메뉴 건너뛰기




Volumn 13, Issue 1, 2012, Pages

BioWord: A sequence manipulation suite for Microsoft Word

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL SEQUENCES; EDUCATIONAL PLATFORMS; FREQUENT SWITCHING; MANIPULATION TOOLS; MICROSOFT WORD; MOTIF DISCOVERY; OBJECT ORIENTED; OPEN SOURCES; PROCESSING SOFTWARE; PROGRAMMING EXPERIENCE; PROTEIN SEQUENCES; SCRIPTING LANGUAGES; SELF-INSTALLING; VISUAL BASIC FOR APPLICATIONS; WEB SERVERS; WIDE SWATH;

EID: 84861902481     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-13-124     Document Type: Article
Times cited : (8)

References (32)
  • 3
    • 0141617541 scopus 로고    scopus 로고
    • The design of Jemboss: a graphical user interface to EMBOSS
    • Carver T, Bleasby A. The design of Jemboss: a graphical user interface to EMBOSS. Bioinformatics (Oxford, England) 2003, 19(14):1837-1843.
    • (2003) Bioinformatics (Oxford, England) , vol.19 , Issue.14 , pp. 1837-1843
    • Carver, T.1    Bleasby, A.2
  • 4
    • 0032127358 scopus 로고    scopus 로고
    • The Biology Workbench-a seamless database and analysis environment for the biologist
    • Subramaniam S. The Biology Workbench-a seamless database and analysis environment for the biologist. Proteins 1998, 32(1):1-2.
    • (1998) Proteins , vol.32 , Issue.1 , pp. 1-2
    • Subramaniam, S.1
  • 5
    • 0034955513 scopus 로고    scopus 로고
    • SeWeR: a customizable and integrated dynamic HTML interface to bioinformatics services
    • Basu MK. SeWeR: a customizable and integrated dynamic HTML interface to bioinformatics services. Bioinformatics (Oxford, England) 2001, 17(6):577-578.
    • (2001) Bioinformatics (Oxford, England) , vol.17 , Issue.6 , pp. 577-578
    • Basu, M.K.1
  • 6
    • 38349107287 scopus 로고    scopus 로고
    • The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications
    • Bare JC, Shannon PT, Schmid AK, Baliga NS. The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications. BMC Bioinforma 2007, 8:456.
    • (2007) BMC Bioinforma , vol.8 , pp. 456
    • Bare, J.C.1    Shannon, P.T.2    Schmid, A.K.3    Baliga, N.S.4
  • 7
    • 33645016458 scopus 로고    scopus 로고
    • Biotool2Web: creating simple Web interfaces for bioinformatics applications
    • Shahid M, Alam I, Fuellen G. Biotool2Web: creating simple Web interfaces for bioinformatics applications. Appl Bioinforma 2006, 5(1):63-66.
    • (2006) Appl Bioinforma , vol.5 , Issue.1 , pp. 63-66
    • Shahid, M.1    Alam, I.2    Fuellen, G.3
  • 8
    • 0033990063 scopus 로고    scopus 로고
    • GCG: The Wisconsin Package of sequence analysis programs
    • Womble DD. GCG: The Wisconsin Package of sequence analysis programs. Methods Mol Biol (Clifton, NJ) 2000, 132:3-22.
    • (2000) Methods Mol Biol (Clifton, NJ) , vol.132 , pp. 3-22
    • Womble, D.D.1
  • 9
    • 0033990096 scopus 로고    scopus 로고
    • DNASTAR's Lasergene sequence analysis software
    • Burland TG. DNASTAR's Lasergene sequence analysis software. Methods Mol Biol (Clifton, NJ) 2000, 132:71-91.
    • (2000) Methods Mol Biol (Clifton, NJ) , vol.132 , pp. 71-91
    • Burland, T.G.1
  • 10
    • 0034199476 scopus 로고    scopus 로고
    • The sequence manipulation suite: JavaScript programs for analyzing and formatting protein and DNA sequences
    • Stothard P. The sequence manipulation suite: JavaScript programs for analyzing and formatting protein and DNA sequences. Biotechniques 2000, 28(6):1102-1104.
    • (2000) Biotechniques , vol.28 , Issue.6 , pp. 1102-1104
    • Stothard, P.1
  • 11
    • 84872489690 scopus 로고    scopus 로고
    • Molecular Toolkit
    • Molecular Toolkit http://www.vivo.colostate.edu/molkit/, Molecular Toolkit.
  • 12
    • 84863401100 scopus 로고    scopus 로고
    • Information technology -- Document description and processing languages -- Office Open XML File Formats
    • International Organization for Standardization, 1, ISO/IEC
    • ISO/IEC Information technology -- Document description and processing languages -- Office Open XML File Formats. 2008, International Organization for Standardization, 1, ISO/IEC.
    • (2008)
  • 13
    • 84872497391 scopus 로고    scopus 로고
    • OpenXMLDeveloper
    • OpenXMLDeveloper http://openxmldeveloper.org/blog/b/openxmldeveloper/archive/2009/08/07/7293.aspx, OpenXMLDeveloper.
  • 14
    • 0021919480 scopus 로고
    • Rapid and sensitive protein similarity searches
    • Lipman DJ, Pearson WR. Rapid and sensitive protein similarity searches. Science (New York, NY) 1985, 227(4693):1435-1441.
    • (1985) Science (New York, NY) , vol.227 , Issue.4693 , pp. 1435-1441
    • Lipman, D.J.1    Pearson, W.R.2
  • 15
    • 0027745770 scopus 로고
    • Feature expressions: creating and manipulating sequence datasets
    • Fristensky B. Feature expressions: creating and manipulating sequence datasets. Nucleic Acids Res 1993, 21(25):5997-6003.
    • (1993) Nucleic Acids Res , vol.21 , Issue.25 , pp. 5997-6003
    • Fristensky, B.1
  • 16
    • 0030825584 scopus 로고    scopus 로고
    • Codon usage tabulated from the international DNA sequence databases
    • Nakamura Y, Gojobori T, Ikemura T. Codon usage tabulated from the international DNA sequence databases. Nucleic Acids Res 1997, 25(1):244-245.
    • (1997) Nucleic Acids Res , vol.25 , Issue.1 , pp. 244-245
    • Nakamura, Y.1    Gojobori, T.2    Ikemura, T.3
  • 17
    • 0022422660 scopus 로고
    • Nomenclature for incompletely specified bases in nucleic acid sequences: recommendations 1984
    • Cornish-Bowden A. Nomenclature for incompletely specified bases in nucleic acid sequences: recommendations 1984. Nucleic Acids Res 1985, 13(9):3021-3030.
    • (1985) Nucleic Acids Res , vol.13 , Issue.9 , pp. 3021-3030
    • Cornish-Bowden, A.1
  • 18
    • 0020475449 scopus 로고
    • A simple method for displaying the hydropathic character of a protein
    • Kyte J, Doolittle RF. A simple method for displaying the hydropathic character of a protein. J Mol Biol 1982, 157(1):105-132.
    • (1982) J Mol Biol , vol.157 , Issue.1 , pp. 105-132
    • Kyte, J.1    Doolittle, R.F.2
  • 19
    • 0031583033 scopus 로고    scopus 로고
    • Information Content of Individual Genetic Sequences
    • Schneider TD. Information Content of Individual Genetic Sequences. J Theor Biol 1997, 189(4):427-441.
    • (1997) J Theor Biol , vol.189 , Issue.4 , pp. 427-441
    • Schneider, T.D.1
  • 20
    • 0032032780 scopus 로고    scopus 로고
    • Specificity, free energy and information content in protein-DNA interactions
    • Stormo GD, Fields DS. Specificity, free energy and information content in protein-DNA interactions. Trends Biochem Sci 1998, 23(3):109-113.
    • (1998) Trends Biochem Sci , vol.23 , Issue.3 , pp. 109-113
    • Stormo, G.D.1    Fields, D.S.2
  • 21
    • 65549147368 scopus 로고    scopus 로고
    • A reexamination of information theory-based methods for DNA-binding site identification
    • Erill I, O'Neill MC. A reexamination of information theory-based methods for DNA-binding site identification. BMC Bioinforma 2009, 10(1):57.
    • (2009) BMC Bioinforma , vol.10 , Issue.1 , pp. 57
    • Erill, I.1    O'Neill, M.C.2
  • 22
    • 0344464768 scopus 로고    scopus 로고
    • In silico analysis reveals substantial variability in the gene contents of the gamma proteobacteria LexA-regulon
    • Erill I, Escribano M, Campoy S, Barbe J. In silico analysis reveals substantial variability in the gene contents of the gamma proteobacteria LexA-regulon. Bioinformatics (Oxford, England) 2003, 19(17):2225-2236.
    • (2003) Bioinformatics (Oxford, England) , vol.19 , Issue.17 , pp. 2225-2236
    • Erill, I.1    Escribano, M.2    Campoy, S.3    Barbe, J.4
  • 23
    • 0344906914 scopus 로고    scopus 로고
    • Consensus sequence Zen
    • Schneider TD. Consensus sequence Zen. Appl Bioinforma 2002, 1(3):111-119.
    • (2002) Appl Bioinforma , vol.1 , Issue.3 , pp. 111-119
    • Schneider, T.D.1
  • 24
    • 0025008168 scopus 로고
    • Sequence logos: a new way to display consensus sequences
    • Schneider TD, Stephens RM. Sequence logos: a new way to display consensus sequences. Nucleic Acids Res 1990, 18(20):6097-6100.
    • (1990) Nucleic Acids Res , vol.18 , Issue.20 , pp. 6097-6100
    • Schneider, T.D.1    Stephens, R.M.2
  • 25
    • 13544260858 scopus 로고    scopus 로고
    • Differences in LexA regulon structure among Proteobacteria through in vivo assisted comparative genomics
    • Erill I, Jara M, Salvador N, Escribano M, Campoy S, Barbe J. Differences in LexA regulon structure among Proteobacteria through in vivo assisted comparative genomics. Nucleic Acids Res 2004, 32(22):6617-6626.
    • (2004) Nucleic Acids Res , vol.32 , Issue.22 , pp. 6617-6626
    • Erill, I.1    Jara, M.2    Salvador, N.3    Escribano, M.4    Campoy, S.5    Barbe, J.6
  • 26
    • 0025372992 scopus 로고
    • Identification of consensus patterns in unaligned DNA sequences known to be functionally related
    • Hertz GZ, Hartzell GW, Stormo GD. Identification of consensus patterns in unaligned DNA sequences known to be functionally related. Comput Appl Biosci 1990, 6(2):81-92.
    • (1990) Comput Appl Biosci , vol.6 , Issue.2 , pp. 81-92
    • Hertz, G.Z.1    Hartzell, G.W.2    Stormo, G.D.3
  • 28
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith TF, Waterman MS. Identification of common molecular subsequences. J Mol Biol 1981, 147(1):195-197.
    • (1981) J Mol Biol , vol.147 , Issue.1 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 29
    • 0014757386 scopus 로고
    • A general method applicable to the search for similarities in the amino acid sequence of two proteins
    • Needleman SB, Wunsch CD. A general method applicable to the search for similarities in the amino acid sequence of two proteins. J Mol Biol 1970, 48(3):443-453.
    • (1970) J Mol Biol , vol.48 , Issue.3 , pp. 443-453
    • Needleman, S.B.1    Wunsch, C.D.2
  • 30
    • 0028685490 scopus 로고
    • Fitting a mixture model by expectation maximization to discover motifs in biopolymers
    • Bailey TL, Elkan C. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc Int Conf Intell Syst Mol Biol; ISMB 1994, 2:28-36.
    • (1994) Proc Int Conf Intell Syst Mol Biol; ISMB , vol.2 , pp. 28-36
    • Bailey, T.L.1    Elkan, C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.