PCR and isothermal-based molecular identification of the stored-product psocid pest Lepinotus reticulatus (Psocoptera: Trogiidae)

Journal of Stored Products Research

Volumn 49, Issue , 2012, Pages 184-188

  Arif, Mohammad ^a   Ochoa Corona, Francisco M ^a   Opit, George P ^a   Li, Zhi Hong ^b   Kučerová, Zuzana ^c   Stejskal, Václav ^c   Yang, Qian Qian ^b  

^a OKLAHOMA STATE UNIVERSITY   (United States)

^b CHINA AGRICULTURAL UNIVERSITY   (China)

^c CROP RESEARCH INSTITUTE   (Czech Republic)

Author keywords

CO1; Isothermal amplification; Lepinotus; Molecular diagnostics; SYBR Green qPCR

Indexed keywords

LEPINOTUS; LEPINOTUS RETICULATUS; LIPOSCELIS; PSOCIDAE; PSOCOPTERA; TROGIIDAE;

EID: 84862800775     PISSN: 0022474X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jspr.2012.02.001     Document Type: Article

References (42)

1. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool. Journal of Molecular Biology 1990, 215:403-410.
2. Arikawa E., Sun Y., Wang J., Zhou Q., Ning B., Dial S.L., Guo L., Yang J. Cross-platform comparison of SYBR Green real-time PCR with TaqMan PCR, microarrays and other gene expression measurement technologies evaluated in the MicroArray Quality Control (MAQC) study. BioMed Central Genomics 2008, 9:1-12.
3. Bustin S.A. Real-time, fluorescence-based quantitative PCR: a snapshot of current procedures and preferences. Expert Review of Molecular Diagnostics 2005, 5:493-498.
4. Cha R.S., Thilly W.G. Specificity, efficiency, and fidelity of PCR. PCR Methods and Applications 1993, 3:S18-S29.
5. Chomic A., Winder L., Armstrong K.F., Pearson M.N., Hampton J.G. Detection and discrimination of members of the family Luteoviridae by real-time PCR and SYBR (R) GreenER (TM) melting curve analysis. Journal of Virological Methods 2011, 171:46-52.
6. Gautam S.G., Opit G.P., Giles K.L. Population growth and development of the psocid Liposcelis rufa (Psocoptera: Liposcelididae) at constant temperatures and relative humidities. Journal of Economic Entomology 2010, 103:1920-1928.
7. Harper S.J., Delmiglio C., Ward L.I., Clover G.R.G. Detection of Tomato black ring virus by real-time one-step RT-PCR. Journal of Virological Methods 2011, 171:190-194.
8. Jeong Y.J., Park K., Kim D.E. Isothermal DNA amplification in vitro: the helicase-dependent amplification system. Cellular & Molecular Life Sciences 2009, 66:3325-3336.
9. Kalinović I., Rozman V., Liska A. Significance and feeding of psocids (Liposcelididae, Psocoptera) with microorganisms. Proceedings of the Ninth International Working Conference on Stored Product Protection, 15-18 October 2006, São Paulo, Brazil 2006, 1087-1094. Brazilian Post-harvest Association DABRAPOS, Passa Fundo, RS, Brazil. I. Lorini, B. Bacaltchuk, H. Beckel, D. Deckers, E. Sundfeld, J.P. dos Santos, J.D. Biagi, J.C. Celaro, L.R. D'A Faroni, L.D.O.F. Bortolini (Eds.).
10. Kim J.S., Lee G.G., Kim J., Kwon J.Y., Kwon S.T. The development of rapid real-time PCR detection system for Vibrio parahaemolyticus in raw oyster. Letters in Applied Microbiology 2008, 46:649-654.
11. Kučerová Z. Stored product psocids (Psocoptera): external morphology of eggs. European Journal of Entomology 2002, 99:491-503.
12. Kučerová Z., Li Z., Hromádková J. Morphology of nymphs of common stored product psocids (Psocoptera: Liposcelididae). Journal of Stored Products Research 2009, 45:54-60.
13. Larkin M.A., Blackshields G., Brown N.P., Chenna R., McGettigan P.A., McWilliam H., Valentin F., Wallace I.M., Wilm A., Lopez R., Thompson J.D., Gibson T.J., Higgins D.G. ClustalW2 and ClustalX version 2. Bioinformatics 2007, 23:2947-2948.
14. Li Z.X. Molecular differentiation of the four most commonly occurring Trichogramma (Hymenoptera: Trichogrammatidae) species in China. European Journal of Entomology 2007, 104:363-367.
15. Li Z.H., Kučerová Z., Zhao S., Stejskal V., Opit G., Qin M. Morphological and molecular identification of three geographical populations of the storage pest Liposcelis bostrychophila (Psocoptera). Journal of Stored Products Research 2011, 47:168-172.
16. Litjens P., Lessinger A.C., Lima A.M. Characterization of the screwworm flies Cochliomyia hominivorax and Cochliomyia macellaria by PCR-RFLP of mitochondrial DNA. Medical and Veterinary Entomology 2001, 15:183-188.
17. Llorente B., Bravo-Almonacid F., Cvitanich C., Orlowska E., Torres H.N., Flawia M.M., Alonso G.D. A quantitative real-time PCR method for in planta monitoring of Phytophthora infestans growth. Letters in Applied Microbiology 2010, 51:603-610.
18. Maeda H., Fujimoto C., Haruki Y., Maeda T., Kokeguchi S., Petelin M., Arai H., Tanimoto I., Nishimura F., Takashiba S. Quantitative real-time PCR using TaqMan and SYBR Green for Actinobacillus actinomycetemcomitans, Porphyromonas gingivalis, Prevotella intermedia, tetQ gene and total bacteria. FEMS Immunology and Medical Microbiology 2003, 39:81-86.
19. McFarlane J.A. Damage to milled rice by psocids. Tropical Stored Products Information 1982, 44:3-10.
20. Muraji M., Nakahara S. Discrimination among pest species of Bactrocera (Diptera, Tephritidae) based on PCRRFLP of the mitochondrial DNA. Applied Entomology and Zoology 2002, 37:437-446.
21. Nakamura S., Ohtsubo K. PCR method for the detection and identification of cultivars of rice flours used in yeast leavened breads containing both wheat and rice flours. Journal of Cereal Science 2010, 52:16-21.
22. Nicholas K.B., Nicholas H.B. Genedoc, a Tool for Editing and Annotating Multiple Sequence Alignments 1997, http://www.psc.edu/biomed/genedoc.
23. Obr S. Psocoptera of food-processing plants and storages, dwellings and collections of natural objects in Czechoslovakia. Acta Entomologica Bohemoslovaca 1978, 75:226-242.
24. Opit G.P., Throne J.E., Payton M.E. Reproductive parameters of the parthenogenetic psocid Lepinotus reticulatus (Psocoptera: Trogiidae) at constant temperatures. Environmental Entomology 2010, 39:1004-1011.
25. Pirc M., Ravnikar M., Tomlinson J., Dreo T. Improved fireblight diagnostics using quantitative real-time PCR detection of Erwinia amylovora chromosomal DNA. Plant Pathology 2009, 58:872-881.
26. Qin M., Li Z.H., Kučerová Z., Cao Y., Stejskal V. Rapid discrimination of the common species of the stored product pest Liposcelis (Psocoptera: Liposcelididae) from China and the Czech Republic, based on PCR-RFLP analysis. European Journal of Entomology 2008, 105:713-717.
27. Rozen S., Skaletsky H.J. Primer3 on the WWW for general users and for biologist programmers. Bioinformatics Methods and Protocols: Methods in Molecular Biology 2000, 365-386. Humana Press, Totowa, NJ. S. Krawetz, S. Misener (Eds.).
28. Sidik M., Halid H., Pranata R.I. Pest problems and the use of pesticides in grain storage in Indonesia. Pesticides and Humid Tropical Grain Storage Systems. Proceedings, International Seminar, 27-30 May 1985, Manila, Philippines. No. 14. ACIAR Proceedings, Canberra, Australia 1986, 37-43. B.R. Champ, E. Highley (Eds.).
29. Simon C., Frati F., Beckenbach A., Crespi B., Liu H., Flook P. Evolution, weighting and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Annals of the Entomological Society of America 1994, 87:651-701.
30. Sinha R.N. Population dynamics of psocoptera in farm-stored grain and oilseed. Canadian Journal of Zoology 1988, 66:2618-2627.
31. Sperling F.A.H., Anderson G.S., Hickey D.A. DNA based approach to the identification of insect species used for postmortem interval estimation. Journal of Forensic Science 1994, 39:418-427.
32. Throne J.E., Opit G.P., Flinn P.W. Seasonal distribution of psocids in stored wheat. Proceedings of the Ninth International Working Conference on Stored Product Protection, 15-18 October 2006, São Paulo, Brazil 2006, 1095-1103. Brazilian Post-harvest Association DABRAPOS, Passa Fundo, RS, Brazil. I. Lorini, B. Bacaltchuk, H. Beckel, D. Deckers, E. Sundfeld, J.P. dos Santos, J.D. Biagi, J.C. Celaro, L.R. D'A Faroni, L.D.O.F. Bortolini (Eds.).
33. Tomlinson J.A., Dickinson M.J., Boonham N. Rapid detection of Phytophthora ramorum and P. kernoviae by two-minute DNA extraction followed by isothermal amplification and amplicon detection by generic lateral flow device. Phytopathology 2010, 100:143-149.
34. Tuda M., Fukatsu T., Shimada M. Species differentiation of bruchid beetles (Coleoptera: Bruchidae) analyzed by mitochondrial DNA polymorphism. Applied Entomology and Zoology 1995, 30:377-380.
35. Vincelli P., Tisserat N. Nucleic acid-based pathogen detection in applied plant pathology. Plant Disease 2008, 92:660-669.
36. Vincent M., Xu Y., Kong H. Helicase-dependent isothermal DNA amplification. EMBO Reports 2004, 5:795-800.
37. Walker G.T., Fraiser M.S., Schram J.L., Little M.C., Nadeau J.G., Malinowski D.P. Strand displacement amplification - an isothermal, in vitro DNA amplification technique. Nucleic Acids Research 1992, 20:1691-1696.
38. Wilcox T.P., Hugg L., Zeh J.A., Zeh D.W. Mitochondrial DNA sequencing reveals extreme genetic differentiation in a cryptic species complex of neotropical pseudoscorpions. Molecular Phylogenetics and Evolution 1997, 7:208-216.
39. Yang Q., Kucerová Z., Li Z., Kalinovi I., Stejskal V., Opit G., Cao Y. Diagnosis of Liposcelis entomophila (Insecta: Psocodea: Liposcelididae) based on morphological characteristics and DNA barcodes. Journal of Stored Products Research 2012, 48:120-125.
40. Zapata M.A., Cienfuegos A.V., Quiros O.I., Quinones M.L., Luckhart S., Correa M.M. Discrimination of seven Anopheles species from San Pedro de Uraba, Antioquia, Colombia, by polymerase chain reaction-restriction fragment length polymorphism analysis of its sequences. American Journal of Tropical Medicine and Hygiene 2007, 77:67-72.
41. Zhang G.F., Lu Z.C., Wan F.H., Lovei G.L. Real-time PCR quantification of Bemisia tabaci (Homoptera: Aleyrodidae) B-biotype remains in predator guts. Molecular Ecology Notes 2007, 7:947-954.
42. Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Research 2003, 31:3406-3415.