-
1
-
-
34547761762
-
Recombination confounds the early evolutionary history of human immunodeficiency virus type 1 subtype G is a circulating recombinant form
-
Abecasis, A.B. et al. (2007) Recombination confounds the early evolutionary history of human immunodeficiency virus type 1: subtype G is a circulating recombinant form. J. Virol., 81, 8543-8551.
-
(2007)
J. Virol.
, vol.81
, pp. 8543-8551
-
-
Abecasis, A.B.1
-
2
-
-
1342309210
-
Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference
-
Altekar, G. et al. (2004) Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics, 20, 407-415.
-
(2004)
Bioinformatics
, vol.20
, pp. 407-415
-
-
Altekar, G.1
-
3
-
-
0033766134
-
Testing the hypothesis of a recombinant origin of human immunodeficiency virus type 1 subtype E
-
Anderson, J.P. et al. (2000) Testing the hypothesis of a recombinant origin of human immunodeficiency virus type 1 subtype E. J. Virol., 74, 10752-10765.
-
(2000)
J. Virol.
, vol.74
, pp. 10752-10765
-
-
Anderson, J.P.1
-
4
-
-
0038047665
-
Hybrid origin of SIV in chimpanzees
-
Bailes, E. et al. (2003) Hybrid origin of SIV in chimpanzees. Science, 300, 1713.
-
(2003)
Science
, vol.300
, pp. 1713
-
-
Bailes, E.1
-
5
-
-
0026464671
-
Transfection-mediated recombination of influenza A virus
-
Bergmann, M. et al. (1992) Transfection-mediated recombination of influenza A virus. J. Virol., 66, 7576-7580.
-
(1992)
J. Virol.
, vol.66
, pp. 7576-7580
-
-
Bergmann, M.1
-
6
-
-
0035837053
-
The Whitewater Arroyo virus: natural evidence for genetic recombination among Tacaribe serocomplex viruses (family Arenaviridae)
-
Charrel, R.N. et al. (2001) The Whitewater Arroyo virus: natural evidence for genetic recombination among Tacaribe serocomplex viruses (family Arenaviridae). Virology, 283, 161-166.
-
(2001)
Virology
, vol.283
, pp. 161-166
-
-
Charrel, R.N.1
-
7
-
-
27544496497
-
An automated genotyping system for analysis of HIV-1 and other microbial sequences
-
de Oliveira, T. et al. (2005) An automated genotyping system for analysis of HIV-1 and other microbial sequences. Bioinformatics, 21, 3797-3800.
-
(2005)
Bioinformatics
, vol.21
, pp. 3797-3800
-
-
de Oliveira, T.1
-
8
-
-
0034769889
-
Recombinationandthepopulationstructuresofbacterial pathogens
-
Feil, E.J.andSpratt, B.G.(2001)Recombinationandthepopulationstructuresofbacterial pathogens. Annu. Rev. Microbiol., 55, 561-590.
-
(2001)
Annu. Rev. Microbiol.
, vol.55
, pp. 561-590
-
-
Feil, E.J.1
Spratt, B.G.2
-
9
-
-
77953877368
-
We're not as confused as we may think we are: HIV nomenclature and classification in comparison to the nomenclature and classification of other viruses and bacteria
-
Santa Fe, NM
-
Foley, B. and Fauquet, C. (2008) We're not as confused as we may think we are: HIV nomenclature and classification in comparison to the nomenclature and classification of other viruses and bacteria. 15th International HIV Dynamics & Evolution meeting, Santa Fe, NM.
-
(2008)
15th International HIV Dynamics & Evolution meeting
-
-
Foley, B.1
Fauquet, C.2
-
10
-
-
13744251729
-
Genetic diversity, recombination and cryptic clades in Pseudomonas viridiflava infecting natural populations of Arabidopsis thaliana
-
Goss, E.M. et al. (2005) Genetic diversity, recombination and cryptic clades in Pseudomonas viridiflava infecting natural populations of Arabidopsis thaliana. Genetics, 169, 21-35.
-
(2005)
Genetics
, vol.169
, pp. 21-35
-
-
Goss, E.M.1
-
11
-
-
0000557367
-
An ancestral recombination graph
-
Donnelly, P. and Tavaré, S. (eds) Springer, New York
-
Griffiths, R.C. and Marjoram, P. (1997)An ancestral recombination graph. In Donnelly, P. and Tavaré, S. (eds) Progress in Population Genetics and Human Evolution. Springer, New York, pp. 257-270.
-
(1997)
Progress in Population Genetics and Human Evolution
, pp. 257-270
-
-
Griffiths, R.C.1
Marjoram, P.2
-
12
-
-
2842533773
-
Western equine encephalitis virus is a recombinant virus
-
Hahn, C.S. et al. (1988) Western equine encephalitis virus is a recombinant virus. Proc. Natl Acad. Sci. USA, 85, 5997-6001.
-
(1988)
Proc. Natl Acad. Sci. USA
, vol.85
, pp. 5997-6001
-
-
Hahn, C.S.1
-
14
-
-
0020744702
-
Properties of a neutral allele model with intragenic recombination
-
Hudson, R.R. (1983) Properties of a neutral allele model with intragenic recombination. Theor. Popul. Biol., 23, 183-201.
-
(1983)
Theor. Popul. Biol.
, vol.23
, pp. 183-201
-
-
Hudson, R.R.1
-
15
-
-
0001935493
-
Gene genealogies and the coalescent process
-
Futuyama, J.A.D. (ed.) Oxford University Press, Oxford
-
Hudson, R. R. (1990) Gene genealogies and the coalescent process. In Futuyama, J.A.D. (ed.) Oxford Surveys in Evolutionary Biology. Vol. 7, Oxford University Press, Oxford, pp. 1-44.
-
(1990)
Oxford Surveys in Evolutionary Biology
, vol.7
, pp. 1-44
-
-
Hudson, R.R.1
-
16
-
-
0026623162
-
Poliovirus RNA recombination: mechanistic studies in the absence of selection
-
Jarvis, T.C. and Kirkegaard, K. (1992) Poliovirus RNA recombination: mechanistic studies in the absence of selection. Virology, 11, 3135-3145.
-
(1992)
Virology
, vol.11
, pp. 3135-3145
-
-
Jarvis, T.C.1
Kirkegaard, K.2
-
18
-
-
0002556819
-
On the genealogy of large populations
-
Kingman, J.F.C. (1982b) On the genealogy of large populations. J. Appl. Probab., 19A, 27-43.
-
(1982)
J. Appl. Probab.
, vol.19 A
, pp. 27-43
-
-
Kingman, J.F.C.1
-
19
-
-
33645108873
-
LAMARC 2 0: maximum likelihood and Bayesian estimation of population parameters
-
Kuhner, M.K. (2006) LAMARC 2.0: maximum likelihood and Bayesian estimation of population parameters. Bioinformatics, 22, 768-770.
-
(2006)
Bioinformatics
, vol.22
, pp. 768-770
-
-
Kuhner, M.K.1
-
20
-
-
0033756316
-
Maximum likelihood estimation of recombination rates from population data
-
Kuhner, M.K. et al. (2000) Maximum likelihood estimation of recombination rates from population data. Genetics, 156, 1393-1401.
-
(2000)
Genetics
, vol.156
, pp. 1393-1401
-
-
Kuhner, M.K.1
-
21
-
-
0026602984
-
RNA recombination in animal and plant viruses
-
Lai, M.M. (1992) RNA recombination in animal and plant viruses. Microbiol. Mol. Biol. Rev., 56, 61-79.
-
(1992)
Microbiol. Mol. Biol. Rev.
, vol.56
, pp. 61-79
-
-
Lai, M.M.1
-
23
-
-
65949117838
-
Identifying recombinants in human and primate immunodeficiency virus sequence alignments using quartet scanning
-
Lemey, P. et al. (2009) Identifying recombinants in human and primate immunodeficiency virus sequence alignments using quartet scanning. BMC Bioinformatics, 10, 126.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 126
-
-
Lemey, P.1
-
24
-
-
0032889281
-
Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination
-
Lole, K.S. et al. (1999) Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J. Virology, 73, 152-160.
-
(1999)
J. Virology
, vol.73
, pp. 152-160
-
-
Lole, K.S.1
-
25
-
-
28044464255
-
Recombination in circulating Human enterovirus B: independent evolution of structural and non-structural genome regions
-
Lukashev, A.N. et al. (2005) Recombination in circulating Human enterovirus B: independent evolution of structural and non-structural genome regions. J. Gen. Virol., 86, 3281-3290.
-
(2005)
J. Gen. Virol.
, vol.86
, pp. 3281-3290
-
-
Lukashev, A.N.1
-
26
-
-
33646154660
-
Recco: recombination analysis using cost optimization
-
Maydt, J. and Lengauer, T. (2006) Recco: recombination analysis using cost optimization. Bioinformatics, 22, 1064-1071.
-
(2006)
Bioinformatics
, vol.22
, pp. 1064-1071
-
-
Maydt, J.1
Lengauer, T.2
-
27
-
-
0028086229
-
Nonhomologous recombination between the hemagglutinin gene and the nucleoprotein gene of an influenza virus
-
Orlich, M. et al. (1994) Nonhomologous recombination between the hemagglutinin gene and the nucleoprotein gene of an influenza virus. Virology, 204, 462-465.
-
(1994)
Virology
, vol.204
, pp. 462-465
-
-
Orlich, M.1
-
28
-
-
0347989161
-
The causes and consequences of HIV evolution
-
Rambaut, A. et al. (2004) The causes and consequences of HIV evolution. Nat. Rev. Genet., 5, 52-61.
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 52-61
-
-
Rambaut, A.1
-
29
-
-
0034615972
-
HIV-1 nomenclature proposal
-
Robertson, D.L. et al. (2000) HIV-1 nomenclature proposal. Science, 288, 55-57.
-
(2000)
Science
, vol.288
, pp. 55-57
-
-
Robertson, D.L.1
-
30
-
-
33746715541
-
A jumping profile hidden Markov model and applications to recombination sites in HIV and HCV genomes
-
Schultz, A.-K. et al. (2006) A jumping profile hidden Markov model and applications to recombination sites in HIV and HCV genomes. BMC Bioinformatics, 7, 265.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 265
-
-
Schultz, A.-K.1
-
31
-
-
0018098778
-
Recombinant avian oncoviruses I Alterations in the precursor to the internal structural proteins
-
Shaikh, R. et al. (1978) Recombinant avian oncoviruses I. Alterations in the precursor to the internal structural proteins. Virology, 87, 326-338.
-
(1978)
Virology
, vol.87
, pp. 326-338
-
-
Shaikh, R.1
-
32
-
-
0032889313
-
Recombination in Tula hantavirus evolution: analysis of genetic lineages from Slovakia
-
Sibold, C. et al. (1999) Recombination in Tula hantavirus evolution: analysis of genetic lineages from Slovakia. J. Virol., 73, 667-675.
-
(1999)
J. Virol.
, vol.73
, pp. 667-675
-
-
Sibold, C.1
-
33
-
-
0036940872
-
A novel approach to remote homology detection: jumping alignments
-
Spang, R. et al. (2002) A novel approach to remote homology detection: jumping alignments. J. Comput. Biol., 9, 747-760.
-
(2002)
J. Comput. Biol.
, vol.9
, pp. 747-760
-
-
Spang, R.1
-
35
-
-
0033150745
-
Recombination as a point process along sequences
-
Wiuf, C. and Hein, J. (1999) Recombination as a point process along sequences. Theor. Popul. Biol., 55, 248-259.
-
(1999)
Theor. Popul. Biol.
, vol.55
, pp. 248-259
-
-
Wiuf, C.1
Hein, J.2
-
36
-
-
0033594983
-
Widespread intra-serotype recombination in natural populations of dengue virus
-
Worobey, M. et al. (1999) Widespread intra-serotype recombination in natural populations of dengue virus. Proc. Natl Acad. Sci. USA, 96, 7352-7357.
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 7352-7357
-
-
Worobey, M.1
-
37
-
-
33747863901
-
jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1
-
Zhang, M. et al. (2006) jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1. Nucleic Acids Res., 34, W463-W465.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Zhang, M.1
-
38
-
-
0036827628
-
Human immunodeficiency virus type 1 recombination: rate, fidelity, and putative hot spots
-
11273-11282
-
Zhuang, J. et al. (2002) Human immunodeficiency virus type 1 recombination: rate, fidelity, and putative hot spots. J. Virol., 76, 11273-11282.
-
(2002)
J. Virol.
, vol.76
-
-
Zhuang, J.1
|