-
1
-
-
2642709177
-
Declining morbidity and mortality among patients with advanced human immunodeficiency virus infection
-
Palella FJ Jr, Delaney KM, Moorman AC, Loveless MO, Fuhrer J, et al. (1998) Declining morbidity and mortality among patients with advanced human immunodeficiency virus infection. New England Journal of Medicine 338: 853-860.
-
(1998)
New England Journal of Medicine
, vol.338
, pp. 853-860
-
-
Palella Jr., F.J.1
Delaney, K.M.2
Moorman, A.C.3
Loveless, M.O.4
Fuhrer, J.5
-
2
-
-
0034615972
-
HIV-1 nomenclature proposal
-
Robertson D, Anderson J, Bradac J, Carr J, Foley B, et al. (2000) HIV-1 nomenclature proposal. Science 288: 55.
-
(2000)
Science
, vol.288
, pp. 55
-
-
Robertson, D.1
Anderson, J.2
Bradac, J.3
Carr, J.4
Foley, B.5
-
3
-
-
37349080586
-
Global molecular epidemiology of HIV: understanding the genesis of AIDS pandemic
-
Takebe Y, Uenishi R, Li X, (2008) Global molecular epidemiology of HIV: understanding the genesis of AIDS pandemic. Advances in Pharmacology 56: 1-25.
-
(2008)
Advances in Pharmacology
, vol.56
, pp. 1-25
-
-
Takebe, Y.1
Uenishi, R.2
Li, X.3
-
4
-
-
0038018282
-
Viral sex: The nature of AIDS
-
Oxford University Press, USA
-
Goudsmit J, (1997) Viral sex: The nature of AIDS. Oxford University Press, USA. p.
-
(1997)
-
-
Goudsmit, J.1
-
5
-
-
0035306998
-
National surveillance of HIV-1 subtypes for England and Wales: design, methods, and initial findings
-
Parry JV, Murphy G, Barlow KL, Lewis K, Rogers PA, et al. (2001) National surveillance of HIV-1 subtypes for England and Wales: design, methods, and initial findings. JAIDS Journal of Acquired Immune Deficiency Syndromes 26: 381.
-
(2001)
JAIDS Journal of Acquired Immune Deficiency Syndromes
, vol.26
, pp. 381
-
-
Parry, J.V.1
Murphy, G.2
Barlow, K.L.3
Lewis, K.4
Rogers, P.A.5
-
6
-
-
35348944475
-
Increasing prevalence of HIV-1 subtype A in Greece: estimating epidemic history and origin
-
Paraskevis D, Magiorkinis E, Magiorkinis G, Sypsa V, Paparizos V, et al. (2007) Increasing prevalence of HIV-1 subtype A in Greece: estimating epidemic history and origin. Journal of Infectious Diseases 196: 1167.
-
(2007)
Journal of Infectious Diseases
, vol.196
, pp. 1167
-
-
Paraskevis, D.1
Magiorkinis, E.2
Magiorkinis, G.3
Sypsa, V.4
Paparizos, V.5
-
9
-
-
0027219687
-
Phylogenetic analysis of gag genes from 70 international HIV-1 isolates provides evidence for multiple genotypes
-
Louwagie J, McCutchan FE, Peeters M, Brennan TP, Sanders-Buell E, et al. (1993) Phylogenetic analysis of gag genes from 70 international HIV-1 isolates provides evidence for multiple genotypes. Aids 7: 769.
-
(1993)
Aids
, vol.7
, pp. 769
-
-
Louwagie, J.1
McCutchan, F.E.2
Peeters, M.3
Brennan, T.P.4
Sanders-Buell, E.5
-
10
-
-
0028038231
-
Genetic and phylogenetic analysis of env subtypes G and H in Central Africa
-
Janssens W, Heyndrickx L, Fransen K, Motte J, Peeters M, et al. (1994) Genetic and phylogenetic analysis of env subtypes G and H in Central Africa. AIDS Research and Human Retroviruses 10: 877-879.
-
(1994)
AIDS Research and Human Retroviruses
, vol.10
, pp. 877-879
-
-
Janssens, W.1
Heyndrickx, L.2
Fransen, K.3
Motte, J.4
Peeters, M.5
-
11
-
-
0029102137
-
Genetic analysis of human immunodeficiency virus type 1 strains from patients in Cyprus: identification of a new subtype designated subtype I
-
Kostrikis LG, Bagdades E, Cao Y, Zhang L, Dimitriou D, et al. (1995) Genetic analysis of human immunodeficiency virus type 1 strains from patients in Cyprus: identification of a new subtype designated subtype I. Journal of Virology 69: 6122.
-
(1995)
Journal of Virology
, vol.69
, pp. 6122
-
-
Kostrikis, L.G.1
Bagdades, E.2
Cao, Y.3
Zhang, L.4
Dimitriou, D.5
-
12
-
-
0028978728
-
Yet another subtype of HIV type 1?
-
Leitner T, Alaeus A, Marquina S, Lilja E, Lidman K, et al. (1995) Yet another subtype of HIV type 1? AIDS Research and Human Retroviruses 11: 995-997.
-
(1995)
AIDS Research and Human Retroviruses
, vol.11
, pp. 995-997
-
-
Leitner, T.1
Alaeus, A.2
Marquina, S.3
Lilja, E.4
Lidman, K.5
-
13
-
-
20244374797
-
Near-full-length genome sequencing of divergent African HIV type 1 subtype F viruses leads to the identification of a new HIV type 1 subtype designated K
-
Triques K, Bourgeois A, Vidal N, Mpoudi-Ngole E, Mulanga-Kabeya C, et al. (2000) Near-full-length genome sequencing of divergent African HIV type 1 subtype F viruses leads to the identification of a new HIV type 1 subtype designated K. AIDS Research and Human Retroviruses 16: 139-151.
-
(2000)
AIDS Research and Human Retroviruses
, vol.16
, pp. 139-151
-
-
Triques, K.1
Bourgeois, A.2
Vidal, N.3
Mpoudi-Ngole, E.4
Mulanga-Kabeya, C.5
-
14
-
-
0031743285
-
An isolate of human immunodeficiency virus type 1 originally classified as subtype I represents a complex mosaic comprising three different group M subtypes (A, G, and I)
-
Gao F, Robertson DL, Carruthers CD, Li Y, Bailes E, et al. (1998) An isolate of human immunodeficiency virus type 1 originally classified as subtype I represents a complex mosaic comprising three different group M subtypes (A, G, and I). Journal of Virology 72: 10234.
-
(1998)
Journal of Virology
, vol.72
, pp. 10234
-
-
Gao, F.1
Robertson, D.L.2
Carruthers, C.D.3
Li, Y.4
Bailes, E.5
-
15
-
-
3142681466
-
A web-based genotyping resource for viral sequences
-
Rozanov M, Plikat U, Chappey C, Kochergin A, Tatusova T, (2004) A web-based genotyping resource for viral sequences. Nucleic Acids Research 32: W654.
-
(2004)
Nucleic Acids Research
, vol.32
-
-
Rozanov, M.1
Plikat, U.2
Chappey, C.3
Kochergin, A.4
Tatusova, T.5
-
16
-
-
2642513126
-
Development of a novel human immunodeficiency virus type 1 subtyping tool, Subtype Analyzer (STAR): analysis of subtype distribution in London
-
Gale CV, Myers R, Tedder RS, Williams IG, Kellam P, (2004) Development of a novel human immunodeficiency virus type 1 subtyping tool, Subtype Analyzer (STAR): analysis of subtype distribution in London. AIDS Research and Human Retroviruses 20: 457-464.
-
(2004)
AIDS Research and Human Retroviruses
, vol.20
, pp. 457-464
-
-
Gale, C.V.1
Myers, R.2
Tedder, R.S.3
Williams, I.G.4
Kellam, P.5
-
17
-
-
24144500828
-
A statistical model for HIV-1 sequence classification using the subtype analyser (STAR)
-
Myers R, Gale C, Harrison A, Takeuchi Y, Kellam P, (2005) A statistical model for HIV-1 sequence classification using the subtype analyser (STAR). Bioinformatics 21: 3535.
-
(2005)
Bioinformatics
, vol.21
, pp. 3535
-
-
Myers, R.1
Gale, C.2
Harrison, A.3
Takeuchi, Y.4
Kellam, P.5
-
18
-
-
52649083081
-
Classification of hepatitis C virus and human immunodeficiency virus-1 sequences with the branching index
-
Hraber P, Kuiken C, Waugh M, Geer S, Bruno WJ, et al. (2008) Classification of hepatitis C virus and human immunodeficiency virus-1 sequences with the branching index. Journal of General Virology 89: 2098.
-
(2008)
Journal of General Virology
, vol.89
, pp. 2098
-
-
Hraber, P.1
Kuiken, C.2
Waugh, M.3
Geer, S.4
Bruno, W.J.5
-
19
-
-
75149150883
-
Using genomic signatures for HIV-1 sub-typing
-
Pandit A, Sinha S, (2010) Using genomic signatures for HIV-1 sub-typing. BMC Bioinformatics 11: S26.
-
(2010)
BMC Bioinformatics
, vol.11
-
-
Pandit, A.1
Sinha, S.2
-
20
-
-
77953890013
-
HIV classification using the coalescent theory
-
Bulla I, Schultz AK, Schreiber F, Zhang M, Leitner T, et al. (2010) HIV classification using the coalescent theory. Bioinformatics 26: 1409.
-
(2010)
Bioinformatics
, vol.26
, pp. 1409
-
-
Bulla, I.1
Schultz, A.K.2
Schreiber, F.3
Zhang, M.4
Leitner, T.5
-
21
-
-
0028181441
-
Hidden Markov models in computational biology. Applications to protein modeling
-
Krogh A, Brown M, Mian IS, Sjolander K, Haussler D, (1994) Hidden Markov models in computational biology. Applications to protein modeling. Journal of Molecular Biology 235: 1501-1531.
-
(1994)
Journal of Molecular Biology
, vol.235
, pp. 1501-1531
-
-
Krogh, A.1
Brown, M.2
Mian, I.S.3
Sjolander, K.4
Haussler, D.5
-
22
-
-
0003516147
-
Biological sequence analysis: Probabilistic models of proteins and nucleic acids
-
Cambridge University Press
-
Durbin R, Eddy SR, Krogh A, Mitchison G, (1998) Biological sequence analysis: Probabilistic models of proteins and nucleic acids. Cambridge University Press.
-
(1998)
-
-
Durbin, R.1
Eddy, S.R.2
Krogh, A.3
Mitchison, G.4
-
23
-
-
0031743421
-
Profile hidden Markov models
-
Eddy SR, (1998) Profile hidden Markov models. Bioinformatics 14: 755.
-
(1998)
Bioinformatics
, vol.14
, pp. 755
-
-
Eddy, S.R.1
-
24
-
-
0032438987
-
Hidden Markov models for detecting remote protein homologies
-
Karplus K, Barrett C, Hughey R, (1998) Hidden Markov models for detecting remote protein homologies. Bioinformatics 14: 846.
-
(1998)
Bioinformatics
, vol.14
, pp. 846
-
-
Karplus, K.1
Barrett, C.2
Hughey, R.3
-
25
-
-
71749113479
-
Riboswitch detection using profile hidden Markov models
-
Singh P, Bandyopadhyay P, Bhattacharya S, Krishnamachari A, Sengupta S, (2009) Riboswitch detection using profile hidden Markov models. BMC Bioinformatics 10: 325.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 325
-
-
Singh, P.1
Bandyopadhyay, P.2
Bhattacharya, S.3
Krishnamachari, A.4
Sengupta, S.5
-
26
-
-
33746715541
-
A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes
-
Schultz AK, Zhang M, Leitner T, Kuiken C, Korber B, et al. (2006) A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes. BMC Bioinformatics 7: 265.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 265
-
-
Schultz, A.K.1
Zhang, M.2
Leitner, T.3
Kuiken, C.4
Korber, B.5
-
27
-
-
67849084998
-
jpHMM: Improving the reliability of recombination prediction in HIV-1
-
Schultz AK, Zhang M, Bulla I, Leitner T, Korber B, et al. (2009) jpHMM: Improving the reliability of recombination prediction in HIV-1. Nucleic Acids Research W647-W651: 37.
-
(2009)
Nucleic Acids Research
-
-
Schultz, A.K.1
Zhang, M.2
Bulla, I.3
Leitner, T.4
Korber, B.5
-
28
-
-
0032889281
-
Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination
-
Lole KS, Bollinger RC, Paranjape RS, Gadkari D, Kulkarni SS, et al. (1999) Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J. Virol. 73 (1): 152-160.
-
(1999)
J. Virol
, vol.73
, Issue.1
, pp. 152-160
-
-
Lole, K.S.1
Bollinger, R.C.2
Paranjape, R.S.3
Gadkari, D.4
Kulkarni, S.S.5
-
29
-
-
79955973961
-
More accurate recombination prediction in HIV-1 using a robust decoding algorithm for HMMs
-
Truszkowski J, Brown DG, (2011) More accurate recombination prediction in HIV-1 using a robust decoding algorithm for HMMs. BMC Bioinformatics 12: 168.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 168
-
-
Truszkowski, J.1
Brown, D.G.2
-
30
-
-
63549098393
-
Accurate Detection of Recombinant Breakpoints in Whole-Genome Alignments
-
Westesson O, Homes I, (2011) Accurate Detection of Recombinant Breakpoints in Whole-Genome Alignments. PLoS Computational Biology 5 (3): e1000318.
-
(2011)
PLoS Computational Biology
, vol.5
, Issue.3
-
-
Westesson, O.1
Homes, I.2
-
32
-
-
77950788916
-
Characterization and frequency of a newly identified HIV-1 BF1 intersubtype circulating recombinant form in São Paulo, Brazil
-
Sanabani SS, Pastena E, Neto WK, Martinez VP, Sabino EC, (2010) Characterization and frequency of a newly identified HIV-1 BF1 intersubtype circulating recombinant form in São Paulo, Brazil. Virol J 7: 74.
-
(2010)
Virol J
, vol.7
, pp. 74
-
-
Sanabani, S.S.1
Pastena, E.2
Neto, W.K.3
Martinez, V.P.4
Sabino, E.C.5
-
33
-
-
33750246313
-
Characterization of a new circulating recombinant form comprising HIV-1 subtypes C and B in southern Brazil
-
Santos AF, Sousa TM, Soares EAJM, Sanabani S, Martinez A, et al. (2006) Characterization of a new circulating recombinant form comprising HIV-1 subtypes C and B in southern Brazil. Aids 20: 2011.
-
(2006)
Aids
, vol.20
, pp. 2011
-
-
Santos, A.F.1
Sousa, T.M.2
Soares, E.A.J.M.3
Sanabani, S.4
Martinez, A.5
-
34
-
-
23044497400
-
Identification of a novel HIV-1 complex circulating recombinant form (CRF18_cpx) of Central African origin in Cuba
-
Thomson MM, Casado G, Posada D, Sierra M, Najera R, (2005) Identification of a novel HIV-1 complex circulating recombinant form (CRF18_cpx) of Central African origin in Cuba. Aids 19 (11): 1155-1163.
-
(2005)
Aids
, vol.19
, Issue.11
, pp. 1155-1163
-
-
Thomson, M.M.1
Casado, G.2
Posada, D.3
Sierra, M.4
Najera, R.5
-
35
-
-
38149070858
-
Identification of two new CRF_BF in Rio de Janeiro State, Brazil
-
Guimarães ML, Eyer-Silva WA, Couto-Fernandez JC, Morgado MG, (2008) Identification of two new CRF_BF in Rio de Janeiro State, Brazil. Aids 22 (3): 433-435.
-
(2008)
Aids
, vol.22
, Issue.3
, pp. 433-435
-
-
Guimarães, M.L.1
Eyer-Silva, W.A.2
Couto-Fernandez, J.C.3
Morgado, M.G.4
-
36
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC, (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 1792.
-
(2004)
Nucleic Acids Research
, vol.32
, pp. 1792
-
-
Edgar, R.C.1
|