-
1
-
-
58149200940
-
Human immunodeficiency virus type 1, human protein interaction database at NCBI
-
Fu, W., Sanders-Beer, B. E., Katz, K. S. et al. (2009) Human immunodeficiency virus type 1, human protein interaction database at NCB I. Nucleic Acids Res., 37, D417-D422.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Fu, W.1
Sanders-Beer, B.E.2
Katz, K.S.3
-
2
-
-
58149107292
-
Cataloguing the HIV type 1 human protein interaction network
-
Ptak, R. G., Fu, W., Sanders-Beer, B. E. et al. (2008) Cataloguing the HIV type 1human protein interaction network. AIDS Res. Hum. Retroviruses, 24, 1497-1502.
-
(2008)
AIDS Res. Hum. Retroviruses
, vol.24
, pp. 1497-1502
-
-
Ptak, R.G.1
Fu, W.2
Sanders-Beer, B.E.3
-
4
-
-
77953058171
-
The biological context of HIV-1 host interactions reveals subtle insights into a system hijack
-
Dickerson, J. E., Pinney, J. W. and Robertson, D. L. (2010) The biological context of HIV-1 host interactions reveals subtle insights into a system hijack. BMC Syst. Biol., 4, 80.
-
(2010)
BMC Syst. Biol.
, Issue.4
, pp. 80
-
-
Dickerson, J.E.1
Pinney, J.W.2
Robertson, D.L.3
-
5
-
-
78049296111
-
Patterns of HIV-1 protein interaction identify perturbed host-cellular subsystems
-
MacPherson, J. I., Dickerson, J. E., Pinney, J. W. and Robertson, D. L. (2010) Patterns of HIV-1 protein interaction identify perturbed host-cellular subsystems. PLoS Comput. Biol., 6, e1000863.
-
(2010)
PLoS Comput. Biol.
, Issue.6
-
-
MacPherson, J.I.1
Dickerson, J.E.2
Pinney, J.W.3
Robertson, D.L.4
-
6
-
-
67249143012
-
Host cell factors in HIV replication: Meta-analysis of genome-wide studies
-
Bushman, F. D., Malani, N., Fernandes, J. et al. (2009) Host cell factors in HIV replication: meta-analysis of genome-wide studies. PLoS Pathog., 5, e1000437.
-
(2009)
PLoS Pathog.
, vol.5
-
-
Bushman, F.D.1
Malani, N.2
Fernandes, J.3
-
7
-
-
39349097864
-
Identification of host proteins required for HIV infection through a functional genomic screen
-
DOI 10.1126/science.1152725
-
Brass, A. L., Dykxhoorn, D. M., Benita, Y. et al. (2008) Identification of host proteins required for HIV infection through a functional genomic screen. Science, 319, 921-926. (Pubitemid 351263756)
-
(2008)
Science
, vol.319
, Issue.5865
, pp. 921-926
-
-
Brass, A.L.1
Dykxhoorn, D.M.2
Benita, Y.3
Yan, N.4
Engelman, A.5
Xavier, R.J.6
Lieberman, J.7
Elledge, S.J.8
-
8
-
-
16244403024
-
Text-mining approaches in molecular biology and biomedicine
-
DOI 10.1016/S1359-6446(05)03376-3, PII S1359644604033763
-
Krallinger, M., Erhardt, R. A. and Valencia, A. (2005) Text-mining approaches in molecular biology and biomedicine. Drug Discov. Today, 10, 439-445. (Pubitemid 40450274)
-
(2005)
Drug Discovery Today
, vol.10
, Issue.6
, pp. 439-445
-
-
Krallinger, M.1
Erhardt, R.A.-A.2
Valencia, A.3
-
9
-
-
36348990139
-
Frontiers of biomedical text mining: Current progress
-
DOI 10.1093/bib/bbm045, Special Issue: Current Progress in Bioinformatics: 2007
-
Zweigenbaum, P., Demner-Fushman, D., Yu, H. and Cohen, K. B. (2007) Frontiers of biomedical text mining: current progress. Brief. Bioinform., 8, 358-375. (Pubitemid 350142624)
-
(2007)
Briefings in Bioinformatics
, vol.8
, Issue.5
, pp. 358-375
-
-
Zweigenbaum, P.1
Demner-fushman, D.2
Yu, H.3
Cohen, K.B.4
-
10
-
-
77955441742
-
An overview of BioCreative I I.5
-
Leitner, F., Mardis, S. A., Krallinger, M. et al. (2010) An overview of BioCreative I I.5. IEEE/ACM Trans. Comput. Biol. Bioinform., 7, 385-399.
-
(2010)
IEEE/ACM Trans. Comput. Biol. Bioinform.
, Issue.7
, pp. 385-399
-
-
Leitner, F.1
Mardis, S.A.2
Krallinger, M.3
-
11
-
-
85104042765
-
Overview of BioNLP'09 shared task on event extraction
-
Kim, J. D., Ohta, T., Pyysalo, S. et al. (2009) Overview of BioNLP'09 shared task on event extraction. Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task ACL, 1-9.
-
(2009)
Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task ACL
, pp. 1-9
-
-
Kim, J.D.1
Ohta, T.2
Pyysalo, S.3
-
12
-
-
67649892577
-
Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens
-
Zaremba, S., Ramos-Santacruz, M., Hampton, T. et al. (2009) Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens. BMC Bioinformatics, 10, 177.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 177
-
-
Zaremba, S.1
Ramos-Santacruz, M.2
Hampton, T.3
-
13
-
-
77954190136
-
Complex event extraction at PubMed scale
-
Bjorne, J., Ginter, F., Pyysalo, S. et al. (2010) Complex event extraction at PubMed scale. Bioinformatics, 26, i382-i390.
-
(2010)
Bioinformatics
, vol.26
-
-
Bjorne, J.1
Ginter, F.2
Pyysalo, S.3
-
14
-
-
16244370127
-
Protein name tagging guidelines: Lessons learned
-
DOI 10.1002/cfg.452
-
Mani, I., Hu, Z., Jang, S. B. et al. (2005) Protein name tagging guidelines: lessons learned. Comp. Funct. Genomics, 6, 72-76. (Pubitemid 40450610)
-
(2005)
Comparative and Functional Genomics
, vol.6
, Issue.1-2
, pp. 72-76
-
-
Mani, I.1
Hu, Z.2
Jang, S.B.3
Samuel, K.4
Krause, M.5
Phillips, J.6
Wu, C.H.7
-
15
-
-
77951600909
-
Event extraction with complex event classification using rich features
-
Miwa, M., Saetre, R., Kim, J. D. and Tsujii, J. (2010) Event extraction with complex event classification using rich features. J. Bioinformatics Comput. Biol., 8, 131-146.
-
(2010)
J. Bioinformatics Comput. Biol.
, vol.8
, pp. 131-146
-
-
Miwa, M.1
Saetre, R.2
Kim, J.D.3
Tsujii, J.4
-
16
-
-
70449720821
-
Text mining and manual curation of chemical-gene-disease networks for the comparative toxicogenomics database (CTD)
-
Wiegers, T. C., Davis, A. P., Cohen, K. B. et al. (2009) Text mining and manual curation of chemical-gene-disease networks for the comparative toxicogenomics database (CTD). BMC Bioinformatics, 10, 326.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 326
-
-
Wiegers, T.C.1
Davis, A.P.2
Cohen, K.B.3
-
17
-
-
77954195270
-
PathText: A text mining integrator for biological pathway visualizations
-
Kemper, B., Matsuzaki, T., Matsuoka, Y. et al. (2010) PathText: a text mining integrator for biological pathway visualizations. Bioinformatics, 26, i374-i381.
-
(2010)
Bioinformatics
, Issue.26
-
-
Kemper, B.1
Matsuzaki, T.2
Matsuoka, Y.3
-
18
-
-
40549140499
-
BANNER: An executable survey of advances in biomedical named entity recognition
-
Leaman, R. and Gonzalez, G. (2008) BANNER: an executable survey of advances in biomedical named entity recognition. Proc. Paci. Symp. Biocomp., 652-663.
-
(2008)
Proc. Paci. Symp. Biocomp.
, pp. 652-663
-
-
Leaman, R.1
Gonzalez, G.2
-
19
-
-
77955441742
-
An overview of biocreative I I.5
-
Leitner, F., Mardis, S. A., Krallinger, M. et al. (2009) An Overview of BioCreative I I.5. IEEE/ACM Trans. Comput. Biol. Bioinform., 7, 385-399.
-
(2009)
IEEE/ACM Trans. Comput. Biol. Bioinform.
, vol.7
, pp. 385-399
-
-
Leitner, F.1
Mardis, S.A.2
Krallinger, M.3
-
21
-
-
33947250174
-
GENETAG: A tagged corpus for gene/protein named entity recognition
-
Tanabe, L., Xie, N., Thom, L. H. et al. (2005) GENETAG: a tagged corpus for gene/protein named entity recognition. BMC Bioinformatics, 6 (Suppl. 1), S3.
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.SUPPL. 1
-
-
Tanabe, L.1
Xie, N.2
Thom, L.H.3
-
22
-
-
84875070496
-
-
NCB I. Entrez Gene
-
NCB I. (2011) Entrez Gene, http://www.ncbi.nlm.nih.gov/gene.
-
(2011)
-
-
-
23
-
-
33748656943
-
Gene and protein nomenclature in public databases
-
Fundel, K. and Zimmer, R. (2006) Gene and protein nomenclature in public databases. BMC Bioinformatics, 7, 372.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 372
-
-
Fundel, K.1
Zimmer, R.2
-
24
-
-
4944229711
-
GENIA corpus - A semantically annotated corpus for bio-textmining
-
DOI 10.1093/bioinformatics/btg1023
-
Kim, J. D., Ohta, T., Tateisi, Y. and Tsujii, J. (2003) GENIA corpus-semantically annotated corpus for bio-textmining. Bioinformatics, 19 (Suppl. 1), i180-i182. (Pubitemid 41185616)
-
(2003)
Bioinformatics
, vol.19
, Issue.SUPPL. 1
-
-
Kim, J.-D.1
Ohta, T.2
Tateisi, Y.3
Tsujii, J.4
-
25
-
-
85121797056
-
Extracting complex biological events with rich graph-based feature sets
-
Colorado
-
Björne, J., Heimonen, J., Ginter, F. et al. (2009) Extracting complex biological events with rich graph-based feature sets. In Proceedings of the Workshop on BioNLP Shared Task Boulder, Colorado, 10-18.
-
(2009)
Proceedings of the Workshop on BioNLP Shared Task Boulder
, pp. 10-18
-
-
Björne, J.1
Heimonen, J.2
Ginter, F.3
-
26
-
-
0028030526
-
Stimulation of heterologous protein degradation by the Vpu protein of HIV-1 requires the transmembrane and cytoplasmic domains of CD4
-
DOI 10.1006/viro.1994.1560
-
Buonocore, L., Turi, T. G., Crise, B. and Rose, J. K. (1994) Stimulation of heterologous protein degradation by the Vpu protein of HIV-1 requires the transmembrane and cytoplasmic domains of CD4. Virology, 204, 482-486. (Pubitemid 24305368)
-
(1994)
Virology
, vol.204
, Issue.1
, pp. 482-486
-
-
Buonocore, L.1
Turi, T.G.2
Crise, B.3
Rose, J.K.4
-
27
-
-
0028816432
-
The human immunodeficiency virus type 1 Vpu protein specifically binds to the cytoplasmic domain of CD4: Implications for the mechanism of degradation
-
Bour, S., Schubert, U. and Strebel, K. (1995) The human immunodeficiency virus type 1 Vpu protein specifically binds to the cytoplasmic domain of CD4: implications for the mechanism of degradation. J. Virol., 69, 1510-1520.
-
(1995)
J. Virol.
, vol.69
, pp. 1510-1520
-
-
Bour, S.1
Schubert, U.2
Strebel, K.3
-
28
-
-
0030587419
-
Interaction between the cytoplasmic domains of HIV-1 Vpu and CD4: Role of Vpu residues involved in CD4 interaction and in vitro CD4 degradation
-
DOI 10.1006/viro.1996.0491
-
Margottin, F., Benichou, S., Durand, H. et al. (1996) Interaction between the cytoplasmic domains of HIV-1 Vpu and CD4: role of Vpu residues involved in CD4 interaction and in vitro CD4 degradation. Virology, 223, 381-386. (Pubitemid 26319600)
-
(1996)
Virology
, vol.223
, Issue.2
, pp. 381-386
-
-
Margottin, F.1
Benichou, S.2
Durand, H.3
Richard, V.4
Liu, L.X.5
Gomas, E.6
Benarous, R.7
-
29
-
-
0029909476
-
Bimodal down-regulation of CD4 in cells expressing human immunodeficiency virus type 1 Vpu and Env
-
Fujita, K., Maldarelli, F. and Silver, J. (1996) Bimodal down-regulation of CD4 in cells expressing human immunodeficiency virus type 1 Vpu and Env. J. Gen. Virol., 77 (Pt 10), 2393-2401. (Pubitemid 26348359)
-
(1996)
Journal of General Virology
, vol.77
, Issue.10
, pp. 2393-2401
-
-
Fujita, K.1
Maldarelli, F.2
Silver, J.3
-
30
-
-
21244464335
-
Binding properties and evolution of homodimers in protein-protein interaction networks
-
DOI 10.1093/nar/gki678
-
Ispolatov, I., Yuryev, A., Mazo, I. and Maslov, S. (2005) Binding properties and evolution of homodimers in protein-protein interaction networks. Nucleic Acids Res., 33, 3629-3635. (Pubitemid 41430585)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.11
, pp. 3629-3635
-
-
Ispolatov, I.1
Yuryev, A.2
Mazo, I.3
Maslov, S.4
-
31
-
-
11444253965
-
HIV-1 TAR RNA: The target of molecular interactions between the virus and its host
-
DOI 10.2174/1570162052772924
-
Bannwarth, S. and Gatignol, A. (2005) HIV-1 TAR RNA: the target of molecular interactions between the virus and its host. Curr. HIV Res., 3, 61-71. (Pubitemid 40081286)
-
(2005)
Current HIV Research
, vol.3
, Issue.1
, pp. 61-71
-
-
Bannwarth, S.1
Gatignol, A.2
-
32
-
-
0034812556
-
HIV-1 Tat can substantially enhance the capacity of NIK to induce IκB degradation
-
DOI 10.1006/bbrc.2001.5442
-
Li, X., Josef, J. and Marasco, W. A. (2001) Hiv-1 Tat can substantially enhance the capacity of NIK to induce IkappaB degradation. Biochem. Biophys. Res. Commun., 286, 587-594. (Pubitemid 32912987)
-
(2001)
Biochemical and Biophysical Research Communications
, vol.286
, Issue.3
, pp. 587-594
-
-
Li, X.1
Josef, J.2
Marasco, W.A.3
-
33
-
-
77949265998
-
Beyond genes, proteins, and abstracts: Identifying scientific claims from full-text biomedical articles
-
Blake, C. (2010) Beyond genes, proteins, and abstracts: identifying scientific claims from full-text biomedical articles. J. Biomed. Informatics, 43, 173-189.
-
(2010)
J. Biomed. Informatics
, vol.43
, pp. 173-189
-
-
Blake, C.1
-
34
-
-
80053441509
-
The GNAT library for local and remote gene mention normalization
-
Hakenberg, J., Gerner, M., Haeussler, M. et al. (2011) The GNAT library for local and remote gene mention normalization. Bioinformatics, 27, 2769-2771.
-
(2011)
Bioinformatics
, vol.27
, pp. 2769-2771
-
-
Hakenberg, J.1
Gerner, M.2
Haeussler, M.3
-
35
-
-
84864074911
-
Gene mention normalization in full texts using GNAT and LINNAEUS
-
Bethesda, USA
-
Solt, I., Gerner, M., Thomas, P. et al. (2010) Gene mention normalization in full texts using GNAT and LINNAEU S. In Proceedings of the BioCreative III Workshop, Bethesda, US A.
-
(2010)
Proceedings of the BioCreative III Workshop
-
-
Solt, I.1
Gerner, M.2
Thomas, P.3
-
36
-
-
79953325924
-
GeneTUKit: A software for document-level gene normalization
-
Huang, M., Liu, J. and Zhu, X. (2011) GeneTUKit: a software for document-level gene normalization. Bioinformatics, 27, 1032-1033.
-
(2011)
Bioinformatics
, vol.27
, pp. 1032-1033
-
-
Huang, M.1
Liu, J.2
Zhu, X.3
|