Multiplexing and multivariate analysis in neurodegeneration

Methods

Volumn 56, Issue 4, 2012, Pages 464-470

  Andreasson, Ulf ^a   Portelius, Erik ^a   Pannee, Josef ^a   Zetterberg, Henrik ^a   Blennow, Kaj ^a  

^a UNIVERSITY OF GOTHENBURG   (Sweden)

Author keywords

Mass spectrometry; Multiplex; Multivariate analysis; Neurodegeneration

Indexed keywords

ALGORITHM; ARTICLE; BIOCHIP; CLINICAL RESEARCH; ELECTROCHEMILUMINESCENCE; ENZYME LINKED IMMUNOSORBENT ASSAY; HUMAN; INFORMATION PROCESSING; LUMINESCENCE; MASS SPECTROMETRY; MEDICAL LITERATURE; MULTIPLEXING ANALYSIS; MULTIVARIATE ANALYSIS; NERVE DEGENERATION; PRIORITY JOURNAL; STATISTICAL ANALYSIS;

ALGORITHMS; BIOLOGICAL MARKERS; ENZYME-LINKED IMMUNOSORBENT ASSAY; HUMANS; MASS SPECTROMETRY; METABOLOME; MICROSPHERES; MULTIVARIATE ANALYSIS; NEURODEGENERATIVE DISEASES; PROTEIN ARRAY ANALYSIS;

EID: 84862131659     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2012.02.004     Document Type: Article

References (50)

1. McKhann G.M., Knopman D.S., Chertkow H., Hyman B.T., Jack C.R., Kawas C.H., Klunk W.E., Koroshetz W.J., Manly J.J., Mayeux R., Mohs R.C., Morris J.C., Rossor M.N., Scheltens P., Carrillo M.C., Thies B., Weintraub S., Phelps C.H. Alzheimer's & Dementia 2011, 7:263-269.
2. Albert M.S., DeKosky S.T., Dickson D., Dubois B., Feldman H.H., Fox N.C., Gamst A., Holtzman D.M., Jagust W.J., Petersen R.C., Snyder P.J., Carrillo M.C., Thies B., Phelps C.H. Alzheimers Dement 2011, 7:270-279.
3. Forster R.J., Bertoncello P., Keyes T.E. Annu. Rev. Anal. Chem. (Palo Alto Calif) 2009, 2:359-385.
4. Tanaka K., Waki H., Ido Y., Akita S., Yoshida Y., Yoshida T. Rapid Commun. Mass Spectrom. 1988, 2:151-153.
5. Karas M., Hillenkamp F. Anal. Chem. 1988, 60:2299-2301.
6. Fenn J.B., Mann M., Meng C.K., Wong S.F., Whitehouse C.M. Science 1989, 246:64-71.
7. Stephens W.E. Phys. Rev. 1946, 69:691.
8. McLuckey S.A., Wells J.M. Chem. Rev. 2001, 101:571-606.
9. Cotter R.J., Griffith W., Jelinek C. J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 2007, 855:2-13.
10. Fenn J.B., Rosell J., Meng C.K. J. Am. Soc. Mass Spectrom. 1997, 8:1147-1157.
11. Ekegren T., Hanrieder J., Bergquist J. J. Mass Spectrom. 2008, 43:559-571.
12. Portelius E., Zetterberg H., Gobom J., Andreasson U., Blennow K. Expert Rev. Proteomics 2008, 5:225-237.
13. Portelius E., Tran A.J., Andreasson U., Persson R., Brinkmalm G., Zetterberg H., Blennow K., Westman-Brinkmalm A. J. Proteome Res. 2007, 6:4433-4439.
14. Vigo-Pelfrey C., Lee D., Keim P., Lieberburg I., Schenk D.B. J. Neurochem. 1993, 61:1965-1968.
15. Portelius E., Price E., Brinkmalm G., Stiteler M., Olsson M., Persson R., Westman-Brinkmalm A., Zetterberg H., Simon A.J., Blennow K. Neurobiol. Aging 2011, 32:1090-1098.
16. Portelius E., Bogdanovic N., Gustavsson M.K., Volkmann I., Brinkmalm G., Zetterberg H., Winblad B., Blennow K. Acta Neuropathol. 2010, 120:185-193.
17. Tekirian T.L. J. Alzheimers Dis. 2001, 3:241-248.
18. Halim A., Brinkmalm G., Ruetschi U., Westman-Brinkmalm A., Portelius E., Zetterberg H., Blennow K., Larson G., Nilsson J. Proc. Natl. Acad. Sci. USA 2011, 108:11848-11853.
19. Portelius E., Westman-Brinkmalm A., Zetterberg H., Blennow K. J. Proteome Res. 2006, 5:1010-1016.
20. Hoke S.H., Morand K.L., Greis K.D., Baker T.R., Harbol K.L., Dobson R.L.M. Int. J. Mass Spectrom. 2001, 212:135-196.
21. Kostiainen R., Kotiaho T., Kuuranne T., Auriola S. J. Mass Spectrom. 2003, 38:357-372.
22. Carr S.A., Addona T.A., Abbatiello S.E., Schilling B., Skates S.J., Mani D.R., Bunk D.M., Spiegelman C.H., Zimmerman L.J., Ham A.J.L., Keshishian H., Hall S.C., Allen S., Blackman R.K., Borchers C.H., Buck C., Cardasis H.L., Cusack M.P., Dodder N.G., Gibson B.W., Held J.M., Hiltke T., Jackson A., Johansen E.B., Kinsinger C.R., Li J., Mesri M., Neubert T.A., Niles R.K., Pulsipher T.C., Ransohoff D., Rodriguez H., Rudnick P.A., Smith D., Tabb D.L., Tegeler T.J., Variyath A.M., Vega-Montoto L.J., Wahlander A., Waldemarson S., Wang M., Whiteaker J.R., Zhao L., Anderson N.L., Fisher S.J., Liebler D.C., Paulovich A.G., Regnier F.E., Tempst P. Nat. Biotechnol. 2009, 27. 633-U85.
23. Prakash A., Tomazela D.M., Frewen B., MacLean B., Merrihew G., Peterman S., MacCoss M.J. J. Proteome Res. 2009, 8:2733-2739.
24. R. Kiyonami, A. Schoen, A. Prakash, S. Peterman, V. Zabrouskov, P. Picotti, R. Aebersold, A. Huhmer, B. Domon, Mol Cell Proteomics (2011) 10, M110 002931.
25. Eriksson L., Johansson E., Kettaneh-Wold N., Trygg J., Wikström C., Wold S. Multi- and Megavariate Data Analysis Part I, Umeå. 2006.
26. Eriksson L., Johansson E., Kettaneh-Wold N., Trygg J., Wikström C., Wold S. Multi- and Megavariate Data Analysis Part II, Umetrics AB, Umeå. 2006.
27. Bylesjö M., Rantalainen M., Cloarec O., Nicholson J.K., Holmes E., Trygg J. J. Chemom. 2006, 20:341-351.
28. Craig-Schapiro R., Kuhn M., Xiong C., Pickering E.H., Liu J., Misko T.P., Perrin R.J., Bales K.R., Soares H., Fagan A.M., Holtzman D.M. PLoS ONE 2011, 6:e18850.
29. Blennow K., Hampel H., Weiner M., Zetterberg H. Nat. Rev. Neurol. 2011, 6:131-144.
30. Olsson A., Vanderstichele H., Andreasen N., De Meyer G., Wallin A., Holmberg B., Rosengren L., Vanmechelen E., Blennow K. Clin. Chem. 2005, 51:336-345.
31. Ray S., Britschgi M., Herbert C., Takeda-Uchimura Y., Boxer A., Blennow K., Friedman L.F., Galasko D.R., Jutel M., Karydas A., Kaye J.A., Leszek J., Miller B.L., Minthon L., Quinn J.F., Rabinovici G.D., Robinson W.H., Sabbagh M.N., So Y.T., Sparks D.L., Tabaton M., Tinklenberg J., Yesavage J.A., Tibshirani R., Wyss-Coray T. Nat. Med. 2007, 13:1359-1362.
32. Marksteiner J., Kemmler G., Weiss E.M., Knaus G., Ullrich C., Mechtcheriakov S., Oberbauer H., Auffinger S., Hinterholzl J., Hinterhuber H., Humpel C. Neurobiol. Aging 2011, 32:539-540.
33. Soares H.D., Chen Y., Sabbagh M., Roher A., Schrijvers E., Breteler M. Ann. N. Y. Acad. Sci. 2009, 1180:56-67.
34. Choi C., Jeong J.H., Jang J.S., Choi K., Lee J., Kwon J., Choi K.G., Lee J.S., Kang S.W. J. Clin. Neurol. 2008, 4:84-88.
35. Zhang J., Sokal I., Peskind E.R., Quinn J.F., Jankovic J., Kenney C., Chung K.A., Millard S.P., Nutt J.G., Montine T.J. Am. J. Clin. Pathol. 2008, 129:526-529.
36. O'Bryant S.E., Xiao G., Barber R., Reisch J., Doody R., Fairchild T., Adams P., Waring S., Diaz-Arrastia R. Arch. Neurol. 2010, 67:1077-1081.
37. öhrfelt A., Andreasson U., Simon A.J., Zetterberg Z., Edman å., Potter W., Holder D., Devanarayan V., Seeburger J., Smith A.D., Blennow K., Wallin A. Dement. Geriatr. Cogn. Disord. Extra 2011, 1:31-42.
38. Hu W.T., Chen-Plotkin A., Arnold S.E., Grossman M., Clark C.M., Shaw L.M., Pickering E., Kuhn M., Chen Y., McCluskey L., Elman L., Karlawish J., Hurtig H.I., Siderowf A., Lee V.M., Soares H., Trojanowski J.Q. Acta Neuropathol. 2010, 119:669-678.
39. Hu W.T., Chen-Plotkin A., Grossman M., Arnold S.E., Clark C.M., Shaw L.M., McCluskey L., Elman L., Hurtig H.I., Siderowf A., Lee V.M., Soares H., Trojanowski J.Q. Neurology 2010, 75:2079-2086.
40. O'Bryant S.E., Xiao G., Barber R., Reisch J., Hall J., Cullum C.M., Doody R., Fairchild T., Adams P., Wilhelmsen K., Diaz-Arrastia R. Dement. Geriatr. Cogn. Disord. 2011, 32:55-62.
41. Rosenberg G.A. Lancet Neurol. 2009, 8:205-216.
42. Stomrud E., Bjorkqvist M., Janciauskiene S., Minthon L., Hansson O. Alzheimers Res. Ther. 2010, 2:20.
43. Bjerke M., Zetterberg H., Edman A., Blennow K., Wallin A., Andreasson U. J. Alzheimers Dis. 2011.
44. Portelius E., Zetterberg H., Andreasson U., Brinkmalm G., Andreasen N., Wallin A., Westman-Brinkmalm A., Blennow K. Neurosci. Lett. 2006, 409:215-219.
45. Portelius E., Andreasson U., Ringman J.M., Buerger K., Daborg J., Buchhave P., Hansson O., Harmsen A., Gustavsson M.K., Hanse E., Galasko D., Hampel H., Blennow K., Zetterberg H. Mol. Neurodegener 2010, 5:2.
46. Portelius E., Dean R.A., Gustavsson M.K., Andreasson U., Zetterberg H., Siemers E., Blennow K. Alzheimers Res. Ther. 2010, 2:7.
47. Lame M.E., Chambers E.E., Blatnik M. Anal. Biochem. 2011, 419:133-139.
48. Oe T., Ackermann B.L., Inoue K., Berna M.J., Garner C.O., Gelfanova V., Dean R.A., Siemers E.R., Holtzman D.M., Farlow M.R., Blair I.A. Rapid Commun. Mass Spectrom. 2006, 20:3723-3735.
49. Bateman R.J., Munsell L.Y., Morris J.C., Swarm R., Yarasheski K.E., Holtzman D.M. Nat. Med. 2006, 12:856-861.
50. Bateman R.J., Siemers E.R., Mawuenyega K.G., Wen G., Browning K.R., Sigurdson W.C., Yarasheski K.E., Friedrich S.W., Demattos R.B., May P.C., Paul S.M., Holtzman D.M. Ann. Neurol. 2009, 66:48-54.