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Volumn 92, Issue 2, 2011, Pages 457-466

Use of randomly mutagenized genomic cDNA banks of potato spindle tuber viroid to screen for viable versions of the viroid genome

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; GENOMIC DNA;

EID: 79251476549     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.026286-0     Document Type: Article
Times cited : (5)

References (43)
  • 1
    • 19244375613 scopus 로고    scopus 로고
    • Viroid processing: Switch from cleavage to ligation is driven by a change from a tetraloop to a loop E conformation
    • Baumstark, T., Schröder, A. & Riesner, D. (1997). Viroid processing: switch from cleavage to ligation is driven by a change from a tetraloop to a loop E conformation. EMBO J 16, 599-610.
    • (1997) EMBO J , vol.16 , pp. 599-610
    • Baumstark, T.1    Schröder, A.2    Riesner, D.3
  • 2
    • 0034000967 scopus 로고    scopus 로고
    • Agrobacterium transient expression system as a tool for the isolation of disease resistance genes: Application to the Rx2 locus in potato
    • Bendahmane, A., Querci, M., Kanyuka, K. & Baulcombe, D. C. (2000). Agrobacterium transient expression system as a tool for the isolation of disease resistance genes: Application to the Rx2 locus in potato. Plant J 21, 73-81.
    • (2000) Plant J , vol.21 , pp. 73-81
    • Bendahmane, A.1    Querci, M.2    Kanyuka, K.3    Baulcombe, D.C.4
  • 3
    • 0025267676 scopus 로고
    • The role of the viroid central conserved region in cDNA infectivity
    • Candresse, T., Diener, T. O. & Owens, R. A. (1990). The role of the viroid central conserved region in cDNA infectivity. Virology 175, 232-237.
    • (1990) Virology , vol.175 , pp. 232-237
    • Candresse, T.1    Diener, T.O.2    Owens, R.A.3
  • 4
    • 0242468044 scopus 로고    scopus 로고
    • Structural characterization of the 69 nucleotide potato spindle tuber viroid left-terminal domain by NMR and thermodynamic analysis
    • Dingley, A. J., Steger, G., Esters, B., Riesner, D. & Grzesiek, S. (2003). Structural characterization of the 69 nucleotide potato spindle tuber viroid left-terminal domain by NMR and thermodynamic analysis. J Mol Biol 334, 751-767.
    • (2003) J Mol Biol , vol.334 , pp. 751-767
    • Dingley, A.J.1    Steger, G.2    Esters, B.3    Riesner, D.4    Grzesiek, S.5
  • 5
    • 1642519268 scopus 로고    scopus 로고
    • Classification
    • Edited by A. Hadidi, R. Flores, R. W. Randles & J. S. Semancik. Collingwood, VIC, Australia: CSIRO Publishing
    • Flores, R., Randles, J. W. & Owens, R. A. (2003). Classification. In Viroids, pp. 71-75. Edited by A. Hadidi, R. Flores, R. W. Randles & J. S. Semancik. Collingwood, VIC, Australia: CSIRO Publishing.
    • (2003) Viroids , pp. 71-75
    • Flores, R.1    Randles, J.W.2    Owens, R.A.3
  • 7
    • 0037234618 scopus 로고    scopus 로고
    • A new structural motif in the left terminal domain of large viroids identified by covariation analysis
    • Gast, F. U. (2003). A new structural motif in the left terminal domain of large viroids identified by covariation analysis. Virus Genes 26, 19-23.
    • (2003) Virus Genes , vol.26 , pp. 19-23
    • Gast, F.U.1
  • 8
    • 0030580111 scopus 로고    scopus 로고
    • Secondary structure probing of potato spindle tuber viroid (PSTVd) and sequence comparison with other small pathogenic RNA replicons provides evidence for central non-canonical base-pairs, large a-rich loops, and a terminal branch
    • Gast, F. U., Kempe, D., Spieker, R. L. & Sänger, H. L. (1996). Secondary structure probing of potato spindle tuber viroid (PSTVd) and sequence comparison with other small pathogenic RNA replicons provides evidence for central non-canonical base-pairs, large A-rich loops, and a terminal branch. J Mol Biol 262, 652-670.
    • (1996) J Mol Biol , vol.262 , pp. 652-670
    • Gast, F.U.1    Kempe, D.2    Spieker, R.L.3    Sänger, H.L.4
  • 9
    • 0027952545 scopus 로고
    • Analysis of the population structure of three phenotypically different PSTVd isolates
    • Góra, A., Candresse, T. & Zagórski, W. (1994). Analysis of the population structure of three phenotypically different PSTVd isolates. Arch Virol 138, 233-245.
    • (1994) Arch Virol , vol.138 , pp. 233-245
    • Góra, A.1    Candresse, T.2    Zagórski, W.3
  • 10
    • 0031024661 scopus 로고    scopus 로고
    • The genetic stability of potato spindle tuber viroid (PSTVd) molecular variants
    • Góra-Sochacka, A., Kierzek, A., Candresse, T. & Zagórski, W. (1997). The genetic stability of potato spindle tuber viroid (PSTVd) molecular variants. RNA 3, 68-74.
    • (1997) RNA , vol.3 , pp. 68-74
    • Góra-Sochacka, A.1    Kierzek, A.2    Candresse, T.3    Zagórski, W.4
  • 11
    • 0017821271 scopus 로고
    • Nucleotide sequence and secondary structure of potato spindle tuber viroid
    • Gross, H. J., Domdey, H., Lossow, C., Jank, P., Raba, M., Alberty, H. & Sänger, H. L. (1978). Nucleotide sequence and secondary structure of potato spindle tuber viroid. Nature 273, 203-208.
    • (1978) Nature , vol.273 , pp. 203-208
    • Gross, H.J.1    Domdey, H.2    Lossow, C.3    Jank, P.4    Raba, M.5    Alberty, H.6    Sänger, H.L.7
  • 13
    • 0029838526 scopus 로고    scopus 로고
    • Stable transfer of intact high molecular weight DNA into plant chromosomes
    • Hamilton, C. M., Frary, A., Lewis, C. & Tanksley, S. D. (1996). Stable transfer of intact high molecular weight DNA into plant chromosomes. Proc Natl Acad Sci U S A 93, 9975-9979.
    • (1996) Proc Natl Acad Sci U S A , vol.93 , pp. 9975-9979
    • Hamilton, C.M.1    Frary, A.2    Lewis, C.3    Tanksley, S.D.4
  • 14
    • 0028229365 scopus 로고
    • Agrobacterium-mediated inoculation of PSTVd cDNAs onto tomato reveals the biological effects of apparently lethal mutations
    • Hammond, R. W. (1994). Agrobacterium-mediated inoculation of PSTVd cDNAs onto tomato reveals the biological effects of apparently lethal mutations. Virology 201, 36-45.
    • (1994) Virology , vol.201 , pp. 36-45
    • Hammond, R.W.1
  • 15
    • 0023212286 scopus 로고
    • Mutational analysis of potato spindle tuber viroid reveals complex relationships between structure and infectivity
    • Hammond, R. W. & Owens, R. A. (1987). Mutational analysis of potato spindle tuber viroid reveals complex relationships between structure and infectivity. Proc Natl Acad Sci U S A 84, 3967-3971.
    • (1987) Proc Natl Acad Sci U S A , vol.84 , pp. 3967-3971
    • Hammond, R.W.1    Owens, R.A.2
  • 16
    • 0342803566 scopus 로고    scopus 로고
    • pGreen: A versatile and flexible binary Ti vector for Agrobacterium-mediated plant transformation
    • Hellens, R. P., Edwards, E. A., Leyland, N. R., Bean, S. & Mullineaux, P. M. (2000). pGreen: a versatile and flexible binary Ti vector for Agrobacterium-mediated plant transformation. Plant Mol Biol 42, 819-832.
    • (2000) Plant Mol Biol , vol.42 , pp. 819-832
    • Hellens, R.P.1    Edwards, E.A.2    Leyland, N.R.3    Bean, S.4    Mullineaux, P.M.5
  • 17
    • 0029997096 scopus 로고    scopus 로고
    • Role of the variable domain in modulating potato spindle tuber viroid replication
    • Hu, Y., Feldstein, P. A., Bottino, P. J. & Owens, R. A. (1996). Role of the variable domain in modulating potato spindle tuber viroid replication. Virology 219, 45-56.
    • (1996) Virology , vol.219 , pp. 45-56
    • Hu, Y.1    Feldstein, P.A.2    Bottino, P.J.3    Owens, R.A.4
  • 18
    • 0030989392 scopus 로고    scopus 로고
    • Destabilization of potato spindle tuber viroid by mutations in the left terminal loop
    • Hu, Y., Feldstein, P. A., Hammond, J., Hammond, R. W., Bottino, P. J. & Owens, R. A. (1997). Destabilization of potato spindle tuber viroid by mutations in the left terminal loop. J Gen Virol 78, 1199-1206.
    • (1997) J Gen Virol , vol.78 , pp. 1199-1206
    • Hu, Y.1    Feldstein, P.A.2    Hammond, J.3    Hammond, R.W.4    Bottino, P.J.5    Owens, R.A.6
  • 19
    • 0022344804 scopus 로고
    • Domains in viroids: Evidence for intermolecular RNA rearrangements and their contribution to viroid evolution
    • Keese, P. & Symons, R. H. (1985). Domains in viroids: evidence for intermolecular RNA rearrangements and their contribution to viroid evolution. Proc Natl Acad Sci U S A 82, 4582-4586.
    • (1985) Proc Natl Acad Sci U S A , vol.82 , pp. 4582-4586
    • Keese, P.1    Symons, R.H.2
  • 20
    • 33744816589 scopus 로고    scopus 로고
    • Transcription of potato spindle tuber viroid by RNA polymerase II starts in the left terminal loop
    • Kolonko, N., Bannach, O., Aschermann, K., Hu, K. H., Moors, M., Schmitz, M., Steger, G. & Riesner, D. (2006). Transcription of potato spindle tuber viroid by RNA polymerase II starts in the left terminal loop. Virology 347, 392-404.
    • (2006) Virology , vol.347 , pp. 392-404
    • Kolonko, N.1    Bannach, O.2    Aschermann, K.3    Hu, K.H.4    Moors, M.5    Schmitz, M.6    Steger, G.7    Riesner, D.8
  • 22
    • 2542418944 scopus 로고    scopus 로고
    • Analysis of thermal stress-mediated PSTVd variation and biolistic inoculation of progeny of viroid 'thermomutants' to tomato and Brassica species
    • Matoušek, J., Orctová, L., Steger, G., Škopek, J., Moors, M., Dědič, P. & Riesner, D. (2004a). Analysis of thermal stress-mediated PSTVd variation and biolistic inoculation of progeny of viroid 'thermomutants' to tomato and Brassica species. Virology 323, 9-23.
    • (2004) Virology , vol.323 , pp. 9-23
    • Matoušek, J.1    Orctová, L.2    Steger, G.3    Škopek, J.4    Moors, M.5    Dědič, P.6    Riesner, D.7
  • 23
    • 7944237804 scopus 로고    scopus 로고
    • Biolistic inoculation of plants with viroid nucleic acids
    • Matoušek, J., Orctová, L., Steger, G. & Riesner, D. (2004b). Biolistic inoculation of plants with viroid nucleic acids. J Virol Methods 122, 153-164.
    • (2004) J Virol Methods , vol.122 , pp. 153-164
    • Matoušek, J.1    Orctová, L.2    Steger, G.3    Riesner, D.4
  • 24
    • 0032870204 scopus 로고    scopus 로고
    • Structural motifs in RNA
    • Moore, P. B. (1999). Structural motifs in RNA. Annu Rev Biochem 68, 287-300.
    • (1999) Annu Rev Biochem , vol.68 , pp. 287-300
    • Moore, P.B.1
  • 25
    • 0025518772 scopus 로고
    • Mutational analysis of viroid pathogenicity: Tomato apical stunt viroid
    • Owens, R. A. (1990). Mutational analysis of viroid pathogenicity: tomato apical stunt viroid. Mol Plant Microbe Interact 3, 374-380.
    • (1990) Mol Plant Microbe Interact , vol.3 , pp. 374-380
    • Owens, R.A.1
  • 26
    • 20044387947 scopus 로고    scopus 로고
    • Mutational analysis does not support the existence of a putative tertiary structural element in the left terminal domain of Potato spindle tuber viroid
    • Owens, R. A. & Thompson, S. M. (2005). Mutational analysis does not support the existence of a putative tertiary structural element in the left terminal domain of Potato spindle tuber viroid. J Gen Virol 86, 1835-1839.
    • (2005) J Gen Virol , vol.86 , pp. 1835-1839
    • Owens, R.A.1    Thompson, S.M.2
  • 27
    • 0026059364 scopus 로고
    • Effects of random mutagenesis upon potato spindle tuber viroid replication and symptom expression
    • Owens, R. A., Thompson, S. M. & Steger, G. (1991). Effects of random mutagenesis upon potato spindle tuber viroid replication and symptom expression. Virology 185, 18-31.
    • (1991) Virology , vol.185 , pp. 18-31
    • Owens, R.A.1    Thompson, S.M.2    Steger, G.3
  • 28
    • 0029058608 scopus 로고
    • Suppression of potato spindle tuber viroid replication and symptom expression by mutations which stabilize the pathogenicity domain
    • Owens, R. A., Chen, W., Hu, Y. & Hsu, Y. H. (1995). Suppression of potato spindle tuber viroid replication and symptom expression by mutations which stabilize the pathogenicity domain. Virology 208, 554-564.
    • (1995) Virology , vol.208 , pp. 554-564
    • Owens, R.A.1    Chen, W.2    Hu, Y.3    Hsu, Y.H.4
  • 29
    • 0030219525 scopus 로고    scopus 로고
    • RNA structural features responsible for potato spindle tuber viroid pathogenicity
    • Owens, R. A., Steger, G., Hu, Y., Fels, A., Hammond, R.W. & Riesner, D. (1996). RNA structural features responsible for potato spindle tuber viroid pathogenicity. Virology 222, 144-158.
    • (1996) Virology , vol.222 , pp. 144-158
    • Owens, R.A.1    Steger, G.2    Hu, Y.3    Fels, A.4    Hammond, R.W.5    Riesner, D.6
  • 30
    • 0037371897 scopus 로고    scopus 로고
    • Identification of neutral mutants surrounding two naturally occurring variants of Potato spindle tuber viroid
    • Owens, R. A., Thompson, S. M. & Kramer, M. (2003). Identification of neutral mutants surrounding two naturally occurring variants of Potato spindle tuber viroid. J Gen Virol 84, 751-756.
    • (2003) J Gen Virol , vol.84 , pp. 751-756
    • Owens, R.A.1    Thompson, S.M.2    Kramer, M.3
  • 31
    • 0037044315 scopus 로고    scopus 로고
    • Isolation and characterization of a family of stable RNA tetraloops with the motif YNMG that participate in tertiary interactions
    • Proctor, D. J., Schaak, J. E., Bevilacqua, J. M., Falzone, C. J. & Bevilacqua, P. C. (2002). Isolation and characterization of a family of stable RNA tetraloops with the motif YNMG that participate in tertiary interactions. Biochemistry 41, 12062-12075.
    • (2002) Biochemistry , vol.41 , pp. 12062-12075
    • Proctor, D.J.1    Schaak, J.E.2    Bevilacqua, J.M.3    Falzone, C.J.4    Bevilacqua, P.C.5
  • 32
    • 20244379991 scopus 로고    scopus 로고
    • Direct role of a viroid RNA motif inmediating directional RNA trafficking across a specific cellular boundary
    • Qi, Y., Pélissier, T., Itaya, A., Hunt, E., Wassenegger, M. & Ding, B. (2004). Direct role of a viroid RNA motif inmediating directional RNA trafficking across a specific cellular boundary. Plant Cell 16, 1741-1752.
    • (2004) Plant Cell , vol.16 , pp. 1741-1752
    • Qi, Y.1    Pélissier, T.2    Itaya, A.3    Hunt, E.4    Wassenegger, M.5    Ding, B.6
  • 33
    • 0001668440 scopus 로고
    • Involvement of nuclear DNA-dependent RNA polymerases in potato spindle tuber viroid replication: A reevaluation
    • Schindler, I.-M. & Mühlbach, H.-P. (1992). Involvement of nuclear DNA-dependent RNA polymerases in potato spindle tuber viroid replication: a reevaluation. Plant Sci 84, 221-229.
    • (1992) Plant Sci , vol.84 , pp. 221-229
    • Schindler, I.-M.1    Mühlbach, H.-P.2
  • 34
    • 0001510299 scopus 로고
    • Correlation between structure and pathogenicity of potato spindle tuber viroid (PSTV)
    • Schnölzer, M., Haas, B., Raam, K., Hofmann, H. & Sänger, H. L. (1985). Correlation between structure and pathogenicity of potato spindle tuber viroid (PSTV). EMBO J 4, 2181-2190.
    • (1985) EMBO J , vol.4 , pp. 2181-2190
    • Schnölzer, M.1    Haas, B.2    Raam, K.3    Hofmann, H.4    Sänger, H.L.5
  • 35
    • 0037324320 scopus 로고    scopus 로고
    • A mini-RNA containing the tetraloop, wobble-pair and loop e motifs of the central conserved region of potato spindle tuber viroid is processed into a minicircle
    • Schrader, O., Baumstark, T. & Riesner, D. (2003). A mini-RNA containing the tetraloop, wobble-pair and loop E motifs of the central conserved region of potato spindle tuber viroid is processed into a minicircle. Nucleic Acids Res 31, 988-998.
    • (2003) Nucleic Acids Res , vol.31 , pp. 988-998
    • Schrader, O.1    Baumstark, T.2    Riesner, D.3
  • 37
    • 0021532353 scopus 로고
    • Conformational transitions in viroids and virusoids: Comparison of results from energy minimization algorithm and from experimental data
    • Steger, G., Hofmann, H., Förtsch, J., Gross, H. J., Randles, J. W., Sänger, H. L. & Riesner, D. (1984). Conformational transitions in viroids and virusoids: comparison of results from energy minimization algorithm and from experimental data. J Biomol Struct Dyn 2, 543-571.
    • (1984) J Biomol Struct Dyn , vol.2 , pp. 543-571
    • Steger, G.1    Hofmann, H.2    Förtsch, J.3    Gross, H.J.4    Randles, J.W.5    Sänger, H.L.6    Riesner, D.7
  • 39
    • 33846783260 scopus 로고    scopus 로고
    • Evidence for the existence of the loop e motif of Potato spindle tuber viroid in vivo
    • Wang, Y., Zhong, X., Itaya, A. & Ding, B. (2007). Evidence for the existence of the loop E motif of Potato spindle tuber viroid in vivo. J Virol 81, 2074-2077.
    • (2007) J Virol , vol.81 , pp. 2074-2077
    • Wang, Y.1    Zhong, X.2    Itaya, A.3    Ding, B.4
  • 41
    • 34548068007 scopus 로고    scopus 로고
    • Tertiary structure and function of an RNA motif required for plant vascular entry to initiate systemic trafficking
    • Zhong, X., Tao, X., Stombaugh, J., Leontis, N. & Ding, B. (2007). Tertiary structure and function of an RNA motif required for plant vascular entry to initiate systemic trafficking. EMBO J 26, 3836-3846.
    • (2007) EMBO J , vol.26 , pp. 3836-3846
    • Zhong, X.1    Tao, X.2    Stombaugh, J.3    Leontis, N.4    Ding, B.5
  • 42
    • 43549096950 scopus 로고    scopus 로고
    • A genomic map of viroid RNA motifs critical for replication and systemic trafficking
    • Zhong, X., Archual, A. J., Amin, A. A. & Ding, B. (2008). A genomic map of viroid RNA motifs critical for replication and systemic trafficking. Plant Cell 20, 35-47.
    • (2008) Plant Cell , vol.20 , pp. 35-47
    • Zhong, X.1    Archual, A.J.2    Amin, A.A.3    Ding, B.4
  • 43
    • 0042121256 scopus 로고    scopus 로고
    • MFOLD web server for nucleic acid folding and hybridization prediction
    • Zuker, M. (2003). MFOLD web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31, 3406-3415.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1


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