메뉴 건너뛰기




Volumn 35, Issue 7, 2011, Pages 706-721

Entropy-based information gain approaches to detect and to characterize gene-gene and gene-environment interactions/correlations of complex diseases

Author keywords

Entropy; Gene gene and gene environment interactions; Interaction information; Mutual information; Total correlation information

Indexed keywords

ARTICLE; BLADDER CANCER; CANCER SUSCEPTIBILITY; CHI SQUARE TEST; CONTROLLED STUDY; ENTROPY; ENVIRONMENTAL FACTOR; GENE INTERACTION; GENETIC CORRELATION; GENOME; HUMAN; POWER ANALYSIS; POWER OF A TEST; SAMPLE SIZE; SINGLE NUCLEOTIDE POLYMORPHISM; SMOKING HABIT; STATISTICAL ANALYSIS;

EID: 80054755102     PISSN: 07410395     EISSN: 10982272     Source Type: Journal    
DOI: 10.1002/gepi.20621     Document Type: Article
Times cited : (59)

References (37)
  • 1
    • 33646187199 scopus 로고    scopus 로고
    • Concordance of multiple analytical approaches demonstrates a complex relationship between DNA repair gene SNPs, smoking and bladder cancer susceptibility
    • Andrew AS, Nelson HH, Kelsey KT, Moore JH, Meng AC, Casella DP, Tosteson TD, Schned AR, Karagas MR. 2006. Concordance of multiple analytical approaches demonstrates a complex relationship between DNA repair gene SNPs, smoking and bladder cancer susceptibility. Carcinogenesis 27:1030-1037.
    • (2006) Carcinogenesis , vol.27 , pp. 1030-1037
    • Andrew, A.S.1    Nelson, H.H.2    Kelsey, K.T.3    Moore, J.H.4    Meng, A.C.5    Casella, D.P.6    Tosteson, T.D.7    Schned, A.R.8    Karagas, M.R.9
  • 2
    • 0036706093 scopus 로고    scopus 로고
    • William Bateson: a biologist ahead of his time
    • Bateson B. 2002. William Bateson: a biologist ahead of his time. Am J Hum Genet 81:49-58.
    • (2002) Am J Hum Genet , vol.81 , pp. 49-58
    • Bateson, B.1
  • 7
    • 84971185409 scopus 로고
    • The correlations between relatives on the supposition of Mendelian inheritance
    • Fisher RA. 1918. The correlations between relatives on the supposition of Mendelian inheritance. Trans R Soc Edinb 52:399-433.
    • (1918) Trans R Soc Edinb , vol.52 , pp. 399-433
    • Fisher, R.A.1
  • 8
    • 0030333453 scopus 로고    scopus 로고
    • Who's afraid of epistasis
    • Frankel WN, Schork NJ. 1996. Who's afraid of epistasis. Nat Genet 14:371-373.
    • (1996) Nat Genet , vol.14 , pp. 371-373
    • Frankel, W.N.1    Schork, N.J.2
  • 9
    • 0037433052 scopus 로고    scopus 로고
    • Multifactor dimensionality reduction software for detecting gene-gene and gene-environment interactions
    • Hahn LW, Ritchie MD, Moore JH. 2003. Multifactor dimensionality reduction software for detecting gene-gene and gene-environment interactions. Bioinformatics 19:376-382.
    • (2003) Bioinformatics , vol.19 , pp. 376-382
    • Hahn, L.W.1    Ritchie, M.D.2    Moore, J.H.3
  • 10
    • 0019042755 scopus 로고
    • Multiple mutual informations and multiple interactions in frequency data
    • Han TS. 1980. Multiple mutual informations and multiple interactions in frequency data. Inf Control 46:26-45.
    • (1980) Inf Control , vol.46 , pp. 26-45
    • Han, T.S.1
  • 11
    • 80054767884 scopus 로고    scopus 로고
    • Machine learning based on attribute interactions. PhD thesis.
    • Jakulin A. 2005. Machine learning based on attribute interactions. PhD thesis.
    • (2005)
    • Jakulin, A.1
  • 12
  • 15
    • 37349001288 scopus 로고    scopus 로고
    • An entropy-based approach for testing genetic epistasis underlying complex diseases
    • Kang G, Yue W, Zhang J, Cui Y, Zuo Y, Zhang D. 2008. An entropy-based approach for testing genetic epistasis underlying complex diseases. J Theor Biol 250:362-374.
    • (2008) J Theor Biol , vol.250 , pp. 362-374
    • Kang, G.1    Yue, W.2    Zhang, J.3    Cui, Y.4    Zuo, Y.5    Zhang, D.6
  • 17
    • 34250821108 scopus 로고    scopus 로고
    • A generalized combinatorial approach for detecting gene-by-gene and gene-by-environment interactions with application to nicotine dependence
    • Lou XY, Chen GB, Yan L, Ma JZ, Zhu J, Elston RC, Li MD. 2007. A generalized combinatorial approach for detecting gene-by-gene and gene-by-environment interactions with application to nicotine dependence. Am J Hum Genet 80:1125-1137.
    • (2007) Am J Hum Genet , vol.80 , pp. 1125-1137
    • Lou, X.Y.1    Chen, G.B.2    Yan, L.3    Ma, J.Z.4    Zhu, J.5    Elston, R.C.6    Li, M.D.7
  • 18
  • 20
    • 32044462757 scopus 로고    scopus 로고
    • A novel method to identify gene-gene effects in nuclear families: the MDR-PDT
    • Martin ER, Ritchie MD, Hahn L, Kang S, Moore JH. 2006. A novel method to identify gene-gene effects in nuclear families: the MDR-PDT. Genet Epidemiol 30:111-123.
    • (2006) Genet Epidemiol , vol.30 , pp. 111-123
    • Martin, E.R.1    Ritchie, M.D.2    Hahn, L.3    Kang, S.4    Moore, J.H.5
  • 21
    • 0002801737 scopus 로고
    • Multivariate information transmission
    • McGill WJ. 1954. Multivariate information transmission. Psychometrika 19:97-116.
    • (1954) Psychometrika , vol.19 , pp. 97-116
    • McGill, W.J.1
  • 22
    • 69449103972 scopus 로고    scopus 로고
    • Epistasis and its implications for personal genetics
    • Moore JH, Williams SM. 2009. Epistasis and its implications for personal genetics. Am J Hum Genet 85:309-320.
    • (2009) Am J Hum Genet , vol.85 , pp. 309-320
    • Moore, J.H.1    Williams, S.M.2
  • 23
    • 0002612450 scopus 로고    scopus 로고
    • Applications of genetic algorithms to the discovery of complex models for simulation studies in human genetics
    • Langdon WB, Cantu-Paz E, Mathias K, Roy R, Davis D, Poli R, Balakrishnan K, Honavar V, Rudolph G, Wegener J, Bull L, Potter MA, Schultz AC, Miller JF, Burke E, Jonoska N, editors. San Francisco: Morgan Kaufmann
    • Moore JH, Hahn LW, Ritchie MD, Thornton TA, White BC. 2002. Applications of genetic algorithms to the discovery of complex models for simulation studies in human genetics. In: Langdon WB, Cantu-Paz E, Mathias K, Roy R, Davis D, Poli R, Balakrishnan K, Honavar V, Rudolph G, Wegener J, Bull L, Potter MA, Schultz AC, Miller JF, Burke E, Jonoska N, editors. Proceedings of the Genetic and Evolutionary Computation Conference. San Francisco: Morgan Kaufmann, p 1150-1155.
    • (2002) Proceedings of the Genetic and Evolutionary Computation Conference , pp. 1150-1155
    • Moore, J.H.1    Hahn, L.W.2    Ritchie, M.D.3    Thornton, T.A.4    White, B.C.5
  • 24
    • 33745599582 scopus 로고    scopus 로고
    • A flexible computational framework for detecting, characterizing, and interpreting statistical patterns of epistasis in genetic studies of human disease susceptibility
    • Moore JH, Gilbert JC, Tsai CT, Chiang FT, Holden T, Barney N, White BC. 2006 A flexible computational framework for detecting, characterizing, and interpreting statistical patterns of epistasis in genetic studies of human disease susceptibility. J Theor Biol 241:252-261.
    • (2006) J Theor Biol , vol.241 , pp. 252-261
    • Moore, J.H.1    Gilbert, J.C.2    Tsai, C.T.3    Chiang, F.T.4    Holden, T.5    Barney, N.6    White, B.C.7
  • 25
    • 0038315436 scopus 로고    scopus 로고
    • Entropy as a measure for linkage disequilibrium over multilocus haplotype blocks
    • Nothnagel M, Furst R, Rohde K. 2002. Entropy as a measure for linkage disequilibrium over multilocus haplotype blocks. Hum Hered 54:186-198.
    • (2002) Hum Hered , vol.54 , pp. 186-198
    • Nothnagel, M.1    Furst, R.2    Rohde, K.3
  • 26
    • 0034973569 scopus 로고    scopus 로고
    • Multifactor dimensionality reduction reveals high-order interactions among estrogen metabolism genes in sporadic breast cancer
    • Ritchie MD, Hahn LW, Roodi N, Bailey LR, Dupont WD, Parl FF, Moore JH. 2001. Multifactor dimensionality reduction reveals high-order interactions among estrogen metabolism genes in sporadic breast cancer. Am J Hum Genet 69:138-147.
    • (2001) Am J Hum Genet , vol.69 , pp. 138-147
    • Ritchie, M.D.1    Hahn, L.W.2    Roodi, N.3    Bailey, L.R.4    Dupont, W.D.5    Parl, F.F.6    Moore, J.H.7
  • 27
    • 0037310257 scopus 로고    scopus 로고
    • Power of multifactor dimensionality reduction for detecting gene-gene interactions in the presence of genotyping error, phenocopy, and genetic heterogeneity
    • Ritchie MD, Hahn LW, Moore JH. 2003a. Power of multifactor dimensionality reduction for detecting gene-gene interactions in the presence of genotyping error, phenocopy, and genetic heterogeneity. Genet Epidemiol 24:150-157.
    • (2003) Genet Epidemiol , vol.24 , pp. 150-157
    • Ritchie, M.D.1    Hahn, L.W.2    Moore, J.H.3
  • 28
    • 0642368712 scopus 로고    scopus 로고
    • Optimization of neural network architecture using genetic programming improves the detection and modeling of gene-gene interactions in studies of human diseases
    • Ritchie MD, White BC, Parker JS, Hahn LW, Moore JH. 2003b. Optimization of neural network architecture using genetic programming improves the detection and modeling of gene-gene interactions in studies of human diseases. BMC Bioinform 4:28.
    • (2003) BMC Bioinform , vol.4 , pp. 28
    • Ritchie, M.D.1    White, B.C.2    Parker, J.S.3    Hahn, L.W.4    Moore, J.H.5
  • 29
    • 35048891558 scopus 로고    scopus 로고
    • Genetic programming neural networks as a bioinformatics tool in human genetics
    • Ritchie MD, Coffey CS, Moore JH. 2004 Genetic programming neural networks as a bioinformatics tool in human genetics. Lect Notes Comput Sci 3102:438-448.
    • (2004) Lect Notes Comput Sci , vol.3102 , pp. 438-448
    • Ritchie, M.D.1    Coffey, C.S.2    Moore, J.H.3
  • 30
    • 84856043672 scopus 로고
    • A mathematical theory of communications
    • 623-656.
    • Shannon CE. 1948. A mathematical theory of communications. Bell Syst Techn J XXVII:379-423, 623-656.
    • (1948) Bell Syst Techn J , vol.27 , pp. 379-423
    • Shannon, C.E.1
  • 33
    • 77956395423 scopus 로고    scopus 로고
    • BOOST: a fast approach to detecting gene-gene interactions in genome-wide case-control studies
    • Wan X, Yang C, Yang Q, Xue H, Fan X, Tang NLS, Yu Y. 2010. BOOST: a fast approach to detecting gene-gene interactions in genome-wide case-control studies. Am J Hum Genet 87:325-340.
    • (2010) Am J Hum Genet , vol.87 , pp. 325-340
    • Wan, X.1    Yang, C.2    Yang, Q.3    Xue, H.4    Fan, X.5    Tang, N.L.S.6    Yu, Y.7
  • 34
    • 0345997703 scopus 로고
    • Information theoretical analysis of multivariate correlation
    • Watanabe S. 1960. Information theoretical analysis of multivariate correlation. IBM J Res Dev 4:66-82.
    • (1960) IBM J Res Dev , vol.4 , pp. 66-82
    • Watanabe, S.1
  • 35
    • 84887212481 scopus 로고    scopus 로고
    • Mutual information for testing gene-environmental interaction
    • Wu X, Jin L, Xiong MM. 2009. Mutual information for testing gene-environmental interaction. PLos One e4578.
    • (2009) PLos One
    • Wu, X.1    Jin, L.2    Xiong, M.M.3
  • 36
    • 0026155039 scopus 로고
    • A new outlook on Shannon's information measures
    • Yeung RW. 1991. A new outlook on Shannon's information measures. IEEE Trans Inf Theory 37:466-474.
    • (1991) IEEE Trans Inf Theory , vol.37 , pp. 466-474
    • Yeung, R.W.1
  • 37
    • 34548352849 scopus 로고    scopus 로고
    • Bayesian inference of epistatic interactions in case-control studies
    • Zhang Y, Liu JS. 2007 Bayesian inference of epistatic interactions in case-control studies. Nat Genet 39:1167-1173.
    • (2007) Nat Genet , vol.39 , pp. 1167-1173
    • Zhang, Y.1    Liu, J.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.