-
3
-
-
0037376665
-
Nicotinamide adenine dinucleotide, a metabolic regulator of transcription, longevity and disease
-
Lin SJ, Guarente L, (2003) Nicotinamide adenine dinucleotide, a metabolic regulator of transcription, longevity and disease. Curr Opin Cell Biol 15: 241-246.
-
(2003)
Curr Opin Cell Biol
, vol.15
, pp. 241-246
-
-
Lin, S.J.1
Guarente, L.2
-
4
-
-
84872491002
-
Targeting NAD biosynthesis in bacterial pathogens
-
Sorci L, Pan Y, Eyobo Y, Rodionova I, Huang N, et al. (2009) Targeting NAD biosynthesis in bacterial pathogens. Structure-based development of inhibitors of nicotinate mononucleotide adenylyltransferase NadD.
-
(2009)
Structure-Based Development of Inhibitors of Nicotinate Mononucleotide Adenylyltransferase NadD
-
-
Sorci, L.1
Pan, Y.2
Eyobo, Y.3
Rodionova, I.4
Huang, N.5
-
5
-
-
33846922557
-
A subsystems-based approach to the identification of drug targets in bacterial pathogens
-
Osterman AL, Begley TP, (2007) A subsystems-based approach to the identification of drug targets in bacterial pathogens. Prog Drug Res 64: 131, 133-170.
-
(2007)
Prog Drug Res
, vol.64
-
-
Osterman, A.L.1
Begley, T.P.2
-
6
-
-
50349099789
-
Biosynthesis and recycling of nicotinamide cofactors in mycobacterium tuberculosis. An essential role for NAD in nonreplicating bacilli
-
Boshoff HI, Xu X, Tahlan K, Dowd CS, Pethe K, et al. (2008) Biosynthesis and recycling of nicotinamide cofactors in mycobacterium tuberculosis. An essential role for NAD in nonreplicating bacilli. J Biol Chem 283: 19329-19341.
-
(2008)
J Biol Chem
, vol.283
, pp. 19329-19341
-
-
Boshoff, H.I.1
Xu, X.2
Tahlan, K.3
Dowd, C.S.4
Pethe, K.5
-
7
-
-
61849150037
-
Virtual screening to identify lead inhibitors for bacterial NAD synthetase (NADs)
-
Moro WB, Yang Z, Kane TA, Brouillette CG, Brouillette WJ, (2009) Virtual screening to identify lead inhibitors for bacterial NAD synthetase (NADs). Bioorg Med Chem Lett 19: 2001-2005.
-
(2009)
Bioorg Med Chem Lett
, vol.19
, pp. 2001-2005
-
-
Moro, W.B.1
Yang, Z.2
Kane, T.A.3
Brouillette, C.G.4
Brouillette, W.J.5
-
8
-
-
34250161577
-
Antibacterial nicotinamide adenine dinucleotide synthetase inhibitors: amide- and ether-linked tethered dimers with alpha-amino acid end groups
-
Velu SE, Mou L, Luan CH, Yang ZW, DeLucas LJ, et al. (2007) Antibacterial nicotinamide adenine dinucleotide synthetase inhibitors: amide- and ether-linked tethered dimers with alpha-amino acid end groups. J Med Chem 50: 2612-2621.
-
(2007)
J Med Chem
, vol.50
, pp. 2612-2621
-
-
Velu, S.E.1
Mou, L.2
Luan, C.H.3
Yang, Z.W.4
DeLucas, L.J.5
-
9
-
-
0036947230
-
Ribosylnicotinamide kinase domain of NadR protein: identification and implications in NAD biosynthesis
-
Kurnasov OV, Polanuyer BM, Ananta S, Sloutsky R, Tam A, et al. (2002) Ribosylnicotinamide kinase domain of NadR protein: identification and implications in NAD biosynthesis. J Bacteriol 184: 6906-6917.
-
(2002)
J Bacteriol
, vol.184
, pp. 6906-6917
-
-
Kurnasov, O.V.1
Polanuyer, B.M.2
Ananta, S.3
Sloutsky, R.4
Tam, A.5
-
10
-
-
78649827278
-
Genomics-driven reconstruction of acinetobacter NAD metabolism: insights for antibacterial target selection
-
Sorci L, Blaby I, De Ingeniis J, Gerdes S, Raffaelli N, et al. (2010) Genomics-driven reconstruction of acinetobacter NAD metabolism: insights for antibacterial target selection. J Biol Chem 285: 39490-39499.
-
(2010)
J Biol Chem
, vol.285
, pp. 39490-39499
-
-
Sorci, L.1
Blaby, I.2
de Ingeniis, J.3
Gerdes, S.4
Raffaelli, N.5
-
11
-
-
62549094038
-
Nicotinamide mononucleotide synthetase is the key enzyme for an alternative route of NAD biosynthesis in Francisella tularensis
-
Sorci L, Martynowski D, Rodionov DA, Eyobo Y, Zogaj X, et al. (2009) Nicotinamide mononucleotide synthetase is the key enzyme for an alternative route of NAD biosynthesis in Francisella tularensis. Proc Natl Acad Sci U S A 106: 3083-3088.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 3083-3088
-
-
Sorci, L.1
Martynowski, D.2
Rodionov, D.A.3
Eyobo, Y.4
Zogaj, X.5
-
12
-
-
38949157741
-
Bifunctional NMN adenylyltransferase/ADP-ribose pyrophosphatase: structure and function in bacterial NAD metabolism
-
Huang N, Sorci L, Zhang X, Brautigam CA, Li X, et al. (2008) Bifunctional NMN adenylyltransferase/ADP-ribose pyrophosphatase: structure and function in bacterial NAD metabolism. Structure 16: 196-209.
-
(2008)
Structure
, vol.16
, pp. 196-209
-
-
Huang, N.1
Sorci, L.2
Zhang, X.3
Brautigam, C.A.4
Li, X.5
-
13
-
-
2342550554
-
Discoveries of nicotinamide riboside as a nutrient and conserved NRK genes establish a Preiss-Handler independent route to NAD+ in fungi and humans
-
Bieganowski P, Brenner C, (2004) Discoveries of nicotinamide riboside as a nutrient and conserved NRK genes establish a Preiss-Handler independent route to NAD+ in fungi and humans. Cell 117: 495-502.
-
(2004)
Cell
, vol.117
, pp. 495-502
-
-
Bieganowski, P.1
Brenner, C.2
-
14
-
-
0030024963
-
The crystal structure of GMP synthetase reveals a novel catalytic triad and is a structural paradigm for two enzyme families
-
Tesmer JJ, Klem TJ, Deras ML, Davisson VJ, Smith JL, (1996) The crystal structure of GMP synthetase reveals a novel catalytic triad and is a structural paradigm for two enzyme families. Nat Struct Biol 3: 74-86.
-
(1996)
Nat Struct Biol
, vol.3
, pp. 74-86
-
-
Tesmer, J.J.1
Klem, T.J.2
Deras, M.L.3
Davisson, V.J.4
Smith, J.L.5
-
15
-
-
84855290528
-
Divergence and convergence in enzyme evolution
-
Galperin MY, Koonin EV, (2012) Divergence and convergence in enzyme evolution. J Biol Chem 287: 21-28.
-
(2012)
J Biol Chem
, vol.287
, pp. 21-28
-
-
Galperin, M.Y.1
Koonin, E.V.2
-
16
-
-
0031721044
-
Salmonella typhimurium nit is nadE: defective nitrogen utilization and ammonia-dependent NAD synthetase
-
Schneider BL, Reitzer LJ, (1998) Salmonella typhimurium nit is nadE: defective nitrogen utilization and ammonia-dependent NAD synthetase. J Bacteriol 180: 4739-4741.
-
(1998)
J Bacteriol
, vol.180
, pp. 4739-4741
-
-
Schneider, B.L.1
Reitzer, L.J.2
-
17
-
-
0036909261
-
Catalysis in the nitrilase superfamily
-
Brenner C, (2002) Catalysis in the nitrilase superfamily. Curr Opin Struct Biol 12: 775-782.
-
(2002)
Curr Opin Struct Biol
, vol.12
, pp. 775-782
-
-
Brenner, C.1
-
18
-
-
0042377362
-
Eukaryotic NAD+ synthetase Qns1 contains an essential, obligate intramolecular thiol glutamine amidotransferase domain related to nitrilase
-
Bieganowski P, Pace HC, Brenner C, (2003) Eukaryotic NAD+ synthetase Qns1 contains an essential, obligate intramolecular thiol glutamine amidotransferase domain related to nitrilase. J Biol Chem 278: 33049-33055.
-
(2003)
J Biol Chem
, vol.278
, pp. 33049-33055
-
-
Bieganowski, P.1
Pace, H.C.2
Brenner, C.3
-
19
-
-
0043198091
-
Saccharomyces cerevisiae QNS1 codes for NAD(+) synthetase that is functionally conserved in mammals
-
Suda Y, Tachikawa H, Yokota A, Nakanishi H, Yamashita N, et al. (2003) Saccharomyces cerevisiae QNS1 codes for NAD(+) synthetase that is functionally conserved in mammals. Yeast 20: 995-1005.
-
(2003)
Yeast
, vol.20
, pp. 995-1005
-
-
Suda, Y.1
Tachikawa, H.2
Yokota, A.3
Nakanishi, H.4
Yamashita, N.5
-
20
-
-
0037500302
-
Molecular identification of human glutamine- and ammonia-dependent NAD synthetases. Carbon-nitrogen hydrolase domain confers glutamine dependency
-
Hara N, Yamada K, Terashima M, Osago H, Shimoyama M, et al. (2003) Molecular identification of human glutamine- and ammonia-dependent NAD synthetases. Carbon-nitrogen hydrolase domain confers glutamine dependency. J Biol Chem 278: 10914-10921.
-
(2003)
J Biol Chem
, vol.278
, pp. 10914-10921
-
-
Hara, N.1
Yamada, K.2
Terashima, M.3
Osago, H.4
Shimoyama, M.5
-
21
-
-
33646012932
-
Comparative genomics of NAD biosynthesis in cyanobacteria
-
Gerdes SY, Kurnasov OV, Shatalin K, Polanuyer B, Sloutsky R, et al. (2006) Comparative genomics of NAD biosynthesis in cyanobacteria. J Bacteriol 188: 3012-3023.
-
(2006)
J Bacteriol
, vol.188
, pp. 3012-3023
-
-
Gerdes, S.Y.1
Kurnasov, O.V.2
Shatalin, K.3
Polanuyer, B.4
Sloutsky, R.5
-
22
-
-
64049098303
-
Regulation of active site coupling in glutamine-dependent NAD(+) synthetase
-
LaRonde-LeBlanc N, Resto M, Gerratana B, (2009) Regulation of active site coupling in glutamine-dependent NAD(+) synthetase. Nat Struct Mol Biol 16: 421-429.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 421-429
-
-
LaRonde-LeBlanc, N.1
Resto, M.2
Gerratana, B.3
-
23
-
-
70249112557
-
An ancestral glutamine-dependent NAD(+) synthetase revealed by poor kinetic synergism
-
Resto M, Yaffe J, Gerratana B, (2009) An ancestral glutamine-dependent NAD(+) synthetase revealed by poor kinetic synergism. Biochim Biophys Acta 1794: 1648-1653.
-
(2009)
Biochim Biophys Acta
, vol.1794
, pp. 1648-1653
-
-
Resto, M.1
Yaffe, J.2
Gerratana, B.3
-
24
-
-
84859456944
-
Regulation of the intersubunit ammonia tunnel in Mycobacterium tuberculosis glutamine-dependent NAD+ synthetase
-
Chuenchor W, Doukov TI, Resto M, Chang A, Gerratana B, (2012) Regulation of the intersubunit ammonia tunnel in Mycobacterium tuberculosis glutamine-dependent NAD+ synthetase. Biochem J 443: 417-426.
-
(2012)
Biochem J
, vol.443
, pp. 417-426
-
-
Chuenchor, W.1
Doukov, T.I.2
Resto, M.3
Chang, A.4
Gerratana, B.5
-
25
-
-
0041876231
-
The reported human NADsyn2 is ammonia-dependent NAD synthetase from a pseudomonad
-
Bieganowski P, Brenner C, (2003) The reported human NADsyn2 is ammonia-dependent NAD synthetase from a pseudomonad. J Biol Chem 278: 33056-33059.
-
(2003)
J Biol Chem
, vol.278
, pp. 33056-33059
-
-
Bieganowski, P.1
Brenner, C.2
-
26
-
-
0028934050
-
The outB gene of Bacillus subtilis codes for NAD synthetase
-
Nessi C, Albertini AM, Speranza ML, Galizzi A, (1995) The outB gene of Bacillus subtilis codes for NAD synthetase. J Biol Chem 270: 6181-6185.
-
(1995)
J Biol Chem
, vol.270
, pp. 6181-6185
-
-
Nessi, C.1
Albertini, A.M.2
Speranza, M.L.3
Galizzi, A.4
-
27
-
-
0346655241
-
Identification of NAD+ synthetase from Streptococcus sobrinus as a B-cell-stimulatory protein
-
Veiga-Malta I, Duarte M, Dinis M, Madureira P, Ferreira P, et al. (2004) Identification of NAD+ synthetase from Streptococcus sobrinus as a B-cell-stimulatory protein. J Bacteriol 186: 419-426.
-
(2004)
J Bacteriol
, vol.186
, pp. 419-426
-
-
Veiga-Malta, I.1
Duarte, M.2
Dinis, M.3
Madureira, P.4
Ferreira, P.5
-
28
-
-
0028238982
-
The Escherichia coli efg gene and the Rhodobacter capsulatus adgA gene code for NH3-dependent NAD synthetase
-
Willison JC, Tissot G, (1994) The Escherichia coli efg gene and the Rhodobacter capsulatus adgA gene code for NH3-dependent NAD synthetase. J Bacteriol 176: 3400-3402.
-
(1994)
J Bacteriol
, vol.176
, pp. 3400-3402
-
-
Willison, J.C.1
Tissot, G.2
-
29
-
-
1842848056
-
Stable ammonia-specific NAD synthetase from Bacillus stearothermophilus: purification, characterization, gene cloning, and applications
-
Yamaguchi F, Koga S, Yoshioka I, Takahashi M, Sakuraba H, et al. (2002) Stable ammonia-specific NAD synthetase from Bacillus stearothermophilus: purification, characterization, gene cloning, and applications. Biosci Biotechnol Biochem 66: 2052-2059.
-
(2002)
Biosci Biotechnol Biochem
, vol.66
, pp. 2052-2059
-
-
Yamaguchi, F.1
Koga, S.2
Yoshioka, I.3
Takahashi, M.4
Sakuraba, H.5
-
30
-
-
0034984827
-
Stabilization of active-site loops in NH3-dependent NAD+ synthetase from Bacillus subtilis
-
Devedjiev Y, Symersky J, Singh R, Jedrzejas M, Brouillette C, et al. (2001) Stabilization of active-site loops in NH3-dependent NAD+ synthetase from Bacillus subtilis. Acta Crystallogr D Biol Crystallogr 57: 806-812.
-
(2001)
Acta Crystallogr D Biol Crystallogr
, vol.57
, pp. 806-812
-
-
Devedjiev, Y.1
Symersky, J.2
Singh, R.3
Jedrzejas, M.4
Brouillette, C.5
-
31
-
-
17644400173
-
Structures of Escherichia coli NAD synthetase with substrates and products reveal mechanistic rearrangements
-
Jauch R, Humm A, Huber R, Wahl MC, (2005) Structures of Escherichia coli NAD synthetase with substrates and products reveal mechanistic rearrangements. J Biol Chem 280: 15131-15140.
-
(2005)
J Biol Chem
, vol.280
, pp. 15131-15140
-
-
Jauch, R.1
Humm, A.2
Huber, R.3
Wahl, M.C.4
-
32
-
-
13944249564
-
Crystal structure of NH3-dependent NAD+ synthetase from Helicobacter pylori
-
Kang GB, Kim YS, Im YJ, Rho SH, Lee JH, et al. (2005) Crystal structure of NH3-dependent NAD+ synthetase from Helicobacter pylori. Proteins 58: 985-988.
-
(2005)
Proteins
, vol.58
, pp. 985-988
-
-
Kang, G.B.1
Kim, Y.S.2
Im, Y.J.3
Rho, S.H.4
Lee, J.H.5
-
33
-
-
34447641825
-
Structural adaptation of an interacting non-native C-terminal helical extension revealed in the crystal structure of NAD+ synthetase from Bacillus anthracis
-
McDonald HM, Pruett PS, Deivanayagam C, Protasevich, II, Carson WM, et al. (2007) Structural adaptation of an interacting non-native C-terminal helical extension revealed in the crystal structure of NAD+ synthetase from Bacillus anthracis. Acta Crystallogr D Biol Crystallogr 63: 891-905.
-
(2007)
Acta Crystallogr D Biol Crystallogr
, vol.63
, pp. 891-905
-
-
McDonald, H.M.1
Pruett, P.S.2
Deivanayagam, C.3
Protasevich II4
Carson, W.M.5
-
34
-
-
0032531011
-
A novel deamido-NAD+-binding site revealed by the trapped NAD-adenylate intermediate in the NAD+ synthetase structure
-
Rizzi M, Bolognesi M, Coda A, (1998) A novel deamido-NAD+-binding site revealed by the trapped NAD-adenylate intermediate in the NAD+ synthetase structure. Structure 6: 1129-1140.
-
(1998)
Structure
, vol.6
, pp. 1129-1140
-
-
Rizzi, M.1
Bolognesi, M.2
Coda, A.3
-
35
-
-
0035997123
-
NH3-dependent NAD+ synthetase from Bacillus subtilis at 1 A resolution
-
Symersky J, Devedjiev Y, Moore K, Brouillette C, DeLucas L, (2002) NH3-dependent NAD+ synthetase from Bacillus subtilis at 1 A resolution. Acta Crystallogr D Biol Crystallogr 58: 1138-1146.
-
(2002)
Acta Crystallogr D Biol Crystallogr
, vol.58
, pp. 1138-1146
-
-
Symersky, J.1
Devedjiev, Y.2
Moore, K.3
Brouillette, C.4
DeLucas, L.5
-
36
-
-
0017194604
-
Mutant strains (nit) of Salmonella typhimurium with a pleiotropic defect in nitrogen metabolism
-
Broach J, Neumann C, Kustu S, (1976) Mutant strains (nit) of Salmonella typhimurium with a pleiotropic defect in nitrogen metabolism. J Bacteriol 128: 86-98.
-
(1976)
J Bacteriol
, vol.128
, pp. 86-98
-
-
Broach, J.1
Neumann, C.2
Kustu, S.3
-
37
-
-
0028853811
-
Domain organization and a protease-sensitive loop in eukaryotic ornithine decarboxylase
-
Osterman AL, Lueder DV, Quick M, Myers D, Canagarajah BJ, et al. (1995) Domain organization and a protease-sensitive loop in eukaryotic ornithine decarboxylase. Biochemistry 34: 13431-13436.
-
(1995)
Biochemistry
, vol.34
, pp. 13431-13436
-
-
Osterman, A.L.1
Lueder, D.V.2
Quick, M.3
Myers, D.4
Canagarajah, B.J.5
-
38
-
-
0035180870
-
Archaeal shikimate kinase, a new member of the GHMP-kinase family
-
Daugherty M, Vonstein V, Overbeek R, Osterman A, (2001) Archaeal shikimate kinase, a new member of the GHMP-kinase family. J Bacteriol 183: 292-300.
-
(2001)
J Bacteriol
, vol.183
, pp. 292-300
-
-
Daugherty, M.1
Vonstein, V.2
Overbeek, R.3
Osterman, A.4
-
39
-
-
25644458211
-
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
-
Overbeek R, Begley T, Butler RM, Choudhuri JV, Chuang H-Y, et al. (2005) The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic acids research 33: 5691-5702.
-
(2005)
Nucleic Acids Research
, vol.33
, pp. 5691-5702
-
-
Overbeek, R.1
Begley, T.2
Butler, R.M.3
Choudhuri, J.V.4
Chuang, H.-Y.5
-
40
-
-
75549088819
-
MicrobesOnline: an integrated portal for comparative and functional genomics
-
Dehal PS, Joachimiak MP, Price MN, Bates JT, Baumohl JK, et al. (2010) MicrobesOnline: an integrated portal for comparative and functional genomics. Nucleic acids research 38: D396-400.
-
(2010)
Nucleic Acids Research
, vol.38
-
-
Dehal, P.S.1
Joachimiak, M.P.2
Price, M.N.3
Bates, J.T.4
Baumohl, J.K.5
-
41
-
-
84872487803
-
-
Oracle Express (XE) website, Available
-
Oracle Express (XE) website. Accessed Available:http://www.oracle.com/technetwork/products/express-edition/downloads/index.html. 23 May (2012)
-
(2012)
-
-
-
42
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC, (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic acids research 32: 1792-1797.
-
(2004)
Nucleic Acids Research
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
43
-
-
77949718257
-
FastTree 2-approximately maximum-likelihood trees for large alignments
-
Price MN, Dehal PS, Arkin AP, (2010) FastTree 2-approximately maximum-likelihood trees for large alignments. PLoS One 5: e9490.
-
(2010)
PLoS One
, vol.5
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
44
-
-
50249100595
-
A rapid bootstrap algorithm for the RAxML Web servers
-
Stamatakis A, Hoover P, Rougemont J, (2008) A rapid bootstrap algorithm for the RAxML Web servers. Syst Biol 57: 758-771.
-
(2008)
Syst Biol
, vol.57
, pp. 758-771
-
-
Stamatakis, A.1
Hoover, P.2
Rougemont, J.3
-
45
-
-
38649092410
-
Dendroscope: An interactive viewer for large phylogenetic trees
-
Huson DH, Richter DC, Rausch C, Dezulian T, Franz M, et al. (2007) Dendroscope: An interactive viewer for large phylogenetic trees. BMC Bioinformatics 8: 460.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 460
-
-
Huson, D.H.1
Richter, D.C.2
Rausch, C.3
Dezulian, T.4
Franz, M.5
-
47
-
-
43749107283
-
Comparative protein structure modeling using Modeller
-
Chapter 5: Unit 5
-
Eswar N, Webb B, Marti-Renom MA, Madhusudhan MS, Eramian D, et al. (2006) Comparative protein structure modeling using Modeller. Curr Protoc Bioinformatics Chapter 5: Unit 5 6.
-
(2006)
Curr Protoc Bioinformatics
, pp. 6
-
-
Eswar, N.1
Webb, B.2
Marti-Renom, M.A.3
Madhusudhan, M.S.4
Eramian, D.5
-
48
-
-
4444221565
-
UCSF Chimera-a visualization system for exploratory research and analysis
-
Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, et al. (2004) UCSF Chimera-a visualization system for exploratory research and analysis. J Comput Chem 25: 1605-1612.
-
(2004)
J Comput Chem
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
-
49
-
-
84906292166
-
Genomics and Enzymology of NAD Biosynthesis
-
In: Lew M, Hung-Wen L, editors, editors
-
Sorci L, Kurnasov O, Rodionov DA, Osterman AL, (2010) Genomics and Enzymology of NAD Biosynthesis. In: Lew M, Hung-Wen L, editors. pp. 213-257 editors. Comprehensive Natural Products II. Oxford: Elsevier.
-
(2010)
, pp. 213-257
-
-
Sorci, L.1
Kurnasov, O.2
Rodionov, D.A.3
Osterman, A.L.4
-
50
-
-
33749347331
-
NAD+ utilization in Pasteurellaceae: simplification of a complex pathway
-
Gerlach G, Reidl J, (2006) NAD+ utilization in Pasteurellaceae: simplification of a complex pathway. J Bacteriol 188: 6719-6727.
-
(2006)
J Bacteriol
, vol.188
, pp. 6719-6727
-
-
Gerlach, G.1
Reidl, J.2
-
51
-
-
0037398732
-
Missing genes in metabolic pathways: a comparative genomics approach
-
Osterman A, Overbeek R, (2003) Missing genes in metabolic pathways: a comparative genomics approach. Curr Opin Chem Biol 7: 238-251.
-
(2003)
Curr Opin Chem Biol
, vol.7
, pp. 238-251
-
-
Osterman, A.1
Overbeek, R.2
-
52
-
-
0022272456
-
NAD synthetase
-
Zalkin H, (1985) NAD synthetase. Methods Enzymol 113: 297-302.
-
(1985)
Methods Enzymol
, vol.113
, pp. 297-302
-
-
Zalkin, H.1
-
53
-
-
0029789527
-
Crystal structure of NH3-dependent NAD+ synthetase from Bacillus subtilis
-
Rizzi M, Nessi C, Mattevi A, Coda A, Bolognesi M, et al. (1996) Crystal structure of NH3-dependent NAD+ synthetase from Bacillus subtilis. Embo J 15: 5125-5134.
-
(1996)
Embo J
, vol.15
, pp. 5125-5134
-
-
Rizzi, M.1
Nessi, C.2
Mattevi, A.3
Coda, A.4
Bolognesi, M.5
-
54
-
-
3242891674
-
SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins
-
Kalinina OV, Novichkov PS, Mironov AA, Gelfand MS, Rakhmaninova AB, (2004) SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins. Nucleic Acids Res 32: W424-428.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Kalinina, O.V.1
Novichkov, P.S.2
Mironov, A.A.3
Gelfand, M.S.4
Rakhmaninova, A.B.5
-
55
-
-
84855259681
-
The FGGY carbohydrate kinase family: insights into the evolution of functional specificities
-
Zhang Y, Zagnitko O, Rodionova I, Osterman A, Godzik A, (2011) The FGGY carbohydrate kinase family: insights into the evolution of functional specificities. PLoS Comput Biol 7: e1002318.
-
(2011)
PLoS Comput Biol
, vol.7
-
-
Zhang, Y.1
Zagnitko, O.2
Rodionova, I.3
Osterman, A.4
Godzik, A.5
-
56
-
-
77955103653
-
Systematic analysis of short internal indels and their impact on protein folding
-
Kim R, Guo J-t, (2010) Systematic analysis of short internal indels and their impact on protein folding. BMC structural biology 10: 24.
-
(2010)
BMC Structural Biology
, vol.10
, pp. 24
-
-
Kim, R.1
Guo, J.-t.2
-
57
-
-
34548767667
-
Interaction-site prediction for protein complexes: a critical assessment
-
Zhou H-X, Qin S, (2007) Interaction-site prediction for protein complexes: a critical assessment. Bioinformatics (Oxford, England) 23: 2203-2209.
-
(2007)
Bioinformatics (Oxford, England)
, vol.23
, pp. 2203-2209
-
-
Zhou, H.-X.1
Qin, S.2
-
58
-
-
0036046771
-
Evolution of gene fusions: horizontal transfer versus independent events
-
Yanai I, Wolf YI, Koonin EV, (2002) Evolution of gene fusions: horizontal transfer versus independent events. Genome biology 3: research0024.
-
(2002)
Genome Biology
, vol.3
-
-
Yanai, I.1
Wolf, Y.I.2
Koonin, E.V.3
-
59
-
-
77955039174
-
The origin and early evolution of eukaryotes in the light of phylogenomics
-
Koonin EV, (2010) The origin and early evolution of eukaryotes in the light of phylogenomics. Genome biology 11: 209.
-
(2010)
Genome Biology
, vol.11
, pp. 209
-
-
Koonin, E.V.1
-
60
-
-
33845945135
-
Glutamine-dependent NAD+ synthetase. How a two-domain, three-substrate enzyme avoids waste
-
Wojcik M, Seidle HF, Bieganowski P, Brenner C, (2006) Glutamine-dependent NAD+ synthetase. How a two-domain, three-substrate enzyme avoids waste. J Biol Chem 281: 33395-33402.
-
(2006)
J Biol Chem
, vol.281
, pp. 33395-33402
-
-
Wojcik, M.1
Seidle, H.F.2
Bieganowski, P.3
Brenner, C.4
|