Prediction of breeding values for average fruit weight in mango using a multivariate individual mixed model

Euphytica

Volumn 186, Issue 2, 2012, Pages 463-477

  Hardner, C M ^a   Bally, I S E ^b   Wright, C L ^b  

^a UNIVERSITY OF QUEENSLAND   (Australia)

^b DEPARTMENT OF EMPLOYMENT ECONOMIC DEVELOPMENT AND INNOVATION   (Australia)

Author keywords

BLUP; Genetic correlation; Genotype by environment interaction; Heritability; Linear mixed model

Indexed keywords

EID: 84861819929     PISSN: 00142336     EISSN: 15735060     Source Type: Journal    
DOI: 10.1007/s10681-012-0639-7     Document Type: Article

References (75)

1. Allard RW, Bradshaw AD (1964) Implications of genotype-environment interaction in applied plant breeding. Crop Sci 4: 503-508.
2. Alspach PA (2002) Estimation of genetic parameters of apple (Malus domestica) fruit quality from open-pollinated families. N Z J Crop Hortic Sci 30: 219-228.
3. Atlin GN, Baker RJ, McRae KB, Lu X (2000) Selection response in subdivided target regions. Crop Sci 40: 7-13.
4. Ayala-Silva T, Schnell RJ, Meerow AW, Winterstein M, Cervantes C, Brown JS (2005) Determination of color and fruit traits of half-sib families of mango (Mangifera indica L.). In: Proceedings of the 118th annual meeting of the Florida State Horticultural Society. Florida State Horticultural Soc, Winter Haven.
5. Bally ISE (2008) Mango breeding activities in Australia. In: 4th international symposium on tropical and subtropical fruits. ISHS, Bogor.
6. Bally ISE, Lu P, Johnson P (2009a) Mango breeding. In: Jain SM, Priyadarshan PM (eds) Breeding plantation tree crops: tropical species. Springer, New York.
7. Bally ISE, Lu P, Johnson P, Muller WJ, Gonzalez A (2009b) Past, current and future approaches to mango genetic improvement in Australia. Acta Hortic 820: 163-164.
8. Basford KE, Cooper M (1998) Genotype × environment interactions and some considerations of their implications for wheat breeding in Australia. Aust J Agric Res 49: 153-174.
9. Blaikie SJ, O'Farrell PJ, Muller WJ, Wei X, Scott NS, Sykes SR, Chacko EK (2002) Assessment and selection of new hybrids from the Australian cashew breeding program. Aust J Exp Agric 42: 615-623.
10. Brettell RIS, Johnson PR, Kulkarni VJ, Muller W, Bally ISE (2004) Inheritance of fruit characters in hybrid mangoes produced through cross pollination. Acta Hortic 645: 319-326.
11. Burdon RD (1977) Genetic correlation as a concept for studying genotype-environment interaction in forest tree breeding. Silvae Genet 26: 168-175.
12. Butler DG, Cullis BR, Gilmour AR, Gogel BJ (2009) ASReml-R reference manual. The State of Queensland, Department of Primary Industries and Fisheries, Brisbane.
13. Cheng CH, Seal AG, Boldingh HL, Marsh KB, MacRae EA, Murphy SJ, Ferguson AR (2004) Inheritance of taste characters and fruit size and number in a diploid Actinidia chinensis (kiwifruit) population. Euphytica 138: 185-195.
14. Cooper M, Brennan PS, Sheppard JA (1996) A strategy for yield improvement of wheat which accommodates large genotype by environment interactions. In: Cooper M, Hammer GL (eds) Plant adaptation and crop improvement. CABI Publishing, Wallingford.
15. Costa e Silva J, Dutkowski GW, Borralho MG (2005) Across-site heterogeneity of genetic and environmental variances in the genetic evaluation of Eucalyptus globulus trials for height growth. Ann For Sci 62: 183.
16. Costa e Silva J, Dutkowski GW, Borralho NMG (2006) Across-site heterogeneity of genetic and environmental variances in the genetic evaluation of Eucalyptus globulus trials for height growth (vol 62, pg 183, 2005). Ann For Sci 63: 969.
17. Costa e Silva J, Borralho NMG, Araujo JA, Vaillancourt RE, Potts BM (2009) Genetic parameters for growth, wood density and pulp yield in Eucalyptus globulus. Tree Genet Genomes 5: 291-305.
18. Costa e Silva J, Hardner CM, Tilyard P, Pires A, Potts B (2010) Effects of inbreeding on population mean performance and observational variances in Eucalyptus globulus. Ann For Sci 67. doi: 10. 1051/forest/2010018.
19. Curnow RN (1988) The use of correlated information on treatment effects when selecting the best treatment. Biometrika 75: 287-293.
20. Currie AJ, Ganeshanandam S, Noiton DA, Garrick D, Shelbourne CJA, Oraguzie N (2000) Quantitative evaluation of apple (Malus × domestica Borkh.) fruit shape by principal component analysis of Fourier descriptors. Euphytica 111: 219-227.
21. de Souza VAB, Byrne DH, Taylor JF (1998a) Heritability, genetic and phenotypic correlations, and predicted selection response of quantitative traits in peach: I. An analysis of several reproductive traits. J Am Soc Hortic Sci 123: 598-603.
22. de Souza VAB, Byrne DH, Taylor JF (1998b) Heritability, genetic and phenotypic correlations, and predicted selection response of quantitative traits in peach: II. An analysis of several fruit traits. J Am Soc Hortic Sci 123: 604-611.
23. de Souza VAB, Byrne DH, Taylor JF (2000) Predicted breeding values for nine plant and fruit characteristics of 28 peach genotypes. J Am Soc Hortic Sci 125: 460-465.
24. Dickerson GE (1962) Implications of genetic-environmental interaction in animal breeding. Anim Prod 4: 47-63.
25. Dinesh MR (2003) Genetic studies in mango (Mangifera indica L.). J Appl Hortic (Lucknow) 5: 27-28.
26. Durel CE, Laurens F, Fouillet A, Lespinasse Y (1998) Utilization of pedigree information to estimate genetic parameters from large unbalanced data sets in apple. Theor Appl Genet 96: 1077-1085.
27. Dutkowski GW, Silva JCE, Gilmour AR, Wellendorf H, Aguiar A (2006) Spatial analysis enhances modelling of a wide variety of traits in forest genetic trials. Can J For Res 36: 1851-1870.
28. Ebadi A, Moghadam JE, Fatahi R (2009) Evaluation of 22 populations achieved from controlled crossing between some seeded x seedless grapevine cultivars. Sci Hortic 119: 371-376.
29. Falconer DS (1952) The problem of environment and selection. Am Nat 86: 293-298.
30. Falconer DS, Mackay TFC (1996) An introduction to quantitative genetics, 4th edn. Longman, Essex.
31. Galan Sauco V (2010) Worldwide mango production and market. Current situation and market. In: 9th international mango symposium ISHS, Sanya.
32. Gianola D, Foulley JL, Fernando RL (1986) Prediction of breeding values when variances are not known. Genet Sel Evol 18: 485-497.
33. Gilmour AR, Cullis BR, Verbyla AP (1997) Accounting for natural and extraneous variation in the analysis of field experiments. J Agric Biol Environ Stat 2: 269-273.
34. Hansche PE (1986) Heritability of fruit-quality traits in peach and nectarine breeding stocks dwarfed by the dw gene. HortScience 21: 1193-1195.
35. Hansche PE, Beres V, Forde HI (1972a) Estimates of quantitative genetic properties of walnut and their implications for cultivar improvement. J Am Soc Hortic Sci 97: 279-285.
36. Hansche PE, Beres V, Hesse CO (1972b) Estimates of genetic and environmental effects on several traits in peach. J Am Soc Hortic Sci 97: 76-79.
37. Hardner CM, Dieters M, Dale G, DeLacy I, Basford KE (2010) Patterns of genotype-by-environment interaction in diameter at breast height at age 3 for eucalypt hybrid clones grown for reafforestation of lands affected by salinity. Tree Genet Genomes 6: 833-851.
38. Henderson CR (1975) Best linear unbiased estimation and prediction under a selection model. Biometrics 31: 423-447.
39. Itoh Y, Yamada Y (1990) Relationships between genotype × environment interaction genetic correlation of the same trait measured in different environments. Theor Appl Genet 80: 11-16.
40. Iyer CPA, Schnell RJ (2009) Breeding and genetics. In: Litz RE (ed) The mango botany, production and uses. CABI International, Wallingford.
41. Kennedy BW (1981) Variance component estimation and prediction of breeding values. Can J Genet Cytol 23: 565-578.
42. Kouassi AB, Durel CE, Costa F, Tartarini S, van de Weg E, Evans K, Fernandez-Fernandez F, Govan C, Boudichevskaja A, Dunemann F, Antofie A, Lateur M, Stankiewicz-Kosyl M, Soska A, Tomala K, Lewandowski M, Rutkovski K, Zurawicz E, Guerra W, Laurens F (2009) Estimation of genetic parameters and prediction of breeding values for apple fruit-quality traits using pedigreed plant material in Europe. Tree Genet Genomes 5: 659-672.
43. Kulkarni VJ, Bally ISE, Brettell RIS, Johnson PR, Hamilton D (2002) The Australian national mango breeding program-in search of improved cultivars for the new millennium. In: Drew R (ed) Proceedings of the international symposium on tropical and subtropical fruits, vols 1, 2. International Society Horticultural Science, Leuven, p 1.
44. Lavi U, Tomer E, Gazit S (1989) Inheritance of agriculturally important traits in mango. Euphytica 44: 5-10.
45. Lavi U, Tomer E, Gazit S, Hillel J (1998) Components of the genetic variance and genetic correlations between traits in Mango. Sci Hortic 75: 11-25.
46. Lynch M, Walsh B (1998) Genetics and analysis of quantitative traits. Sinauer, Sunderland.
47. Marsh HD, Paterson T, Seal AG, McNeilage MA (2003) Heritability estimates in kiwifruit. Acta Hortic 622: 221-229.
48. Matheson AC, Cotterill PP (1990) Utility of genotype × environment interactions. For Ecol Manage 30: 159-174.
49. Meyer K (2009) Factor-analytic models for genotype × environment type problems and structured covariance matrices. Genet Sel Evol 41: 11.
50. Mrode RA (2005) Linear models for the prediction of animal breeding values. CABI Publishing, Wallingford.
51. Oraguzie NC, Hofstee ME, Brewer LR, Howard C (2001) Estimation of genetic parameters in a recurrent selection program in Apple. Euphytica 118: 29-37.
52. Piepho HP (1997) Analyzing genotype-environment data by mixed models with multiplicative terms. Biometrics 53: 761-766.
53. Piepho HP (1998) Empirical best linear unbiased prediction in cultivar trials using factor-analytic variance-covariance structures. Theor Appl Genet 97: 195-201.
54. Piepho HP, Mohring J (2005) Best linear unbiased prediction of cultivar effects for subdivided target regions. Crop Sci 45: 1151-1159.
55. Prasad A (1987) Correlation studies on growth behaviour and fruit characters. Indian J Hortic 44: 176-183.
56. Raymond CA, Cotterill PP (1990) Methods for assessing crown form in Pinus radiata. Silvae Genet 39: 67-71.
57. Robert C, Foulley JL, Ducrocq V (1995) Genetic-variation of traits measured in several environments. 1. Estimation and testing of homogeneous genetic and intra-class correlations between environments. Genet Sel Evol 27: 111-123.
58. Robertson A (1959) The sampling covariance of the genetic correlation coefficient. Biometrics 15: 469-485.
59. Shin IS, Shin YU, Hwang HS (2008) Heritability of fruit characters of interspecific hybrids between Pyrus pyrifolia and P. ussuriensis or P. breschneideri. Acta Hortic 800: 535-540.
60. Singh DB (2002) Improvement of mango (Mangifera indica) for regular and early fruiting in Andaman. Indian J Agric 72: 631-634.
61. Singh J, Singh RR, Dubey PS, Singh UK (2004a) Studies on the genetic variability and character association for yield and quality traits in mango chance seedlings. J Appl Biol 14: 37-39.
62. Singh RR, Singh J, Yadav GS, Singh UK (2004b) Studies on the genetic variability and performance of some mango cultivars for yield and quality traits. J Appl Biol 14: 31-33.
63. Smith A, Cullis B, Thompson R (2001) Analyzing variety by environment data using multiplicative mixed models and adjustments for spatial field trend. Biometrics 57: 1138-1147.
64. Smith AB, Cullis BR, Thompson R (2005) The analysis of crop cultivar breeding and evaluation trials: an overview of current mixed model approaches. J Agric Sci 143: 449-462.
65. Smith AB, Stringer JK, Wei X, Cullis BR (2007) Varietal selection for perennial crops where data relate to multiple harvests from a series of field trials. Euphytica 157: 253-266.
66. Smith MW, Bright JD, Hoult MD, Renfree RA, Maddern T, Coombes N (2008) Field evaluation of 64 rootstocks for growth and yield of 'Kensington pride' mango. HortScience 43: 1720-1725.
67. Stern H, de Hoedt G, Ernst J (2000) Objective classification of Australian climates. Aust Meteorol Mag 49: 87-96.
68. Stinchcombe JR, Izem R, Heschel MS, McGoey BV, Schmitt J (2010) Across-environment genetic correlations and the frequency of selective environments shape the evolutionary dynamics of growth rate in Impatiens capensis. Evolution 64: 2887-2903.
69. Stram DO, Lee JW (1994) Variance-components testing in the longitudinal mixed effects model. Biometrics 50: 1171-1177.
70. van Eeuwijk FA, Cooper M, DeLacy IH, Ceccarelli S, Grando S (2001) Some vocabulary and grammar for the analysis of multi-environment trials, as applied to the analysis of FPB and PPB trials. Euphytica 122: 477-490.
71. van Eeuwijk FA, Bink M, Chenu K, Chapman SC (2010) Detection and use of QTL for complex traits in multiple environments. Curr Opin Plant Biol 13: 193-205.
72. Wei XM, Sykes SR, Clingeleffer PR (2002) An investigation to estimate genetic parameters in CSIRO's table grape breeding program. 2. Quality characteristics. Euphytica 128: 343-351.
73. Yamada Y (1962) Genotype by environment interaction and genetic correlation of the same trait under different environments. Jpn J Genet 37: 498-509.
74. Zeinanloo A, Shahsavari A, Mohammadi A, Naghavi MR (2009) Variance component and heritability of some fruit characters in olive (Olea europaea L.). Sci Hortic 123: 68-72.
75. Zhu DY, Lawes GS, Gordon IL (2002) Estimates of genetic variability and heritability for vegetative and reproductive characters of kiwifruit (Actinidia deliciosa). Euphytica 124: 93-98.