests to elucidate the origin of the seed plants in the presence of conflicting signals under misspecified models
    • Aris-Brosou S. Least and most powerful phylogenetic tests to elucidate the origin of the seed plants in the presence of conflicting signals under misspecified models. Syst. Biol. 2003, 52(6):781-793.
    • (2003) Syst. Biol. , vol.52 , Issue.6 , pp. 781-793
    • Aris-Brosou, S.1
  • 3
    • 43249110221 scopus 로고    scopus 로고
    • Homologous recombination is very rare or absent in human influenza A virus
    • Boni M.F., Zhou Y., Taubenberger J.K., Holmes E.C. Homologous recombination is very rare or absent in human influenza A virus. J. Virol. 2008, 82(10):4807-4811.
    • (2008) J. Virol. , vol.82 , Issue.10 , pp. 4807-4811
    • Boni, M.F.1    Zhou, Y.2    Taubenberger, J.K.3    Holmes, E.C.4
  • 4
    • 77956283448 scopus 로고    scopus 로고
    • Guidelines for identifying homologous recombination events in influenza A virus
    • Boni M.F., de Jong M.D., van Doorn H.R., Holmes E.C. Guidelines for identifying homologous recombination events in influenza A virus. PLoS One 2010, 5(5):e10434.
    • (2010) PLoS One , vol.5 , Issue.5
    • Boni, M.F.1    de Jong, M.D.2    van Doorn, H.R.3    Holmes, E.C.4
  • 7
    • 66149093121 scopus 로고    scopus 로고
    • Different evolutionary trajectories of European avian-like and classical swine H1N1 influenza A viruses
    • Dunham E.J., Dugan V.G., Kaser E.K., Perkins S.E., Brown I.H., Holmes E.C., Taubenberger J.K. Different evolutionary trajectories of European avian-like and classical swine H1N1 influenza A viruses. J. Virol. 2009, 83(11):5485-5494.
    • (2009) J. Virol. , vol.83 , Issue.11 , pp. 5485-5494
    • Dunham, E.J.1    Dugan, V.G.2    Kaser, E.K.3    Perkins, S.E.4    Brown, I.H.5    Holmes, E.C.6    Taubenberger, J.K.7
  • 8
    • 0035822899 scopus 로고    scopus 로고
    • Recombination in the hemagglutinin gene of the 1918 "Spanish flu"
    • Gibbs M.J., Armstrong J.S., Gibbs A.J. Recombination in the hemagglutinin gene of the 1918 "Spanish flu". Science 2001, 293(5536):1842-1845.
    • (2001) Science , vol.293 , Issue.5536 , pp. 1842-1845
    • Gibbs, M.J.1    Armstrong, J.S.2    Gibbs, A.J.3
  • 9
    • 0033529904 scopus 로고    scopus 로고
    • Molecular characterization of H9N2 influenza viruses: were they the donors of the "internal" genes of H5N1 viruses in Hong Kong?
    • Guan Y., Shortridge K.F., Krauss S., Webster R.G. Molecular characterization of H9N2 influenza viruses: were they the donors of the "internal" genes of H5N1 viruses in Hong Kong?. Proc. Natl. Acad. Sci. U. S. A. 1999, 96(16):9363-9367.
    • (1999) Proc. Natl. Acad. Sci. U. S. A. , vol.96 , Issue.16 , pp. 9363-9367
    • Guan, Y.1    Shortridge, K.F.2    Krauss, S.3    Webster, R.G.4
  • 10
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S., Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 2003, 52(5):696-704.
    • (2003) Syst. Biol. , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 11
    • 79957650199 scopus 로고    scopus 로고
    • Evidence of intra-segmental homologous recombination in influenza A virus
    • Hao W. Evidence of intra-segmental homologous recombination in influenza A virus. Gene 2011, 481(2):57-64.
    • (2011) Gene , vol.481 , Issue.2 , pp. 57-64
    • Hao, W.1
  • 12
    • 52049113188 scopus 로고    scopus 로고
    • Homologous recombination evidence in human and swine influenza A viruses
    • He C.Q., Han G.Z., Wang D., Liu W., Li G.R., Liu X.P., Ding N.Z. Homologous recombination evidence in human and swine influenza A viruses. Virology 2008, 380(1):12-20.
    • (2008) Virology , vol.380 , Issue.1 , pp. 12-20
    • He, C.Q.1    Han, G.Z.2    Wang, D.3    Liu, W.4    Li, G.R.5    Liu, X.P.6    Ding, N.Z.7
  • 14
    • 77957934032 scopus 로고    scopus 로고
    • Intragenic recombination as a mechanism of genetic diversity in bluetongue virus
    • He C.Q., Ding N.Z., He M., Li S.N., Wang X.M., He H.B., Liu X.F., Guo H.S. Intragenic recombination as a mechanism of genetic diversity in bluetongue virus. J. Virol. 2010, 84(21):11487-11495.
    • (2010) J. Virol. , vol.84 , Issue.21 , pp. 11487-11495
    • He, C.Q.1    Ding, N.Z.2    He, M.3    Li, S.N.4    Wang, X.M.5    He, H.B.6    Liu, X.F.7    Guo, H.S.8
  • 15
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • Huson D.H., Bryant D. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 2006, 23(2):254-267.
    • (2006) Mol. Biol. Evol. , vol.23 , Issue.2 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 17
    • 33644908832 scopus 로고    scopus 로고
    • Identification of human H1N2 and human-swine reassortant H1N2 and H1N1 influenza A viruses among pigs in Ontario, Canada (2003 to 2005)
    • Karasin A.I., Carman S., Olsen C.W. Identification of human H1N2 and human-swine reassortant H1N2 and H1N1 influenza A viruses among pigs in Ontario, Canada (2003 to 2005). J. Clin. Microbiol. 2006, 44(3):1123-1126.
    • (2006) J. Clin. Microbiol. , vol.44 , Issue.3 , pp. 1123-1126
    • Karasin, A.I.1    Carman, S.2    Olsen, C.W.3
  • 20
    • 50149087104 scopus 로고    scopus 로고
    • Anomalies in the influenza virus genome database: new biology or laboratory errors?
    • Krasnitz M., Levine A.J., Rabadan R. Anomalies in the influenza virus genome database: new biology or laboratory errors?. J. Virol. 2008, 82(17):8947-8950.
    • (2008) J. Virol. , vol.82 , Issue.17 , pp. 8947-8950
    • Krasnitz, M.1    Levine, A.J.2    Rabadan, R.3
  • 22
    • 23944523882 scopus 로고    scopus 로고
    • Evolution of H9N2 influenza viruses from domestic poultry in Mainland China
    • Li C., Yu K., Tian G., Yu D., Liu L., Jing B., Ping J., Chen H. Evolution of H9N2 influenza viruses from domestic poultry in Mainland China. Virology 2005, 340(1):70-83.
    • (2005) Virology , vol.340 , Issue.1 , pp. 70-83
    • Li, C.1    Yu, K.2    Tian, G.3    Yu, D.4    Liu, L.5    Jing, B.6    Ping, J.7    Chen, H.8
  • 23
    • 33746167756 scopus 로고    scopus 로고
    • Detection of Hong Kong 97-like H5N1 influenza viruses from eggs of Vietnamese waterfowl
    • Li Y., Lin Z., Shi J., Qi Q., Deng G., Li Z., Wang X., Tian G., Chen H. Detection of Hong Kong 97-like H5N1 influenza viruses from eggs of Vietnamese waterfowl. Arch. Virol. 2006, 151(8):1615-1624.
    • (2006) Arch. Virol. , vol.151 , Issue.8 , pp. 1615-1624
    • Li, Y.1    Lin, Z.2    Shi, J.3    Qi, Q.4    Deng, G.5    Li, Z.6    Wang, X.7    Tian, G.8    Chen, H.9
  • 24
    • 0037334413 scopus 로고    scopus 로고
    • Neurovirulence in mice of H5N1 influenza virus genotypes isolated from Hong Kong poultry in 2001
    • Lipatov A.S., Krauss S., Guan Y., Peiris M., Rehg J.E., Perez D.R., Webster R.G. Neurovirulence in mice of H5N1 influenza virus genotypes isolated from Hong Kong poultry in 2001. J. Virol. 2003, 77(6):3816-3823.
    • (2003) J. Virol. , vol.77 , Issue.6 , pp. 3816-3823
    • Lipatov, A.S.1    Krauss, S.2    Guan, Y.3    Peiris, M.4    Rehg, J.E.5    Perez, D.R.6    Webster, R.G.7
  • 25
    • 0037251704 scopus 로고    scopus 로고
    • Phylogenetic analysis of the hemagglutinin genes of twenty-six avian influenza viruses of subtype H9N2 isolated from chickens in China during 1996-2001
    • Liu H., Liu X., Cheng J., Peng D., Jia L., Huang Y. Phylogenetic analysis of the hemagglutinin genes of twenty-six avian influenza viruses of subtype H9N2 isolated from chickens in China during 1996-2001. Avian Dis. 2003, 47(1):116-127.
    • (2003) Avian Dis. , vol.47 , Issue.1 , pp. 116-127
    • Liu, H.1    Liu, X.2    Cheng, J.3    Peng, D.4    Jia, L.5    Huang, Y.6
  • 26
    • 68549085170 scopus 로고    scopus 로고
    • Emergence of European avian influenza virus-like H1N1 swine influenza A viruses in China
    • Liu J., Bi Y., Qin K., Fu G., Yang J., Peng J., Ma G., Liu Q., Pu J., Tian F. Emergence of European avian influenza virus-like H1N1 swine influenza A viruses in China. J. Clin. Microbiol. 2009, 47(8):2643-2646.
    • (2009) J. Clin. Microbiol. , vol.47 , Issue.8 , pp. 2643-2646
    • Liu, J.1    Bi, Y.2    Qin, K.3    Fu, G.4    Yang, J.5    Peng, J.6    Ma, G.7    Liu, Q.8    Pu, J.9    Tian, F.10
  • 27
    • 0032889281 scopus 로고    scopus 로고
    • Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination
    • Lole K.S., Bollinger R.C., Paranjape R.S., Gadkari D., Kulkarni S.S., Novak N.G., Ingersoll R., Sheppard H.W., Ray S.C. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J. Virol. 1999, 73(1):152-160.
    • (1999) J. Virol. , vol.73 , Issue.1 , pp. 152-160
    • Lole, K.S.1    Bollinger, R.C.2    Paranjape, R.S.3    Gadkari, D.4    Kulkarni, S.S.5    Novak, N.G.6    Ingersoll, R.7    Sheppard, H.W.8    Ray, S.C.9
  • 29
    • 13444251528 scopus 로고    scopus 로고
    • RDP2: recombination detection and analysis from sequence alignments
    • Martin D.P., Williamson C., Posada D. RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 2005, 21(2):260-262.
    • (2005) Bioinformatics , vol.21 , Issue.2 , pp. 260-262
    • Martin, D.P.1    Williamson, C.2    Posada, D.3
  • 30
    • 77958113527 scopus 로고    scopus 로고
    • Identifying genetic markers of adaptation for surveillance of viral host jumps
    • Pepin K.M., Lass S., Pulliam J.R., Read A.F., Lloyd-Smith J.O. Identifying genetic markers of adaptation for surveillance of viral host jumps. Nat. Rev. Microbiol. 2010, 8(11):802-813.
    • (2010) Nat. Rev. Microbiol. , vol.8 , Issue.11 , pp. 802-813
    • Pepin, K.M.1    Lass, S.2    Pulliam, J.R.3    Read, A.F.4    Lloyd-Smith, J.O.5
  • 33
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0
    • Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0. Mol. Biol. Evol. 2007, 24(8):1596-1599.
    • (2007) Mol. Biol. Evol. , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 34
    • 0037425564 scopus 로고    scopus 로고
    • Mortality associated with influenza and respiratory syncytial virus in the United States
    • Thompson W.W., Shay D.K., Weintraub E., Brammer L., Cox N., Anderson L.J., Fukuda K. Mortality associated with influenza and respiratory syncytial virus in the United States. JAMA 2003, 289(2):179-186.
    • (2003) JAMA , vol.289 , Issue.2 , pp. 179-186
    • Thompson, W.W.1    Shay, D.K.2    Weintraub, E.3    Brammer, L.4    Cox, N.5    Anderson, L.J.6    Fukuda, K.7
  • 35
    • 49449106537 scopus 로고    scopus 로고
    • The 1918 "Spanish flu" in Spain
    • Trilla A., Trilla G., Daer C. The 1918 "Spanish flu" in Spain. Clin. Infect. Dis. 2008, 47(5):668-673.
    • (2008) Clin. Infect. Dis. , vol.47 , Issue.5 , pp. 668-673
    • Trilla, A.1    Trilla, G.2    Daer, C.3
  • 36
    • 0037066845 scopus 로고    scopus 로고
    • Questioning the evidence for genetic recombination in the 1918 "Spanish flu" virus
    • discussion 211
    • Worobey M., Rambaut A., Pybus O.G., Robertson D.L. Questioning the evidence for genetic recombination in the 1918 "Spanish flu" virus. Science 2002, 296(5566):211. discussion 211.
    • (2002) Science , vol.296 , Issue.5566 , pp. 211
    • Worobey, M.1    Rambaut, A.2    Pybus, O.G.3    Robertson, D.L.4
  • 37
    • 33947359061 scopus 로고    scopus 로고
    • Evolution and molecular epidemiology of H9N2 influenza A viruses from quail in southern China, 2000 to 2005
    • Xu K.M., Li K.S., Smith G.J., Li J.W., Tai H., Zhang J.X., Webster R.G., Peiris J.S., Chen H., Guan Y. Evolution and molecular epidemiology of H9N2 influenza A viruses from quail in southern China, 2000 to 2005. J. Virol. 2007, 81(6):2635-2645.
    • (2007) J. Virol. , vol.81 , Issue.6 , pp. 2635-2645
    • Xu, K.M.1    Li, K.S.2    Smith, G.J.3    Li, J.W.4    Tai, H.5    Zhang, J.X.6    Webster, R.G.7    Peiris, J.S.8    Chen, H.9    Guan, Y.10
  • 38
    • 67649199153 scopus 로고    scopus 로고
    • Isolation and genetic characterization of avian-like H1N1 and novel ressortant H1N2 influenza viruses from pigs in China
    • Yu H., Zhang P.C., Zhou Y.J., Li G.X., Pan J., Yan L.P., Shi X.X., Liu H.L., Tong G.Z. Isolation and genetic characterization of avian-like H1N1 and novel ressortant H1N2 influenza viruses from pigs in China. Biochem. Biophys. Res. Commun. 2009, 386(2):278-283.
    • (2009) Biochem. Biophys. Res. Commun. , vol.386 , Issue.2 , pp. 278-283
    • Yu, H.1    Zhang, P.C.2    Zhou, Y.J.3    Li, G.X.4    Pan, J.5    Yan, L.P.6    Shi, X.X.7    Liu, H.L.8    Tong, G.Z.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.