-
1
-
-
52649140093
-
Formation of an RNA polymerase II preinitiation complex on an RNA promoter derived from the hepatitis delta virus RNA genome
-
Abrahem, A. & Pelchat, M. (2008). Formation of an RNA polymerase II preinitiation complex on an RNA promoter derived from the hepatitis delta virus RNA genome. Nucleic Acids Res 36, 5201-5211.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 5201-5211
-
-
Abrahem, A.1
Pelchat, M.2
-
2
-
-
19244375613
-
Viroid processing: Switch from cleavage to ligation is driven by a change from a tetraloop to a loop E conformation
-
Baumstark, T., Schröder, A. R. & Riesner, D. (1997). Viroid processing: switch from cleavage to ligation is driven by a change from a tetraloop to a loop E conformation. EMBO J 16, 599-610.
-
(1997)
EMBO J
, vol.16
, pp. 599-610
-
-
Baumstark, T.1
Schröder, A.R.2
Riesner, D.3
-
3
-
-
0028054388
-
In situ hybridization localizes avocado sunblotch viroid on chloroplast thylakoid membranes and coconut cadang cadang viroid in the nucleus
-
Bonfiglioli, R. D., McFadden, G. I. & Symons, R. H. (1994). In situ hybridization localizes avocado sunblotch viroid on chloroplast thylakoid membranes and coconut cadang cadang viroid in the nucleus. Plant J 6, 99-103.
-
(1994)
Plant J
, vol.6
, pp. 99-103
-
-
Bonfiglioli, R.D.1
McFadden, G.I.2
Symons, R.H.3
-
4
-
-
0030049750
-
Tissue and intra-cellular distribution of coconut cadang cadang viroid and citrus exocortis viroid determined by in situ hybridization and confocal laser scanning and transmission electron microscopy
-
Bonfiglioli, R. D., Webb, D. R. & Symons, R. H. (1996). Tissue and intra-cellular distribution of coconut cadang cadang viroid and citrus exocortis viroid determined by in situ hybridization and confocal laser scanning and transmission electron microscopy. Plant J 9, 457-465.
-
(1996)
Plant J
, vol.9
, pp. 457-465
-
-
Bonfiglioli, R.D.1
Webb, D.R.2
Symons, R.H.3
-
5
-
-
0021351807
-
A replication cycle for viroids and other small infectious RNA's
-
Branch, A. D. & Robertson, H. D. (1984). A replication cycle for viroids and other small infectious RNA's. Science 223, 450-455.
-
(1984)
Science
, vol.223
, pp. 450-455
-
-
Branch, A.D.1
Robertson, H.D.2
-
6
-
-
0028900584
-
Transcription-dependent redistribution of the large subunit of RNA polymerase II to discrete nuclear domains
-
Bregman, D. B., Du, L., van der Zee, S. & Warren, S. L. (1995). Transcription-dependent redistribution of the large subunit of RNA polymerase II to discrete nuclear domains. J Cell Biol 129, 287-298.
-
(1995)
J Cell Biol
, vol.129
, pp. 287-298
-
-
Bregman, D.B.1
Du, L.2
van der Zee, S.3
Warren, S.L.4
-
7
-
-
0024565492
-
Studies on the inhibition by a-amanitin of single-step addition reactions and productive RNA synthesis catalysed by wheat-germ RNA polymerase II
-
de Mercoyrol, L., Job, C. & Job, D. (1989). Studies on the inhibition by a-amanitin of single-step addition reactions and productive RNA synthesis catalysed by wheat-germ RNA polymerase II. Biochem J 258, 165-169.
-
(1989)
Biochem J
, vol.258
, pp. 165-169
-
-
de Mercoyrol, L.1
Job, C.2
Job, D.3
-
8
-
-
84857751694
-
Viroids: Self-replicating, mobile, and fast-evolving noncoding regulatory RNAs
-
Ding, B. (2010). Viroids: self-replicating, mobile, and fast-evolving noncoding regulatory RNAs. WIREs RNA 1, 362-375.
-
(2010)
WIREs RNA
, vol.1
, pp. 362-375
-
-
Ding, B.1
-
9
-
-
0242468044
-
Structural characterization of the 69 nucleotide potato spindle tuber viroid left-terminal domain by NMR and thermodynamic analysis
-
Dingley, A. J., Steger, G., Esters, B., Riesner, D. & Grzesiek, S. (2003). Structural characterization of the 69 nucleotide potato spindle tuber viroid left-terminal domain by NMR and thermodynamic analysis. J Mol Biol 334, 751-767.
-
(2003)
J Mol Biol
, vol.334
, pp. 751-767
-
-
Dingley, A.J.1
Steger, G.2
Esters, B.3
Riesner, D.4
Grzesiek, S.5
-
10
-
-
0033984806
-
Specific HDV RNAtemplated transcription by pol II in vitro
-
Filipovska, J. & Konarska, M. M. (2000). Specific HDV RNAtemplated transcription by pol II in vitro. RNA 6, 41-54.
-
(2000)
RNA
, vol.6
, pp. 41-54
-
-
Filipovska, J.1
Konarska, M.M.2
-
11
-
-
0000189356
-
Synthesis of RNAs specific to citrus exocortis viroid by a fraction rich in nuclei from infected Gynura aurantiaca: Examination of the nature of the products and solubilization of the polymerase-template complex
-
Flores, R. (1989). Synthesis of RNAs specific to citrus exocortis viroid by a fraction rich in nuclei from infected Gynura aurantiaca: examination of the nature of the products and solubilization of the polymerase-template complex. J Gen Virol 70, 2695-2706.
-
(1989)
J Gen Virol
, vol.70
, pp. 2695-2706
-
-
Flores, R.1
-
12
-
-
0020418054
-
Properties of a cell-free system for synthesis of citrus exocortis viroid
-
Flores, R. & Semancik, J. S. (1982). Properties of a cell-free system for synthesis of citrus exocortis viroid. Proc Natl Acad Sci U S A 79, 6285-6288.
-
(1982)
Proc Natl Acad Sci U S A
, vol.79
, pp. 6285-6288
-
-
Flores, R.1
Semancik, J.S.2
-
13
-
-
24944468730
-
Viroids and viroid-host interactions
-
Flores, R., Herná ndez, C., Martínez de Alba, A. E., Daro s, J. A. and Di Serio, F. (2005). Viroids and viroid-host interactions. Annu Rev Phytopathol 43, 117-139.
-
(2005)
Annu Rev Phytopathol
, vol.43
, pp. 117-139
-
-
Flores, R.1
Hernández, C.2
de Martínez, A.A.E.3
Daros, J.A.4
di Serio, F.5
-
14
-
-
79954498855
-
Rolling-circle replication of viroids, viroid-like satellite RNAs and hepatitis delta virus: Variations on a theme
-
Flores, R., Grubb, D., Elleuch, A., Nohales, M. A., Delgado, S. & Gago, S. (2011). Rolling-circle replication of viroids, viroid-like satellite RNAs and hepatitis delta virus: variations on a theme. RNA Biol 8, 200-206.
-
(2011)
RNA Biol
, vol.8
, pp. 200-206
-
-
Flores, R.1
Grubb, D.2
Elleuch, A.3
Nohales, M.A.4
Delgado, S.5
Gago, S.6
-
15
-
-
0037234618
-
A new structural motif in the left terminal domain of large viroids identified by covariation analysis
-
Gast, F. U. (2003). A new structural motif in the left terminal domain of large viroids identified by covariation analysis. Virus Genes 26, 19-23.
-
(2003)
Virus Genes
, vol.26
, pp. 19-23
-
-
Gast, F.U.1
-
16
-
-
0030580111
-
Secondary structure probing of potato spindle tuber viroid (PSTVd) and sequence comparison with other small pathogenic RNA replicons provides evidence for central non-canonical base-pairs, large A-rich loops, and a terminal branch
-
Gast, F. U., Kempe, D., Spieker, R. L. & Sä nger, H. L. (1996). Secondary structure probing of potato spindle tuber viroid (PSTVd) and sequence comparison with other small pathogenic RNA replicons provides evidence for central non-canonical base-pairs, large A-rich loops, and a terminal branch. J Mol Biol 262, 652-670.
-
(1996)
J Mol Biol
, vol.262
, pp. 652-670
-
-
Gast, F.U.1
Kempe, D.2
Spieker, R.L.3
Sänger, H.L.4
-
17
-
-
0021759608
-
Viroid replication: Equilibrium association constant and comparative activity measurements for the viroid-polymerase interaction
-
Goodman, T. C., Nagel, L., Rappold, W., Klotz, G. & Riesner, D. (1984). Viroid replication: equilibrium association constant and comparative activity measurements for the viroid-polymerase interaction. Nucleic Acids Res 12, 6231-6246.
-
(1984)
Nucleic Acids Res
, vol.12
, pp. 6231-6246
-
-
Goodman, T.C.1
Nagel, L.2
Rappold, W.3
Klotz, G.4
Riesner, D.5
-
18
-
-
33751430926
-
The human RNA polymerase II interacts with the terminal stemloop regions of the hepatitis delta virus RNA genome
-
Greco-Stewart, V. S., Miron, P., Abrahem, A. & Pelchat, M. (2007). The human RNA polymerase II interacts with the terminal stemloop regions of the hepatitis delta virus RNA genome. Virology 357, 68-78.
-
(2007)
Virology
, vol.357
, pp. 68-78
-
-
Greco-Stewart, V.S.1
Miron, P.2
Abrahem, A.3
Pelchat, M.4
-
19
-
-
0028229365
-
Agrobacterium-mediated inoculation of PSTVd cDNAs onto tomato reveals the biological effect of apparently lethal mutations
-
Hammond, R. W. (1994). Agrobacterium-mediated inoculation of PSTVd cDNAs onto tomato reveals the biological effect of apparently lethal mutations. Virology 201, 36-45.
-
(1994)
Virology
, vol.201
, pp. 36-45
-
-
Hammond, R.W.1
-
20
-
-
0023212286
-
Mutational analysis of potato spindle tuber viroid reveals complex relationships between structure and infectivity
-
Hammond, R. W. & Owens, R. A. (1987). Mutational analysis of potato spindle tuber viroid reveals complex relationships between structure and infectivity. Proc Natl Acad Sci U S A 84, 3967- 3971.
-
(1987)
Proc Natl Acad Sci U S a 84, 3967-
, pp. 3971
-
-
Hammond, R.W.1
Owens, R.A.2
-
21
-
-
0024832780
-
Imaging of viroids in nuclei from tomato leaf tissue by in situ hybridization and confocal laser scanning microscopy
-
Harders, J., Lukács, N., Robert-Nicoud, M., Jovin, T. M. & Riesner, D. (1989). Imaging of viroids in nuclei from tomato leaf tissue by in situ hybridization and confocal laser scanning microscopy. EMBO J 8, 3941-3949.
-
(1989)
EMBO J
, vol.8
, pp. 3941-3949
-
-
Harders, J.1
Lukács, N.2
Robert-Nicoud, M.3
Jovin, T.M.4
Riesner, D.5
-
22
-
-
0043123153
-
Vienna RNA secondary structure server
-
Hofacker, I. L. (2003). Vienna RNA secondary structure server. Nucleic Acids Res 31, 3429-3431.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3429-3431
-
-
Hofacker, I.L.1
-
23
-
-
0030989392
-
Destabilization of potato spindle tuber viroid by mutations in the left terminal loop
-
Hu, Y., Feldstein, P. A., Hammond, J., Hammond, R. W., Bottino, P. J. & Owens, R. A. (1997). Destabilization of potato spindle tuber viroid by mutations in the left terminal loop. J Gen Virol 78, 1199-1206.
-
(1997)
J Gen Virol
, vol.78
, pp. 1199-1206
-
-
Hu, Y.1
Feldstein, P.A.2
Hammond, J.3
Hammond, R.W.4
Bottino, P.J.5
Owens, R.A.6
-
24
-
-
0022344804
-
Domains in viroids: Evidence of intermolecular RNA rearrangements and their contribution to viroid evolution
-
Keese, P. & Symons, R. H. (1985). Domains in viroids: evidence of intermolecular RNA rearrangements and their contribution to viroid evolution. Proc Natl Acad Sci U S A 82, 4582-4586.
-
(1985)
Proc Natl Acad Sci U S A
, vol.82
, pp. 4582-4586
-
-
Keese, P.1
Symons, R.H.2
-
25
-
-
33744816589
-
Transcription of potato spindle tuber viroid by RNA polymerase II starts in the left terminal loop
-
Kolonko, N., Bannach, O., Aschermann, K., Hu, K. H., Moors, M., Schmitz, M., Steger, G. & Riesner, D. (2006). Transcription of potato spindle tuber viroid by RNA polymerase II starts in the left terminal loop. Virology 347, 392-404.
-
(2006)
Virology
, vol.347
, pp. 392-404
-
-
Kolonko, N.1
Bannach, O.2
Aschermann, K.3
Hu, K.H.4
Moors, M.5
Schmitz, M.6
Steger, G.7
Riesner, D.8
-
26
-
-
0027345787
-
Primary and secondary structure of a 360-nucleotide isolate of potato spindle tuber viroid
-
Lakshman, D. K. & Tavantzis, S. M. (1993). Primary and secondary structure of a 360-nucleotide isolate of potato spindle tuber viroid. Arch Virol 128, 319-331.
-
(1993)
Arch Virol
, vol.128
, pp. 319-331
-
-
Lakshman, D.K.1
Tavantzis, S.M.2
-
27
-
-
0018394988
-
Viroid replication is inhibited by a-amanitin
-
Mü hlbach, H. P. and Sä nger, H. L. (1979). Viroid replication is inhibited by a-amanitin. Nature 278, 185-188.
-
(1979)
Nature
, vol.278
, pp. 185-188
-
-
Mühlbach, H.P.1
Sänger, H.L.2
-
28
-
-
20044387947
-
Mutational analysis does not support the existence of a putative tertiary structural element in the left terminal domain of Potato spindle tuber viroid
-
Owens, R. A. & Thompson, S. M. (2005). Mutational analysis does not support the existence of a putative tertiary structural element in the left terminal domain of Potato spindle tuber viroid. J Gen Virol 86, 1835-1839.
-
(2005)
J Gen Virol
, vol.86
, pp. 1835-1839
-
-
Owens, R.A.1
Thompson, S.M.2
-
29
-
-
0141815505
-
Investigating RNA polymerase II carboxyl-terminal domain (CTD) phosphorylation
-
Palancade, B. & Bensaude, O. (2003). Investigating RNA polymerase II carboxyl-terminal domain (CTD) phosphorylation. Eur J Biochem 270, 3859-3870.
-
(2003)
Eur J Biochem
, vol.270
, pp. 3859-3870
-
-
Palancade, B.1
Bensaude, O.2
-
30
-
-
2642549770
-
Binding site of Escherichia coli RNA polymerase to an RNA promoter
-
Pelchat, M. & Perreault, J. P. (2004). Binding site of Escherichia coli RNA polymerase to an RNA promoter. Biochem Biophys Res Commun 319, 636-642.
-
(2004)
Biochem Biophys Res Commun
, vol.319
, pp. 636-642
-
-
Pelchat, M.1
Perreault, J.P.2
-
31
-
-
0037150071
-
Characterization of a viroid-derived RNA promoter for the DNA-dependent RNA polymerase from Escherichia coli
-
Pelchat, M., Grenier, C. & Perreault, J. P. (2002). Characterization of a viroid-derived RNA promoter for the DNA-dependent RNA polymerase from Escherichia coli. Biochemistry 41, 6561-6571.
-
(2002)
Biochemistry
, vol.41
, pp. 6561-6571
-
-
Pelchat, M.1
Grenier, C.2
Perreault, J.P.3
-
32
-
-
0345376999
-
Differential subnuclear localization of RNA strands of opposite polarity derived from an autonomously replicating viroid
-
Qi, Y. & Ding, B. (2003). Differential subnuclear localization of RNA strands of opposite polarity derived from an autonomously replicating viroid. Plant Cell 15, 2566-2577.
-
(2003)
Plant Cell
, vol.15
, pp. 2566-2577
-
-
Qi, Y.1
Ding, B.2
-
33
-
-
0019402207
-
DNA-dependent RNA polymerase II of plant origin transcribes viroid RNA into fulllength copies
-
Rackwitz, H. R., Rohde, W. &Sä nger, H. L. (1981). DNA-dependent RNA polymerase II of plant origin transcribes viroid RNA into fulllength copies. Nature 291, 297-301.
-
(1981)
Nature
, vol.291
, pp. 297-301
-
-
Rackwitz, H.R.1
Rohde, W.2
Sänger, H.L.3
-
34
-
-
0028037771
-
Infectivity of linear monomeric transcripts of citrus exocortis viroid: Terminal sequence requirements for processing
-
Rakowski, A. G. & Symons, R. H. (1994). Infectivity of linear monomeric transcripts of citrus exocortis viroid: terminal sequence requirements for processing. Virology 203, 328-335.
-
(1994)
Virology
, vol.203
, pp. 328-335
-
-
Rakowski, A.G.1
Symons, R.H.2
-
35
-
-
0000476212
-
Properties of a viroid-replicating complex solubilized from nuclei
-
Rivera-Bustamante, R. F. & Semancik, J. S. (1989). Properties of a viroid-replicating complex solubilized from nuclei. J Gen Virol 70, 2707-2716.
-
(1989)
J Gen Virol
, vol.70
, pp. 2707-2716
-
-
Rivera-Bustamante, R.F.1
Semancik, J.S.2
-
36
-
-
33645376746
-
The Subviral RNA Database: A toolbox for viroids, the hepatitis delta virus and satellite RNAs research
-
Rocheleau, L. & Pelchat, M. (2006). The Subviral RNA Database: a toolbox for viroids, the hepatitis delta virus and satellite RNAs research. BMC Microbiol 6, 24.
-
(2006)
BMC Microbiol
, vol.6
, pp. 24
-
-
Rocheleau, L.1
Pelchat, M.2
-
37
-
-
0001668440
-
Involvement of nuclear DNA-dependent RNA polymerases in potato spindle tuber viroid replication: A reevaluation
-
Schindler, I. M. & Muhlbach, H. P. (1992). Involvement of nuclear DNA-dependent RNA polymerases in potato spindle tuber viroid replication: a reevaluation. Plant Sci 84, 221-229.
-
(1992)
Plant Sci
, vol.84
, pp. 221-229
-
-
Schindler, I.M.1
Muhlbach, H.P.2
-
38
-
-
0037324320
-
A mini-RNA containing the tetraloop, wobble-pair and loop E motifs of the central conserved region of potato spindle tuber viroid is processed into a minicircle
-
Schrader, O., Baumstark, T. & Riesner, D. (2003). A mini-RNA containing the tetraloop, wobble-pair and loop E motifs of the central conserved region of potato spindle tuber viroid is processed into a minicircle. Nucleic Acids Res 31, 988-998.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 988-998
-
-
Schrader, O.1
Baumstark, T.2
Riesner, D.3
-
39
-
-
0000468777
-
Subcellular localization of viroids in highly purified nuclei from tomato leaf tissue
-
Schumacher, J., Sä nger, H. L. &Riesner, D. (1983). Subcellular localization of viroids in highly purified nuclei from tomato leaf tissue. EMBO J 2, 1549-1555.
-
(1983)
EMBO J
, vol.2
, pp. 1549-1555
-
-
Schumacher, J.1
Sänger, H.L.2
Riesner, D.3
-
40
-
-
0021135909
-
Optimal conditions for cellfree synthesis of citrus exocortis viroid and the question of specificity of RNA polymerase activity
-
Semancik, J. S. & Harper, K. L. (1984). Optimal conditions for cellfree synthesis of citrus exocortis viroid and the question of specificity of RNA polymerase activity. Proc Natl Acad Sci U S A 81, 4429-4433.
-
(1984)
Proc Natl Acad Sci U S A
, vol.81
, pp. 4429-4433
-
-
Semancik, J.S.1
Harper, K.L.2
-
41
-
-
0043269205
-
The RNA polymerase II core promoter
-
Smale, S. T. & Kadonaga, J. T. (2003). The RNA polymerase II core promoter. Annu Rev Biochem 72, 449-479.
-
(2003)
Annu Rev Biochem
, vol.72
, pp. 449-479
-
-
Smale, S.T.1
Kadonaga, J.T.2
-
42
-
-
77949421377
-
Origin of hepatitis delta virus
-
Taylor, J. & Pelchat, M. (2010). Origin of hepatitis delta virus. Future Microbiol 5, 393-402.
-
(2010)
Future Microbiol
, vol.5
, pp. 393-402
-
-
Taylor, J.1
Pelchat, M.2
-
43
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
44
-
-
54049098797
-
Viroids
-
Tsagris, E. M., Martínez de Alba, A. E., Gozmanova, M. & Kalantidis, K. (2008). Viroids. Cell Microbiol 10, 2168-2179.
-
(2008)
Cell Microbiol
, vol.10
, pp. 2168-2179
-
-
Tsagris, E.M.1
de Martínez, A.A.E.2
Gozmanova, M.3
Kalantidis, K.4
-
45
-
-
0033392761
-
Citrus exocortis viroid RNA is associated with the largest subunit of RNA polymerase II in tomato in vivo
-
Warrilow, D. & Symons, R. H. (1999). Citrus exocortis viroid RNA is associated with the largest subunit of RNA polymerase II in tomato in vivo. Arch Virol 144, 2367-2375.
-
(1999)
Arch Virol
, vol.144
, pp. 2367-2375
-
-
Warrilow, D.1
Symons, R.H.2
-
46
-
-
79251476549
-
Use of randomly mutagenized genomic cDNA banks of potato spindle tuber viroid to screen for viable versions of the viroid genome
-
Wiesyk, A., Candresse, T., Zagó rski, W. &Gó ra-Sochacka, A. (2011). Use of randomly mutagenized genomic cDNA banks of potato spindle tuber viroid to screen for viable versions of the viroid genome. J Gen Virol 92, 457-466.
-
(2011)
J Gen Virol
, vol.92
, pp. 457-466
-
-
Wiesyk, A.1
Candresse, T.2
Zagórski, W.3
Góra-Sochacka, A.4
-
47
-
-
0008957874
-
Inhibition of hop stunt viroid replication by a-amanitin
-
Yoshikawa, N. & Takahashi, T. (1986). Inhibition of hop stunt viroid replication by a-amanitin. Z Pflanzenkr Pflanzenschutz 93, 62-71.
-
(1986)
Z Pflanzenkr Pflanzenschutz
, vol.93
, pp. 62-71
-
-
Yoshikawa, N.1
Takahashi, T.2
-
48
-
-
43549096950
-
A genomic map of viroid RNA motifs critical for replication and systemic trafficking
-
Zhong, X., Archual, A. J., Amin, A. A. & Ding, B. (2008). A genomic map of viroid RNA motifs critical for replication and systemic trafficking. Plant Cell 20, 35-47.
-
(2008)
Plant Cell
, vol.20
, pp. 35-47
-
-
Zhong, X.1
Archual, A.J.2
Amin, A.A.3
Ding, B.4
-
49
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker, M. (2003). Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31, 3406-3415.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
|