Multifaceted SlyD from Helicobacter pylori: Implication in [NiFe] hydrogenase maturation

Journal of Biological Inorganic Chemistry

Volumn 17, Issue 3, 2012, Pages 331-343

  Cheng, Tianfan ^a   Li, Hongyan ^a   Xia, Wei ^a   Sun, Hongzhe ^a  

^a UNIVERSITY OF HONG KONG   (Hong Kong)

Author keywords

Chaperone; Hydrogenase; NMR; Peptidylprolyl isomerase; SlyD

Indexed keywords

CHAPERONE; FK 506 BINDING PROTEIN; NICKEL; NICKEL IRON HYDROGENASE; PEPTIDYLPROLYL ISOMERASE; PROTEIN SLYD; UNCLASSIFIED DRUG; ZINC;

ALPHA HELIX; AMINO ACID SEQUENCE; ARTICLE; BETA SHEET; CARBOXY TERMINAL SEQUENCE; CONFORMATIONAL TRANSITION; DISSOCIATION CONSTANT; ENZYME ACTIVE SITE; HELICOBACTER PYLORI; METAL BINDING; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN FOLDING; PROTEIN PROCESSING;

CLONING, MOLECULAR; HELICOBACTER PYLORI; HUMANS; HYDROGENASE; IRON; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; MOLECULAR CHAPERONES; NICKEL; PROTEIN STRUCTURE, SECONDARY; SOLUTIONS; TACROLIMUS BINDING PROTEINS;

HELICOBACTER PYLORI;

EID: 84861911780     PISSN: 09498257     EISSN: 14321327     Source Type: Journal    
DOI: 10.1007/s00775-011-0855-y     Document Type: Article

References (56)

1. Kusters JG, van Vliet AHM, Kuipers EJ (2006) Clin Microbiol Rev 19:449-490
2. Evans DJ Jr, Evans DG, Kirkpatrick SS, Graham DY (1991) Microb Pathog 10:15-26
3. Maier RJ, Fu C, Gilbert J, Moshiri F, Olson J, Plaut AG (1996) FEMS Microbiol Lett 141:71-76
4. Benoit S, Maier RJ (2003) J Bacteriol 185:4787-4795
5. Mehta N, Olson JW, Maier RJ (2003) J Bacteriol 185:726-734
6. Stingl K, Schauer K, Ecobichon C, Labigne A, Lenormand P, Rousselle JC, Namane A, de Reuse H (2008) Mol Cell Proteomics 7:2429-2441
7. Olson JW, Mehta NS, Maier RJ (2001) Mol Microbiol 39:176-182
8. Löw C, Neumann P, Tidow H, Weininger U, Haupt C, Friedrich-Epler B, Scholz C, Stubbs MT, Balbach J (2010) J Mol Biol 398:375-390
9. Weininger U, Haupt C, Schweimer K, Graubner W, Kovermann M, Brüser T, Scholz C, Schaarschmidt P, Zoldak G, Schmid FX, Balbach J (2009) J Mol Biol 387:295-305
10. Martino L, He Y, Hands-Taylor KL, Valentine ER, Kelly G, Giancola C, Conte MR (2009) FEBS J 276:4529-4544
11. Suzuki R, Nagata K, Yumoto F, Kawakami M, Nemoto N, Furutani M, Adachi K, Maruyama T, Tanokura M (2003) J Mol Biol 328:1149-1160
12. Kay JE (1996) Biochem J 314:361-385
13. Zhang JW, Butland G, Greenblatt JF, Emili A, Zamble DB (2005) J Biol Chem 280:4360-4366
14. Roof WD, Fang HQ, Young KD, Sun JL, Young R (1997) Mol Microbiol 25:1031-1046
15. Benanti EL, Chivers PT (2009) J Bacteriol 191:2405-2408
16. Wülfing C, Lombardero J, Plückthun A (1994) J Biol Chem 269:2895-2901
17. Hottenrott S, Schumann T, Plückthun A, Fischer G, Rahfeld JU (1997) J Biol Chem 272:15697-15701
18. Mitterauer T, Nanoff C, Ahorn H, Freissmuth M, Hohenegger M (1999) Biochem J 342:33-39
19. Graubner W, Schierhorn A, Brüser T (2007) J Biol Chem 282:7116-7124
20. Ilver D, Rappuoli R, Telford JL (2001) In: Mobley HLT, Mendz GL, Hazell SL (eds) Helicobacter pylori: physiology and genetics. ASM Press, Washington, pp 219-226
21. Dalbey RE, Robinson C (1999) Trends Biochem Sci 24:17-22
22. Wickner W, Schekman R (2005) Science 310:1452-1456
23. Ge RG, Zhang Y, Sun XS, Watt RM, He QY, Huang JD, Wilcox DE, Sun HZ (2006) J Am Chem Soc 128:11330-11331
24. Ge RG, Watt RM, Sun XS, Tanner JA, He QY, Huang JD, Sun HZ (2006) Biochem J 393:285-293
25. Ge RG, Sun HZ (2007) Acc Chem Res 40:267-274
26. Zeng YB, Zhang DM, Li HY, Sun HZ (2008) J Biol Inorg Chem 13:1121-1131
27. Cun SJ, Li HY, Ge RG, Lin MCM, Sun HZ (2008) J Biol Chem 283:15142-15151
28. Xia W, Li H, Sze KH, Sun HZ (2009) J Am Chem Soc 131:10031-10040
29. Knappe TA, Eckert B, Schaarschmidt P, Scholz C, Schmid FX (2007) J Mol Biol 368:1458-1468
30. Maillard J, Spronk CAEM, Buchanan G, Lyall V, Richardson DJ, Palmer T, Vuister GW, Sargent F (2007) Proc Natl Acad Sci USA 104:15641-15646
31. Gill SC, von Hippel PH (1989) Anal Biochem 182:319-326
32. Delaglio F, Grzesiek S, Vuister GW, Zhu G, Pfeifer J, Bax A (1995) J Biomol NMR 6:277-293
33. Goddard TD, Kneller DG. SPARKY 3. University of California, San Francisco
34. Cornilescu G, Delaglio F, Bax A (1999) J Biomol NMR 13:289-302
35. Grzesiek S, Bax A, Clore GM, Gronenborn AM, Hu JS, Kaufman J, Palmer I, Stahl SJ, Wingfield PT (1996) Nat Struct Biol 3:340-345
36. Herrmann T, Güntert P, Wüthrich K (2002) J Mol Biol 319:209-227
37. Pearlman DA, Case DA, Caldwell JW, Ross WS, Cheatham TE, Debolt S, Ferguson D, Seibel G, Kollman P (1995) Comput Phys Commun 91:1-41
38. Laskowski RA, Rullmann JAC, MacArthur MW, Kaptein R, Thornton JM (1996) J Biomol NMR 8:477-486
39. Koradi R, Billeter M, Wüthrich K (1996) J Mol Graph 14:51-55
40. DeLano WL (2006) PyMOL, release 0.99rc6. DeLano Scientific, Palo Alto
41. Scholz C, Eckert B, Hagn F, Schaarschmidt P, Balbach J, Schmid FX (2006) Biochemistry 45:20-33
42. Van Duyne GD, Standaert RF, Karplus PA, Schreiber SL, Clardy J (1991) Science 252:839-842
43. Holm L, Park J (2000) Bioinformatics 16:566-567
44. Stibrany RT, Fox S, Bharadwaj PK, Schugar HJ, Potenza JA (2005) Inorg Chem 44:8234-8242
45. Lever ABP (1984) Inorganic electronic spectroscopy, 2nd edn. Elsevier, Amsterdam
46. Chivers PT, Sauer RT (2000) J Biol Chem 275:19735-19741
47. Cristóbal S, de Gier JW, Nielsen H, von Heijne G (1999) EMBO J 18:2982-2990
48. Zoldák G, Schmid FX (2011) J Mol Biol 406:176-194
49. Ludlam AV, Moore BA, Xu ZH (2004) Proc Natl Acad Sci USA 101:13436-13441
50. Saul FA, Arié JP, Vulliez-le Normand B, Kahn R, Betton JM, Bentley GA (2004) J Mol Biol 335:595-608
51. Bitto E, McKay DB (2002) Structure 10:1489-1498
52. Zhang JW, Leach MR, Zamble DB (2007) J Bacteriol 189:7942-7944
53. Leach MR, Zhang JW, Zamble DB (2007) J Biol Chem 282:16177-16186
54. Dubini A, Sargent F (2003) FEBS Lett 549:141-146
55. Chung KCC, Zamble DB (2011) FEBS Lett 585:291-294
56. Edgar RC (2004) Nucleic Acids Res 32:1792-1797