The GNAT library for local and remote gene mention normalization

Bioinformatics

Volumn 27, Issue 19, 2011, Pages 2769-2771

  Hakenberg, Jörg ^a   Gerner, Martin ^b   Haeussler, Maximilian ^b   Solt, Illés ^c   Plake, Conrad ^d   Schroeder, Michael ^e   Gonzalez, Graciela ^f   Nenadic, Goran ^b   Bergman, Casey M ^b  

^a HOFFMANN LA ROCHE INC   (United States)

^b UNIVERSITY OF MANCHESTER   (United Kingdom)

^c HUMBOLDT UNIVERSITY   (Germany)

^d MAX DELBRÜCK CENTER FOR MOLECULAR MEDICINE   (Germany)

^e DRESDEN UNIVERSITY OF TECHNOLOGY   (Germany)

^f ARIZONA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

ARTICLE; DATA MINING; GENE; GENE LIBRARY; INFORMATION PROCESSING; INTERNET; NOMENCLATURE; PUBLISHING;

AUTOMATIC DATA PROCESSING; DATA MINING; GENE LIBRARY; GENES; INTERNET; PROTEINS; PUBLISHING; TERMINOLOGY AS TOPIC;

EID: 80053441509     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr455     Document Type: Article

References (11)

1. Carroll, H.D. et al. (2010) TAP-k: a measure of retrieval designed for bioinformatics. Bioinformatics, 26, 1708-1713.
2. Gerner, M. et al. (2010) Linnaeus: a species name identification system for biomedical literature. BMC Bioinformatics, 11, 85.
3. Haeussler, M. et al. (2011) Annotating genes and genomes with DNA sequences extracted from biomedical articles. Bioinformatics, 27, 980-986.
4. Hakenberg, J. et al. (2008) Inter-species normalization of gene mentions with GNAT. Bioinformatics, 24, i126-i132.
5. Hirschman, L. et al. (2005) Overview of BioCreAtIvE task 1B: normalized gene lists. BMC Bioinformatics, 6, S11.
6. Huang, M. et al. (2011) GeneTUKit: a software for document-level gene normalization. Bioinformatics, 27, 1032-1033.
7. Leaman, R. and Gonzalez G. (2008) BANNER: An executable survey of advances in biomedical named entity recognition. Pac. Symp. Biocomput., 13, 652-663.
8. Lu, Z. and Wilbur, J. (2010) Overview of BioCreative III Gene Normalization. In Proceedings of the BioCreative III, 20-35, September 13-15. Bethesda/MD, USA.
9. Morgan, A. et al. (2008) Overview of BioCreative II Gene Normalization. Genome Biol., 9, S3.
10. Solt, I. et al. (2010) Gene mention normalization in full texts using Gnat and Linnaeus. In Proceedings of the BioCreative III, 134-139, September 13-15. Bethesda/MA, USA.
11. Tamames, J. and Valencia, A. (2006) The success (or not) of HUGO nomenclature. Genome Biol., 7, 402.