Novel actin-like filament structure from Clostridium tetani

Journal of Biological Chemistry

Volumn 287, Issue 25, 2012, Pages 21121-21129

  Popp, David ^a   Narita, Akihiro ^b   Lee, Lin Jie ^a   Ghoshdastider, Umesh ^c   Xue, Bo ^a   Srinivasan, Ramanujam ^d   Balasubramanian, Mohan K ^d,e   Tanaka, Toshitsugu ^b   Robinson, Robert C ^a,e,f  

^a INSTITUTE OF MOLECULAR AND CELL BIOLOGY   (Singapore)

^b NAGOYA UNIVERSITY   (Japan)

^c GOETHE UNIVERSITY   (Germany)

^d NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

^e NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

^f NANYANG TECHNOLOGICAL UNIVERSITY   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

CLOSTRIDIUM TETANI; DRUG DESIGN; F-ACTIN; FILAMENT STRUCTURE; HELICAL CYLINDERS; HELICAL POLYMERS; HOMOLOGY MODELS; POTENTIAL TARGETS; PROTOFILAMENTS; TETANUS TOXIN;

CLOSTRIDIUM; ELECTRON MICROSCOPY; STRUCTURAL DESIGN;

PROTEINS;

ACTIN LIKE PROTEIN 12; BACTERIAL PROTEIN; F ACTIN; UNCLASSIFIED DRUG;

ARTICLE; BETA SHEET; CHROMATIN ASSEMBLY AND DISASSEMBLY; CLOSTRIDIUM TETANI; CONTROLLED STUDY; CRYSTAL STRUCTURE; DEPOLYMERIZATION; ELECTRON MICROSCOPY; LIGHT SCATTERING; MICROTUBULE; MOLECULAR INTERACTION; NONHUMAN; PRIORITY JOURNAL; PROTEIN FUNCTION; STRUCTURE ANALYSIS;

ACTIN CYTOSKELETON; ACTINS; BACTERIAL PROTEINS; CLOSTRIDIUM TETANI; MODELS, MOLECULAR; PLASMIDS; PROTEIN STRUCTURE, SECONDARY;

EID: 84862287080     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M112.341016     Document Type: Article

References (37)

1. Carballido-Lopez, R., and Errington, J. (2003) A dynamic bacterial cytoskeleton. Trends Cell Biol. 11, 577-583 (Pubitemid 37311397)
2. van den Ent, F., Amos, L. A., and Löwe, J. (2001) Prokaryotic origin of the actin cytoskeleton. Nature 413, 39-44 (Pubitemid 32843480)
3. Popp, D., Narita, A., Maeda, K., Fujisawa, T., Ghoshdastider, U., Iwasa, M., Maéda, Y., and Robinson, R. C. (2010) Filament structure, organization, and dynamics in MreB sheets. J. Biol. Chem. 285, 15858-15865
4. Popp, D., and Robinson, R. C. (2011) Many ways to build an actin filament. Mol. Microbiol. 80, 300-308
5. Jensen, R. B., and Gerdes, K. (1999) Mechanism of DNA segregation in prokaryotes: ParM partitioning protein of plasmid R1 co-localizes with its replicon during the cell cycle. EMBO J. 18, 4076-4084 (Pubitemid 29335860)
6. Salje, J., Zuber, B., and Löwe, J. (2009) Electron cryomicroscopy of E. coli reveals filament bundles involved in plasmid DNA segregation. Science 323, 509-512
7. Popp, D., Xu, W., Narita, A., Brzoska, A. J., Skurray, R. A., Firth, N., Ghoshdastider, U., Maéda, Y., Robinson, R. C., and Schumacher, M. A. (2010) Structure and filament dynamics of the pSK41 actin-like ParM protein: implications for plasmid DNA segregation. J. Biol. Chem. 285, 10130-10140
8. Polka, J. K., Kollman, J. M., Agard, D. A., and Mullins, R. D. (2009) The structure and assembly dynamics of plasmid actin AlfA imply a novel mechanism of DNA segregation. J. Bacteriol. 191, 6219-6230
9. Popp, D., Narita, A., Ghoshdastider, U., Maeda, K., Maéda, Y., Oda, T., Fujisawa, T., Onishi, H., Ito, K., and Robinson, R. C. (2010) Polymeric structures and dynamic properties of the bacterial actin AlfA. J. Mol. Biol. 397, 1031-1041
10. van den Ent, F., Møller-Jensen, J., Amos, L. A., Gerdes, K., and Löwe, J. (2002) F-actin-like filaments formed by plasmid segregation protein ParM. EMBO J. 21, 6935-6943
11. Derman, A. I., Becker, E. C., Truong, B. D., Fujioka, A., Tucey, T. M., Erb, M. L., Patterson, P. C., and Pogliano, J. (2009) Phylogenetic analysis identifies many uncharacterized actin-like proteins (Alps) in bacteria: regulated polymerization, dynamic instability, and treadmilling in Alp7A. Mol. Microbiol. 73, 534-552
12. Brüggemann, H., Bäumer, S., Fricke, W. F., Wiezer, A., Liesegang, H., Decker, I., Herzberg, C., Martinez-Arias, R., Merkl, R., Henne A., and Gottschalk, G. (2003) The genome sequence of Clostridium tetani, the causative agent of tetanus disease. Proc. Natl. Acad. Sci. U.S.A. 100, 1316-1321 (Pubitemid 36183999)
13. Chumnarnsilpa, S., Lee, W. L., Nag, S., Kannan, B., Larsson, M., Burtnick, L. D., and Robinson, R. C. (2009) The crystal structure of theCterminus of adseverin reveals the actin-binding interface. Proc. Natl. Acad. Sci. U.S.A. 106, 13719-13724
14. Cayley, S., Lewis, B. A., Guttman, H. J., and Record, M. T. (1991) Characterization of the cytoplasm of Escherichia coli K-12 as a function of external osmolarity. Implications for protein-DNA interactions in vivo. J. Mol. Biol. 222, 281-300 (Pubitemid 121004007)
15. Webb, M. R. (1992) A continuous spectrophotometric assay for inorganic phosphate and for measuring phosphate release kinetics in biological systems. Proc. Natl. Acad. Sci. U.S.A. 89, 4884-4887
16. Kuzmic, P. (1996) Program DYNAFIT for the analysis of enzyme kinetic data: application to HIV proteinase. Anal. Biochem. 237, 260-273
17. Kuzmic, P. (2009) DYNAFIT: a software package for enzymology. Methods Enzymol. 467, 247-280
18. Zhao, F. Q., and Craig, R. (2003) Capturing time-resolved changes in molecular structure by negative staining. J. Struct. Biol. 141, 43-52
19. Yasunaga, T., and Wakabayashi, T. (1996) Extensible and object-oriented system EOS supplies a new environment for image analysis of electron micrographs of macromolecules. J. Struct. Biol. 116, 155-160 (Pubitemid 26093138)
20. Popp, D., Narita, A., Oda, T., Fujisawa, T., Matsuo, H., Nitanai, Y., Iwasa, M., Maeda, K., Onishi, H., and Maéda, Y. (2008) Molecular structure of the ParM polymer and the mechanism leading to its nucleotide-driven dynamic instability. EMBO J. 27, 570-579 (Pubitemid 351225678)
21. Popp, D., Yamamoto, A., Iwasa, M., Narita, A., Maeda, K., and Maéda Y. (2007) Concerning the dynamic instability of actin homolog ParM. Biochem. Biophys. Res. Comm. 353, 109-114 (Pubitemid 46001377)
22. Kuhn, J. R., and Pollard, T. D. (2005) Real-time measurements of actin filament polymerization by total internal reflection fluorescence microscopy. Biophys. J. 88, 1387-1402 (Pubitemid 40975966)
23. Popp, D., Narita, A., Iwasa, M., Maéda, Y., and Robinson, R. C. (2010) Molecular mechanism of bundle formation by the bacterial actin ParM. Biochem. Biophys. Res. Comm. 391, 1598-1603
24. Srinivasan, R., Mishra, M., Wu, L., Yin, Z., and Balasubramanian, M. K. (2008) The bacterial cell division protein FtsZ assembles into cytoplasmic rings in fission yeast. Genes Dev. 22, 1741-1746 (Pubitemid 351915498)
25. Stewart, M. (1988) Computer image processing of electron micrographs of biological structures with helical symmetry. J. Electron Microsc. Tech. 9, 325-358
26. Narita, A., and Maéda, Y. (2007) Molecular determination by electron microscopy of the actin filament end structure. J. Mol. Biol. 365, 480-501 (Pubitemid 44838706)
27. Wriggers, W., and Birmanns, S. (2001) Using Situs for flexible and rigid-body fitting of multiresolution single-molecule data. J. Struct. Biol. 133, 193-202
28. Phillips, J. C., Braun, R., Wang, W., Gumbart, J., Tajkhorshid, E., Villa, E., Chipot, C., Skeel, R. D., Kalé, L., and Schulten, K. (2005) Scalable molecular dynamics with NAMD. J. Comput. Chem. 26, 1781-1802 29.
29. van Heel, M., and Schatz, M. (2005) Fourier shell correlation threshold criteria. J. Struct. Biol. 151, 250-262
30. Oosawa, F., and Asakura, S. (1975) Thermodynamics of the Polymerization of Protein, Academic Press, London
31. Garner, E. C., Campbell, C. S., and Mullins, R. D. (2004) Dynamic instability in a DNA-segregating prokaryotic actin homolog. Science 306, 1021-1025 (Pubitemid 39482903)
32. Nishida, E., and Sakai, H. (1983) Kinetic analysis of actin polymerization. J. Biochem. 93, 1011-1020 (Pubitemid 13042874)
33. Melki, R., Carlier, M. F., and Pantaloni, D. (1988) Oscillations in microtubule polymerization: the rate of GTP regeneration on tubulin controls the period. EMBO J. 7, 2653-2659
34. Mandelkow, E. M., and Mandelkow, E. (1992) Microtubule oscillations. Cell Motil. Cytoskeleton 22, 235-244
35. Bean, G. J., and Amann, K. (2008) Polymerization properties of the Thermotoga maritima actin MreB: roles of temperature, nucleotides, and ions. Biochemistry 47, 826-835 (Pubitemid 351195454)
36. Galkin, V. E., Orlova, A., Rivera, C., Mullins, R. D., and Egelman, E. H. (2009) Structural polymorphism of the ParM filament and dynamic instability. Structure 17, 1253-1264
37. He, Z. H., Chillingworth, R. K., Brune, M., Corrie, J. E., Trentham, D. R., Webb, M. R., and Ferenczi, M. A. (1997) ATPase kinetics on activation of rabbit and frog permeabilized isometric muscle fibers: a real-time phosphate assay. J. Physiol. 501, 125-148 (Pubitemid 27230407)