Replication protein A unfolds G-quadruplex structures with varying degrees of efficiency

Journal of Physical Chemistry B

Volumn 116, Issue 19, 2012, Pages 5588-5594

  Qureshi, Mohammad H ^a   Ray, Sujay ^a   Sewell, Abby L ^a   Basu, Soumitra ^a   Balci, Hamza ^a  

^a KENT STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; ENERGY TRANSFER; GENES; MOLECULES; PROTEINS;

BIOCHEMICAL EXPERIMENTS; CELLULAR ENVIRONMENT; FLUORESCENCE RESONANCE ENERGY TRANSFER; G-QUADRUPLEX STRUCTURE; G-QUADRUPLEXES; LIMITING STEP; PROMOTER REGION; PROTEIN-DNA INTERACTIONS; REPLICATION PROTEIN A; SINGLE-MOLECULE; STOPPED-FLOW METHOD; THERMALLY STABLE; TYROSINE HYDROXYLASE;

THERMODYNAMIC STABILITY;

DNA; GUANINE QUADRUPLEX; REPLICATION FACTOR A; TYROSINE 3 MONOOXYGENASE;

ARTICLE; CHEMISTRY; CIRCULAR DICHROISM; DNA CONTAMINATION; DNA FOOTPRINTING; FLUORESCENCE RESONANCE ENERGY TRANSFER; FREEZING; GENETICS; HUMAN; PROMOTER REGION; TELOMERE; THERMODYNAMICS; TIME; ULTRAVIOLET RADIATION;

CIRCULAR DICHROISM; DNA; DNA CONTAMINATION; DNA FOOTPRINTING; FLUORESCENCE RESONANCE ENERGY TRANSFER; FREEZING; G-QUADRUPLEXES; HUMANS; PROMOTER REGIONS, GENETIC; REPLICATION PROTEIN A; TELOMERE; THERMODYNAMICS; TIME FACTORS; TYROSINE 3-MONOOXYGENASE; ULTRAVIOLET RAYS;

EID: 84862069138     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp300546u     Document Type: Article

References (45)

1. Blackburn, E. H. Nature 1991, 350, 569-573
2. Gellert, M.; Lipsett, M. N.; Davies, D. R. Proc. Natl. Acad. Sci. U.S.A. 1962, 48, 2013-2018
3. Gilbert, D. E.; Feigon, J. Curr. Opin. Struct. Biol. 1999, 9, 305-314
4. Williamson, J. R. Annu. Rev. Biophys. Biomol. Struct. 1994, 23, 703-730
5. Burge, S.; Parkinson, G. N.; Hazel, P.; Todd, A. K.; Neidle, S. Nucleic Acids Res. 2006, 34, 5402-5415
6. Eddy, J.; Maizels, N. Nucleic Acids Res. 2006, 34, 3887-3896
7. Eddy, J.; Maizels, N. Nucleic Acids Res. 2008, 36, 1321-1333
8. Huppert, J. L.; Balasubramanian, S. Nucleic Acids Res. 2005, 33, 2908-2916
9. Huppert, J. L.; Balasubramanian, S. Nucleic Acids Res. 2007, 35, 406-413
10. Todd, A.; Johnston, M.; Neidle, S. Nucleic Acids Res. 2005, 33, 2901-2907
11. Du, Z.; Zhao, Y.; Li, N. Genome Res. 2008, 18, 233-241
12. Qin, Y.; Hurley, L. H. Biochimie 2008, 90, 1149-1171
13. Huppert, J. L.; Bugaut, A.; Kumari, S.; Balasubramanian, S. Nucleic Acids Res. 2008, 36, 6260-6268
14. Kumari, S.; Bugaut, A.; Huppert, J. L.; Balasubramanian, S. Nat. Chem. Biol. 2007, 3, 218-221
15. Morris, M. J.; Basu, S. Biochemistry 2009, 48, 5313-5319
16. Morris, M. J.; Negishi, Y.; Pazsint, C.; Schonhoft, J. D.; Basu, S. J. Am. Chem. Soc 2010, 132, 17831-17839
17. Balasubramanian, S.; Hurley, L. H.; Neidle, S. Nat. Rev. Drug Discov. 2011, 10, 261-275
18. Balasubramanian, S.; Neidle, S. Curr. Opin. Chem. Biol. 2009, 13, 345-353
19. Lipps, H. J.; Rhodes, D. Trends Cell Biol. 2009, 19, 414-422
20. Paeschke, K.; Capra, J. A.; Zakian, V. A. Cell 2011, 145, 678-691
21. Kumar, N.; Sahoo, B.; Varun, K. A.; Maiti, S. Nucleic Acids Res. 2008, 36, 4433-4442
22. Paeschke, K.; McDonald, K. R.; Zakian, V. A. FEBS Lett. 2010, 584, 3760-3772
23. Kim, C.; Wold, M. S. Biochemistry 1995, 34, 2058-2064
24. Oakley, G. G.; Patrick, S. M. Front Biosci. 2010, 15, 883-900
25. Wold, M. S. Annu. Rev. Biochem. 1997, 66, 61-92
26. Fan, J. H.; Bochkareva, E.; Bochkarev, A.; Gray, D. M. Biochemistry 2009, 48, 1099-1111
27. Lao, Y.; Lee, C. G.; Wold, M. S. Biochemistry 1999, 38, 3974-3984
28. Walther, A. P.; Gomes, X. V.; Lao, Y.; Lee, C. G.; Wold, M. S. Biochemistry 1999, 38, 3963-3973
29. Masuda-Sasa, T.; Polaczek, P.; Peng, X. P.; Chen, L.; Campbell, J. L. J. Biol. Chem. 2008, 283, 24359-24373
30. Salas, T. R.; Petruseva, I.; Lavrik, O.; Bourdoncle, A.; Mergny, J. L.; Favre, A.; Saintome, C. Nucleic Acids Res. 2006, 34, 4857-4865
31. Prakash, A.; Kieken, F.; Marky, L. A.; Borgstahl, G. E. J. Nucleic Acids 2011, 529828
32. Flynn, R. L.; Centore, R. C.; O'Sullivan, R. J.; Rai, R.; Tse, A.; Songyang, Z.; Chang, S.; Karlseder, J.; Zou, L. Nature 2011, 471, 532-536
33. Gao, H.; Cervantes, R. B.; Mandell, E. K.; Otero, J. H.; Lundblad, V. Nat. Struct. Mol. Biol. 2007, 14, 208-214
34. Gelinas, A. D.; Paschini, M.; Reyes, F. E.; Heroux, A.; Batey, R. T.; Lundblad, V.; Wuttke, D. S. Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 19298-19303
35. Guedin, A.; Gros, J.; Alberti, P.; Mergny, J. L. Nucleic Acids Res. 2010, 38, 7858-7868
36. Tran, P. L.; Mergny, J. L.; Alberti, P. Nucleic Acids Res. 2010, 39, 3282-3294
37. Romano, G.; Suon, S.; Jin, H.; Donaldson, A. E.; Iacovitti, L. J. Cell Physiol. 2005, 204, 666-677
38. Ambrus, A.; Chen, D.; Dai, J.; Bialis, T.; Jones, R. A.; Yang, D. Nucleic Acids Res. 2006, 34, 2723-2735
39. Phan, A. T. FEBS J. 2009, 277, 1107-1117
40. Masiero, S.; Trotta, R.; Pieraccini, S.; De Tito, S.; Perone, R.; Randazzo, A.; Spada, G. P. Org. Biomol. Chem. 2010, 8, 2683-2692
41. Sun, D.; Hurley, L. H. Methods Mol. Biol. 2010, 608, 65-79
42. Jena, P. V.; Shirude, P. S.; Okumus, B.; Laxmi-Reddy, K.; Godde, F.; Huc, I.; Balasubramanian, S.; Ha, T. J. Am. Chem. Soc. 2009, 131, 12522-12523
43. Lee, J. Y.; Okumus, B.; Kim, D. S.; Ha, T. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 18938-18943
44. Okumus, B.; Ha, T. Methods Mol. Biol. 2010, 608, 81-96
45. Cai, L.; Roginskaya, M.; Qu, Y.; Yang, Z.; Xu, Y.; Zou, Y. Biochemistry 2007, 46, 8226-8233