메뉴 건너뛰기




Volumn 67-68, Issue , 2012, Pages 63-70

Comparative evaluation of pK a prediction tools on a drug discovery dataset

Author keywords

Consensus pK a; Discovery compounds; Ionization constant; PK a prediction; Potentiometric titration

Indexed keywords

ALIPHATIC COMPOUND;

EID: 84862151659     PISSN: 07317085     EISSN: 1873264X     Source Type: Journal    
DOI: 10.1016/j.jpba.2012.04.021     Document Type: Article
Times cited : (38)

References (33)
  • 1
    • 77955714084 scopus 로고    scopus 로고
    • So you think you understand tautomerism?
    • Sayle R.A. So you think you understand tautomerism?. J. Comput. Aided Mol. Des. 2010, 24:485-496.
    • (2010) J. Comput. Aided Mol. Des. , vol.24 , pp. 485-496
    • Sayle, R.A.1
  • 2
    • 78649776250 scopus 로고    scopus 로고
    • Estimating binding affinities by docking/scoring methods using variable protonation states
    • Park M.S., Gao C., Stern H.A. Estimating binding affinities by docking/scoring methods using variable protonation states. Proteins 2011, 79:304-314.
    • (2011) Proteins , vol.79 , pp. 304-314
    • Park, M.S.1    Gao, C.2    Stern, H.A.3
  • 3
    • 78149410394 scopus 로고    scopus 로고
    • PK(a) based protonation states and microspecies for protein-ligand docking
    • ten Brink T., Exner T.E. pK(a) based protonation states and microspecies for protein-ligand docking. J. Comput. Aided Mol. Des. 2010, 24:935-942.
    • (2010) J. Comput. Aided Mol. Des. , vol.24 , pp. 935-942
    • ten Brink, T.1    Exner, T.E.2
  • 4
    • 39749181550 scopus 로고    scopus 로고
    • Generation of a set of simple, interpretable ADMET rules of thumb
    • Gleeson M.P. Generation of a set of simple, interpretable ADMET rules of thumb. J. Med. Chem. 2008, 51:817-834.
    • (2008) J. Med. Chem. , vol.51 , pp. 817-834
    • Gleeson, M.P.1
  • 5
    • 79952171625 scopus 로고    scopus 로고
    • Probing the links between in vitro potency, ADMET and physicochemical parameters
    • Gleeson M.P., Hersey A., Montanari D., Overington J. Probing the links between in vitro potency, ADMET and physicochemical parameters. Nat. Rev. Drug Discov. 2011, 10:197-208.
    • (2011) Nat. Rev. Drug Discov. , vol.10 , pp. 197-208
    • Gleeson, M.P.1    Hersey, A.2    Montanari, D.3    Overington, J.4
  • 6
    • 33747505446 scopus 로고    scopus 로고
    • Medicinal chemistry of hERG optimizations: highlights and hang-ups
    • Jamieson C., Moir E.M., Rankovic Z., Wishart G. Medicinal chemistry of hERG optimizations: highlights and hang-ups. J. Med. Chem. 2006, 49:5029-5046.
    • (2006) J. Med. Chem. , vol.49 , pp. 5029-5046
    • Jamieson, C.1    Moir, E.M.2    Rankovic, Z.3    Wishart, G.4
  • 8
    • 34250791619 scopus 로고    scopus 로고
    • Evaluation of a published in silico model and construction of a novel Bayesian model for predicting phospholipidosis inducing potential
    • Pelletier D.J., Gehlhaar D., Tilloy-Ellul A., Johnson T.O., Greene N. Evaluation of a published in silico model and construction of a novel Bayesian model for predicting phospholipidosis inducing potential. J. Chem. Inf. Model. 2007, 47:1196-1205.
    • (2007) J. Chem. Inf. Model. , vol.47 , pp. 1196-1205
    • Pelletier, D.J.1    Gehlhaar, D.2    Tilloy-Ellul, A.3    Johnson, T.O.4    Greene, N.5
  • 9
    • 33750928793 scopus 로고    scopus 로고
    • Physicochemical and cell-based approach for early screening of phospholipidosis-inducing potential
    • Tomizawa K., Sugano K., Yamada H., Horii I. Physicochemical and cell-based approach for early screening of phospholipidosis-inducing potential. J. Toxicol. Sci. 2006, 31:315-324.
    • (2006) J. Toxicol. Sci. , vol.31 , pp. 315-324
    • Tomizawa, K.1    Sugano, K.2    Yamada, H.3    Horii, I.4
  • 15
    • 34748840224 scopus 로고    scopus 로고
    • Benchmarking validating algorithms that estimate pK(a) values of drugs based on their molecular structures
    • Meloun M., Bordovská S. Benchmarking validating algorithms that estimate pK(a) values of drugs based on their molecular structures. Anal. Bioanal. Chem. 2007, 389:1267-1281.
    • (2007) Anal. Bioanal. Chem. , vol.389 , pp. 1267-1281
    • Meloun, M.1    Bordovská, S.2
  • 17
    • 73349118457 scopus 로고    scopus 로고
    • Comparison of nine programs predicting pK(a) values of pharmaceutical substances
    • Liao C., Nicklaus M.C. Comparison of nine programs predicting pK(a) values of pharmaceutical substances. J. Chem. Inf. Model. 2009, 49:2801-2812.
    • (2009) J. Chem. Inf. Model. , vol.49 , pp. 2801-2812
    • Liao, C.1    Nicklaus, M.C.2
  • 19
    • 0027245634 scopus 로고
    • PH-metric log P. II: Refinement of partition coefficients and ionization constants of multiprotic substances
    • Avdeef A. pH-metric log P. II: Refinement of partition coefficients and ionization constants of multiprotic substances. J. Pharm. Sci. 1993, 82:183-190.
    • (1993) J. Pharm. Sci. , vol.82 , pp. 183-190
    • Avdeef, A.1
  • 20
    • 0032146512 scopus 로고    scopus 로고
    • Multiwavelength spectrophotometric determination of acid dissociation constants of ionizable drugs
    • Allen R.I., Box K.J., Comer J.E.A., Peake C., Tam K.Y. Multiwavelength spectrophotometric determination of acid dissociation constants of ionizable drugs. J. Pharm. Biomed. Anal. 1998, 17:699-712.
    • (1998) J. Pharm. Biomed. Anal. , vol.17 , pp. 699-712
    • Allen, R.I.1    Box, K.J.2    Comer, J.E.A.3    Peake, C.4    Tam, K.Y.5
  • 22
    • 0142028495 scopus 로고    scopus 로고
    • a determination of water-insoluble compounds. Validation study in methanol/water mixtures
    • a determination of water-insoluble compounds. Validation study in methanol/water mixtures. Int. J. Pharm. 1997, 151:235-248.
    • (1997) Int. J. Pharm. , vol.151 , pp. 235-248
    • Takács-Novák, K.1    Box, K.J.2    Avdeef, A.3
  • 23
    • 79952511904 scopus 로고    scopus 로고
    • Schrödinger, LLC, New York, NY
    • Canvas, Version, 1.3 2010, Schrödinger, LLC, New York, NY.
    • (2010) Canvas, Version, 1.3
  • 24
    • 84862014975 scopus 로고    scopus 로고
    • ACD/pKa DB, Advanced Chemistry Development, Inc
    • Toronto, Ontario, Canada currently
    • ACD/pKa DB, Advanced Chemistry Development, Inc. Toronto, Ontario, Canada. (2010) (currently:). http://www.acdlabs.com/products/percepta/predictors.php.
    • (2010)
  • 26
    • 84862151022 scopus 로고    scopus 로고
    • Schrödinger, LLC, New York, NY
    • Epik Version v20211 2009, Schrödinger, LLC, New York, NY.
    • (2009) Epik Version v20211
  • 29
    • 84862139649 scopus 로고    scopus 로고
    • (2012). http://pharma-algorithms.com/pubs/ADME_Boxes40.pdf.
    • (2012)
  • 30
    • 79954501839 scopus 로고    scopus 로고
    • Sum of ranking differences for method discrimination and its validation: comparison of ranks with random numbers
    • Héberger K., Kollár-Hunek K. Sum of ranking differences for method discrimination and its validation: comparison of ranks with random numbers. J. Chemometr. 2010, 25:151-158.
    • (2010) J. Chemometr. , vol.25 , pp. 151-158
    • Héberger, K.1    Kollár-Hunek, K.2
  • 31
    • 73549117440 scopus 로고    scopus 로고
    • Ranking and similarity for quantitative structure-retention relationship models in predicting Lee retention indices of polycyclic aromatic hydrocarbons
    • Héberger K. Ranking and similarity for quantitative structure-retention relationship models in predicting Lee retention indices of polycyclic aromatic hydrocarbons. Trends Anal. Chem. 2010, 29:101-109.
    • (2010) Trends Anal. Chem. , vol.29 , pp. 101-109
    • Héberger, K.1
  • 32
    • 79952586132 scopus 로고    scopus 로고
    • Comments on the article evaluation of pK(a) estimation methods on 211 druglike compounds
    • Shelley J.C., Calkins D., Sullivan A.P. Comments on the article evaluation of pK(a) estimation methods on 211 druglike compounds. J. Chem. Inf. Model. 2011, 51:102-104.
    • (2011) J. Chem. Inf. Model. , vol.51 , pp. 102-104
    • Shelley, J.C.1    Calkins, D.2    Sullivan, A.P.3
  • 33
    • 62849112750 scopus 로고    scopus 로고
    • Calculation of molecular lipophilicity: state-of-the-art and comparison of log P methods on more than 96,000 compounds
    • Mannhold R., Poda G.I., Ostermann C., Tetko I.V. Calculation of molecular lipophilicity: state-of-the-art and comparison of log P methods on more than 96,000 compounds. J. Pharm. Sci 2009, 98:861-893.
    • (2009) J. Pharm. Sci , vol.98 , pp. 861-893
    • Mannhold, R.1    Poda, G.I.2    Ostermann, C.3    Tetko, I.V.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.