-
1
-
-
38849112675
-
Genomic regulatory blocks underlie extensive microsynteny conservation in insects
-
DOI 10.1101/gr.6669607
-
Engstrom, P. G., Ho Sui, S. J., Drivenes, O., Becker, T. S. & Lenhard, B. Genomic regulatory blocks underlie extensive microsynteny conservation in insects. Genome Res. 17, 1898-1908, doi:10.1101/gr.6669607 (2007). (Pubitemid 351360012)
-
(2007)
Genome Research
, vol.17
, Issue.12
, pp. 1898-1908
-
-
Engstrom, P.G.1
Sui, S.J.H.2
Drivenes, O.3
Becker, T.S.4
Lenhard, B.5
-
2
-
-
34248153777
-
Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates
-
DOI 10.1101/gr.6086307
-
Kikuta, H. et al. Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates. Genome Res. 17, 545-555 (2007). (Pubitemid 46715504)
-
(2007)
Genome Research
, vol.17
, Issue.5
, pp. 545-555
-
-
Kikuta, H.1
Laplante, M.2
Navratilova, P.3
Komisarczuk, A.Z.4
Engstrom, P.G.5
Fredman, D.6
Akalin, A.7
Caccamo, M.8
Sealy, I.9
Howe, K.10
Ghislain, J.11
Pezeron, G.12
Mourrain, P.13
Ellingsen, S.14
Oates, A.C.15
Thisse, C.16
Thisse, B.17
Foucher, I.18
Adolf, B.19
Geling, A.20
Lenhard, B.21
Becker, T.S.22
more..
-
3
-
-
84859541999
-
An ancient genomic regulatory block conserved across bilaterians and its dismantling in tetrapods by retrogene replacement
-
Maeso, I. et al. An ancient genomic regulatory block conserved across bilaterians and its dismantling in tetrapods by retrogene replacement. Genome Res 22, 642-655 (2012).
-
(2012)
Genome Res
, vol.22
, pp. 642-655
-
-
Maeso, I.1
-
4
-
-
68549123708
-
A cluster of three long-range enhancers directs regional Shh expression in the epithelial linings
-
Sagai, T. et al. A cluster of three long-range enhancers directs regional Shh expression in the epithelial linings. Development 136, 1665-1674 (2009).
-
(2009)
Development
, vol.136
, pp. 1665-1674
-
-
Sagai, T.1
-
5
-
-
0037188510
-
Disruption of a long-range cis-acting regulator for Shh causes preaxial polydactyly
-
DOI 10.1073/pnas.112212199
-
Lettice, L. A. et al. Disruption of a long-range cis-acting regulator for Shh causes preaxial polydactyly. Proc Natl Acad Sci USA 99, 7548-7553 (2002). (Pubitemid 34568728)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.11
, pp. 7548-7553
-
-
Lettice, L.A.1
Horikoshi, T.2
Heaney, S.J.H.3
Van Baren, M.J.4
Van Der Linde, H.C.5
Breedveld, G.J.6
Joosse, M.7
Akarsu, N.8
Oostra, B.A.9
Endo, N.10
Shibata, M.11
Suzuki, M.12
Takahashi, E.13
Shinka, T.14
Nakahori, Y.15
Ayusawa, D.16
Nakabayashi, K.17
Scherer, S.W.18
Heutink, P.19
Hill, R.E.20
Noji, S.21
more..
-
6
-
-
51949085076
-
Hedgehog: Functions and mechanisms
-
Varjosalo, M. & Taipale, J. Hedgehog: functions and mechanisms. Genes Dev 22, 2454-2472 (2008).
-
(2008)
Genes Dev
, vol.22
, pp. 2454-2472
-
-
Varjosalo, M.1
Taipale, J.2
-
7
-
-
0035577854
-
Hedgehog signaling in animal development: Paradigms and principles
-
DOI 10.1101/gad.938601
-
Ingham, P. W. & McMahon, A. P. Hedgehog signaling in animal development: paradigms and principles. Genes Dev 15, 3059-3087 (2001). (Pubitemid 33115673)
-
(2001)
Genes and Development
, vol.15
, Issue.23
, pp. 3059-3087
-
-
Ingham, P.W.1
McMahon, A.P.2
-
8
-
-
20344380662
-
The mechanisms of dorsoventral patterning in the vertebrate neural tube
-
DOI 10.1016/j.ydbio.2005.02.027, PII S001216060500134X
-
Wilson, L. & Maden, M. The mechanisms of dorsoventral patterning in the vertebrate neural tube. Dev Biol 282, 1-13 (2005). (Pubitemid 40779924)
-
(2005)
Developmental Biology
, vol.282
, Issue.1
, pp. 1-13
-
-
Wilson, L.1
Maden, M.2
-
9
-
-
7044269184
-
Hedgehog signaling from the ZLI regulates diencephalic regional identity
-
DOI 10.1038/nn1338
-
Kiecker, C. & Lumsden, A. Hedgehog signaling from the ZLI regulates diencephalic regional identity. Nature Neuroscience 7, 1242-1249 (2004). (Pubitemid 39426244)
-
(2004)
Nature Neuroscience
, vol.7
, Issue.11
, pp. 1242-1249
-
-
Kiecker, C.1
Lumsden, A.2
-
10
-
-
0027760995
-
Sonic hedgehog mediates the polarizing activity of the ZPA
-
DOI 10.1016/0092-8674(93)90626-2
-
Riddle, R. D., Johnson, R. L., Laufer, E. & Tabin, C. Sonic hedgehog mediates the polarizing activity of the ZPA. Cell 75, 1401-1416 (1993). (Pubitemid 24021914)
-
(1993)
Cell
, vol.75
, Issue.7
, pp. 1401-1416
-
-
Riddle, R.D.1
Johnson, R.L.2
Laufer, E.3
Tabin, C.4
-
11
-
-
84861668608
-
Otic ablation of smoothened reveals direct and indirect requirements for Hedgehog signaling in inner ear development
-
Brown, A. S. & Epstein, D. J. Otic ablation of smoothened reveals direct and indirect requirements for Hedgehog signaling in inner ear development. Dev Cell 22, 585-596 (2012).
-
(2012)
Dev Cell
, vol.22
, pp. 585-596
-
-
Brown, A.S.1
Epstein, D.J.2
-
12
-
-
0033695047
-
Sonic hedgehog signaling pathway in vertebrate epithelial appendage morphogenesis: Perspectives in development and evolution
-
Chuong, C. M., Patel, N., Lin, J., Jung, H. S. & Widelitz, R. B. Sonic hedgehog signaling pathway in vertebrate epithelial appendage morphogenesis: perspectives in development and evolution. Cell Mol Life Sci 57, 1672-1681 (2000).
-
(2000)
Cell Mol Life Sci
, vol.57
, pp. 1672-1681
-
-
Chuong, C.M.1
Patel, N.2
Lin, J.3
Jung, H.S.4
Widelitz, R.B.5
-
13
-
-
0027756145
-
Sonic hedgehog, a member of a family of putative signaling molecules, is implicated in the regulation of CNS polarity
-
DOI 10.1016/0092-8674(93)90627-3
-
Echelard, Y. et al. Sonic hedgehog, a member of a family of putative signaling molecules, is implicated in the regulation of CNS polarity. Cell 75, 1417-1430 (1993). (Pubitemid 24021915)
-
(1993)
Cell
, vol.75
, Issue.7
, pp. 1417-1430
-
-
Echelard, Y.1
Epstein, D.J.2
St-Jacques, B.3
Shen, L.4
Mohler, J.5
McMahon, J.A.6
McMahon, A.P.7
-
14
-
-
21444434589
-
Highly conserved regulatory elements around the SHH gene may contribute to the maintenance of conserved synteny across human chromosome 7q36.3
-
DOI 10.1016/j.ygeno.2005.04.006, PII S0888754305000984
-
Goode, D. K., Snell, P., Smith, S. F., Cooke, J. E. & Elgar, G. Highly conserved regulatory elements around the SHH gene may contribute to the maintenance of conserved synteny across human chromosome 7q36.3. Genomics 86, 172-181 (2005). (Pubitemid 40917222)
-
(2005)
Genomics
, vol.86
, Issue.2
, pp. 172-181
-
-
Goode, D.K.1
Snell, P.2
Smith, S.F.3
Cooke, J.E.4
Elgar, G.5
-
15
-
-
0032915095
-
Regionalization of Sonic hedgehog transcription along the anteroposterior axis of the mouse central nervous system is regulated by Hnf3-dependent and -independent mechanisms
-
Epstein, D. J., McMahon, A. P. & Joyner, A. L. Regionalization of Sonic hedgehog transcription along the anteroposterior axis of the mouse central nervous system is regulated by Hnf3-dependent and -independent mechanisms. Development 126, 281-292 (1999). (Pubitemid 29083966)
-
(1999)
Development
, vol.126
, Issue.2
, pp. 281-292
-
-
Epstein, D.J.1
McMahon, A.P.2
Joyner, A.L.3
-
16
-
-
0029079893
-
Distribution of Sonic hedgehog peptides in the developing chick and mouse embryo
-
Martí, E., Takada, R., Bumcrot, D. A., Sasaki, H. & McMahon, A. P. Distribution of Sonic hedgehog peptides in the developing chick and mouse embryo. Development 121, 2537-2547 (1995).
-
(1995)
Development
, vol.121
, pp. 2537-2547
-
-
Martí, E.1
Takada, R.2
Bumcrot, D.A.3
Sasaki, H.4
McMahon, A.P.5
-
17
-
-
79955716538
-
Ontogenetic expression of sonic hedgehog in the chicken subpallium
-
pii
-
Bardet, S. M., Ferran, J. L., Sanchez-Arrones, L. & Puelles, L. Ontogenetic expression of sonic hedgehog in the chicken subpallium. Front Neuroanat 4. pii, 28 (2010).
-
(2010)
Front Neuroanat
, vol.4
, pp. 28
-
-
Bardet, S.M.1
Ferran, J.L.2
Sanchez-Arrones, L.3
Puelles, L.4
-
18
-
-
33645073400
-
A functional screen for sonic hedgehog regulatory elements across a 1 Mb interval identifies longrange ventral forebrain enhancers
-
Jeong, Y., El-Jaick, K., Roessler, E.,Muenke, M. & Epstein,D. J.Afunctional screen for sonic hedgehog regulatory elements across a 1 Mb interval identifies longrange ventral forebrain enhancers. Development 133, 761-772 (2006).
-
(2006)
Development
, vol.133
, pp. 761-772
-
-
Jeong, Y.1
El-Jaick, K.2
Roessler, E.3
Muenke, M.4
Epstein, D.J.5
-
19
-
-
14844341770
-
Elimination of a long-range cis-regulatory module causes complete loss of limb-specific Shh expression and truncation of the mouse limb
-
DOI 10.1242/dev.01613
-
Sagai, T., Hosoya, M.,Mizushina, Y., Tamura, M. & Shiroishi, T. Elimination of a long-range cis-regulatory module causes complete loss of limb-specific Shh expression and truncation of the mouse limb. Development 132, 797-803 (2005). (Pubitemid 40352838)
-
(2005)
Development
, vol.132
, Issue.4
, pp. 797-803
-
-
Sagai, T.1
Hosoya, M.2
Mizushina, Y.3
Tamura, M.4
Shiroishi, T.5
-
20
-
-
0346040475
-
Phylogenetic conservation of a limb-specific, cis-acting regulator of Sonic hedgehog (Shh)
-
DOI 10.1007/s00335-033-2317-5
-
Sagai, T. et al. Phylogenetic conservation of a limb-specific, cis-acting regulator of Sonic hedgehog ( Shh). Mammalian Genome V15, 23-34 (2004). (Pubitemid 38096207)
-
(2004)
Mammalian Genome
, vol.15
, Issue.1
, pp. 23-34
-
-
Sagai, T.1
Masuya, H.2
Tamura, M.3
Shimizu, K.4
Yada, Y.5
Wakana, S.6
Gondo, Y.7
Noda, T.8
Shiroishi, T.9
-
21
-
-
0042810698
-
A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly
-
DOI 10.1093/hmg/ddg180
-
Lettice, L. A. et al. A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly. Hum. Mol. Genet. 12, 1725-1735 (2003). (Pubitemid 36896664)
-
(2003)
Human Molecular Genetics
, vol.12
, Issue.14
, pp. 1725-1735
-
-
Lettice, L.A.1
Heaney, S.J.H.2
Purdie, L.A.3
Li, L.4
De Beer, P.5
Oostra, B.A.6
Goode, D.7
Elgar, G.8
Hill, R.E.9
De Graaff, E.10
-
22
-
-
33846087787
-
Cooperation of sonic hedgehog enhancers in midline expression
-
DOI 10.1016/j.ydbio.2006.11.004, PII S0012160606013479
-
Ertzer, R. et al. Cooperation of sonic hedgehog enhancers in midline expression. Developmental Biology 301, 578-589 (2007). (Pubitemid 46073986)
-
(2007)
Developmental Biology
, vol.301
, Issue.2
, pp. 578-589
-
-
Ertzer, R.1
Muller, F.2
Hadzhiev, Y.3
Rathnam, S.4
Fischer, N.5
Rastegar, S.6
Strahle, U.7
-
23
-
-
80051922707
-
Conservation of shh cis-regulatory architecture of the coelacanth is consistent with its ancestral phylogenetic position
-
Lang, M. et al. Conservation of shh cis-regulatory architecture of the coelacanth is consistent with its ancestral phylogenetic position. EvoDevo 1, 11 (2010).
-
(2010)
EvoDevo
, vol.1
, pp. 11
-
-
Lang, M.1
-
24
-
-
34249337760
-
An autopodial-like pattern of Hox expression in the fins of a basal actinopterygian fish
-
DOI 10.1038/nature05838, PII NATURE05838
-
Davis, M. C., Dahn, R. D. & Shubin, N. H. An autopodial-like pattern of Hox expression in the fins of a basal actinopterygian fish. Nature 447, 473-476 (2007). (Pubitemid 46816741)
-
(2007)
Nature
, vol.447
, Issue.7143
, pp. 473-476
-
-
Davis, M.C.1
Dahn, R.D.2
Shubin, N.H.3
-
25
-
-
45749086679
-
The amphioxus genome and the evolution of the chordate karyotype
-
DOI 10.1038/nature06967, PII NATURE06967
-
Putnam, N. et al. The amphioxus genome and the evolution of the chordate karyotype. Nature 453, 1064-1071 (2008). (Pubitemid 351888243)
-
(2008)
Nature
, vol.453
, Issue.7198
, pp. 1064-1071
-
-
Putnam, N.H.1
Butts, T.2
Ferrier, D.E.K.3
Furlong, R.F.4
Hellsten, U.5
Kawashima, T.6
Robinson-Rechavi, M.7
Shoguchi, E.8
Terry, A.9
Yu Jr., K.10
Benito-Gutierrez, E.11
Dubchak, I.12
Garcia-Fernandez, J.13
Gibson-Brown, J.J.14
Grigoriev, I.V.15
Horton, A.C.16
De Jong, P.J.17
Jurka, J.18
Kapitonov, V.V.19
Kohara, Y.20
Kuroki, Y.21
Lindquist, E.22
Lucas, S.23
Osoegawa, K.24
Pennacchio, L.A.25
Salamov, A.A.26
Satou, Y.27
Sauka-Spengler, T.28
Schmutz, J.29
Shin-I, T.30
Toyoda, A.31
Bronner-Fraser, M.32
Fujiyama, A.33
Holland, L.Z.34
Holland, P.W.H.35
Satoh, N.36
Rokhsar, D.S.37
more..
-
26
-
-
78650911222
-
Copy-number variations involving the IHHlocus are associated with syndactyly and craniosynostosis
-
Klopocki, E. et al. Copy-number variations involving the IHHlocus are associated with syndactyly and craniosynostosis. Am J Hum Genet 88, 70-75 (2011).
-
(2011)
Am J Hum Genet
, vol.88
, pp. 70-75
-
-
Klopocki, E.1
-
27
-
-
84858187883
-
Ancient deuterostome origins of vertebrate brain signalling centres
-
Pani, A. M. et al. Ancient deuterostome origins of vertebrate brain signalling centres. Nature 483, 289-294 (2012).
-
(2012)
Nature
, vol.483
, pp. 289-294
-
-
Pani, A.M.1
-
28
-
-
0019133661
-
Mutations affecting segment number and polarity in Drosophila
-
DOI 10.1038/287795a0
-
Nüsslein-Volhard, C. & Wieschaus, E. Mutations affecting segment number and polarity in Drosophila. Nature 287, 795-801 (1980). (Pubitemid 11214475)
-
(1980)
Nature
, vol.287
, Issue.5785
, pp. 795-801
-
-
Nusslein-Volhard, C.1
Wieschaus, E.2
-
29
-
-
71549119821
-
Planarian Hh signaling regulates regeneration polarity and links Hh pathway evolution to cilia
-
Rink, J. C., Gurley, K. A., Elliott, S. A. & Sánchez Alvarado, A. Planarian Hh signaling regulates regeneration polarity and links Hh pathway evolution to cilia. Science 326, 1406-1410 (2009).
-
(2009)
Science
, vol.326
, pp. 1406-1410
-
-
Rink, J.C.1
Gurley, K.A.2
Elliott, S.A.3
Sánchez Alvarado, A.4
-
30
-
-
29144447754
-
Expression of 'segmentation' genes during larval and juvenile development in the polychaetes Capitella sp. I and H. elegans
-
DOI 10.1016/j.ydbio.2005.10.025, PII S0012160605007530
-
Seaver, E. C. & Kaneshige, L. M. Expression of 'segmentation' genes during larval and juvenile development in the polychaetes Capitella sp. I and H. elegans. Dev Biol 289, 179-194 (2006). (Pubitemid 41804097)
-
(2006)
Developmental Biology
, vol.289
, Issue.1
, pp. 179-194
-
-
Seaver, E.C.1
Kaneshige, L.M.2
-
31
-
-
67349109908
-
Hedgehog signaling patterns mesoderm in the sea urchin
-
Walton, K. D., Warner, J., Hertzler, P. H. & McClay, D. R. Hedgehog signaling patterns mesoderm in the sea urchin. Dev Biol 331, 26-37 (2009).
-
(2009)
Dev Biol
, vol.331
, pp. 26-37
-
-
Walton, K.D.1
Warner, J.2
Hertzler, P.H.3
McClay, D.R.4
-
32
-
-
0032902081
-
The evolution of the hedgehog gene family in chordates: Insights from amphioxus hedgehog
-
DOI 10.1007/s004270050225
-
Shimeld, S. M. The evolution of the hedgehog gene family in chordates: insights from amphioxus hedgehog. Development Genes and Evolution 209, 40-47 (1999). (Pubitemid 29054719)
-
(1999)
Development Genes and Evolution
, vol.209
, Issue.1
, pp. 40-47
-
-
Shimeld, S.M.1
-
33
-
-
41149180853
-
An Amphioxus Gli Gene Reveals Conservation ofMidline Patterning and the Evolution of Hedgehog Signalling Diversity in Chordates
-
Shimeld, S. M., van den Heuvel, M., Dawber, R. & Briscoe, J. An Amphioxus Gli Gene Reveals Conservation ofMidline Patterning and the Evolution of Hedgehog Signalling Diversity in Chordates. PLoS ONE 2, e864 (2007).
-
(2007)
PLoS ONE
, vol.2
-
-
Shimeld, S.M.1
Van Den Heuvel, M.2
Dawber, R.3
Briscoe, J.4
-
34
-
-
79955092263
-
Conserved developmental expression of Fezf in chordates and Drosophila and the origin of the Zona Limitans Intrathalamica (ZLI) brain organizer
-
Irimia, M. et al. Conserved developmental expression of Fezf in chordates and Drosophila and the origin of the Zona Limitans Intrathalamica (ZLI) brain organizer. EvoDevo 1, 7 (2010).
-
(2010)
EvoDevo
, vol.1
, pp. 7
-
-
Irimia, M.1
-
35
-
-
28244471660
-
Organisation of the lamprey (Lampetra fluviatilis) embryonic brain: Insights from LIM-homeodomain, Pax and hedgehog genes
-
DOI 10.1016/j.ydbio.2005.08.042, PII S0012160605005695
-
Osorio, J., Mazan, S. & Retaux, S. Organisation of the lamprey (Lampetra fluviatilis) embryonic brain: Insights from LIM-homeodomain, Pax and hedgehog genes. Dev Biol 288, 100-112 (2005). (Pubitemid 41713157)
-
(2005)
Developmental Biology
, vol.288
, Issue.1
, pp. 100-112
-
-
Osorio, J.1
Mazan, S.2
Retaux, S.3
-
36
-
-
35348950052
-
Phylogenetic position of a whale-fall lancelet (Cephalochordata) inferred from whole mitochondrial genome sequences
-
Kon, T. et al. Phylogenetic position of a whale-fall lancelet (Cephalochordata) inferred from whole mitochondrial genome sequences. BMC Evol Biol 7, 127 (2007).
-
(2007)
BMC Evol Biol
, vol.7
, pp. 127
-
-
Kon, T.1
-
37
-
-
10944225682
-
Evolution of the mitochondrial genome in cephalochordata as inferred from complete nucleotide sequences from two Epigonichthys species
-
DOI 10.1007/s00239-004-0238-x
-
Nohara, M., Nishida, M., Miya, M. & Nishikawa, T. Evolution of the mitochondrial genome in cephalochordata as inferred from complete nucleotide sequences from two epigonichthys species. J Mol Evol 60, 526-537 (2005). (Pubitemid 40754793)
-
(2005)
Journal of Molecular Evolution
, vol.60
, Issue.4
, pp. 526-537
-
-
Nohara, M.1
Nishida, M.2
Miya, M.3
Nishikawa, T.4
-
38
-
-
22544484800
-
New complete mitochondrial DNA sequence of the lancelet Branchiostoma lanceolatum (Cephalochordata) and the identity of this species' sequences
-
DOI 10.2108/zsj.22.671
-
Nohara, M., Nishida, M. & Nishikawa, T. New complete mitochondrial DNA sequence of the lancelet Branchiostoma lanceolatum (Cephalochordata) and the identity of this species' sequences. Zoolog. Sci. 22, 671-674 (2005). (Pubitemid 41019750)
-
(2005)
Zoological Science
, vol.22
, Issue.6
, pp. 671-674
-
-
Nohara, M.1
Nishida, M.2
Nishikawa, T.3
-
39
-
-
0041508221
-
Distinct regulators of Shh transcription in the floor plate and notochord indicate separate origins for these tissues in the mouse node
-
DOI 10.1242/dev.00590
-
Jeong, Y. & Epstein, D. J. Distinct regulators of Shh transcription in the floor plate and notochord indicate separate origins for these tissues in the mouse node. Development 130, 3891-3902 (2003). (Pubitemid 37039092)
-
(2003)
Development
, vol.130
, Issue.16
, pp. 3891-3902
-
-
Jeong, Y.1
Epstein, D.J.2
-
40
-
-
77954928435
-
Midline signaling and evolution of the forebrain in chordates: A focus on the lamprey Hedgehog case
-
Rétaux, S. & Kano, S. Midline signaling and evolution of the forebrain in chordates: a focus on the lamprey Hedgehog case. Integr Comp Biol 50, 98-109 (2010).
-
(2010)
Integr Comp Biol
, vol.50
, pp. 98-109
-
-
Rétaux, S.1
Kano, S.2
-
41
-
-
46449117597
-
The amphioxus genome illuminates vertebrate origins and cephalochordate biology
-
DOI 10.1101/gr.073676.107
-
Holland, L. Z. et al. The amphioxus genome illuminates vertebrate origins and cephalochordate biology. Genome Res 18, 1100-1111 (2008). (Pubitemid 351931161)
-
(2008)
Genome Research
, vol.18
, Issue.7
, pp. 1100-1111
-
-
Holland, L.Z.1
Albalat, R.2
Azumi, K.3
Benito-Gutierrez, E.4
Blow, M.J.5
Bronner-Fraser, M.6
Brunet, F.7
Butts, T.8
Candiani, S.9
Dishaw, L.J.10
Ferrier, D.E.K.11
Garcia-Fernandez, J.12
Gibson-Brown, J.J.13
Gissi, C.14
Godzik, A.15
Hallbook, F.16
Hirose, D.17
Hosomichi, K.18
Ikuta, T.19
Inoko, H.20
Kasahara, M.21
Kasamatsu, J.22
Kawashima, T.23
Kimura, A.24
Kobayashi, M.25
Kozmik, Z.26
Kubokawa, K.27
Laudet, V.28
Litman, G.W.29
McHardy, A.C.30
Meulemans, D.31
Nonaka, M.32
Olinski, R.P.33
Pancer, Z.34
Pennacchio, L.A.35
Pestarino, M.36
Rast, J.P.37
Rigoutsos, I.38
Robinson-Rechavi, M.39
Roch, G.40
Saiga, H.41
Sasakura, Y.42
Satake, M.43
Satou, Y.44
Schubert, M.45
Sherwood, N.46
Shiina, T.47
Takatori, N.48
Tello, J.49
Vopalensky, P.50
Wada, S.51
Xu, A.52
Ye, Y.53
Yoshida, K.54
Yoshizaki, F.55
Yu, J.-K.56
Zhang, Q.57
Zmasek, C.M.58
De Jong, P.J.59
Osoegawa, K.60
Putnam, N.H.61
Rokhsar, D.S.62
Satoh, N.63
Holland, P.W.H.64
more..
-
42
-
-
80052152362
-
Transphyletic conservation of developmental regulatory state in animal evolution
-
Royo, J. L. et al. Transphyletic conservation of developmental regulatory state in animal evolution. Proc Natl Acad Sci USA 108, 14186-14191 (2011).
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 14186-14191
-
-
Royo, J.L.1
-
43
-
-
0029969711
-
Expression of axial and sonic hedgehog in wildtype and midline defective zebrafish embryos
-
Strähle, U., Blader, P. & Ingham, P.W. Expression of axial and sonic hedgehog in wildtype and midline defective zebrafish embryos. Int J Dev Biol 40, 429-440 (1996).
-
(1996)
Int J Dev Biol
, vol.40
, pp. 429-440
-
-
Strähle, U.1
Blader, P.2
Ingham, P.W.3
-
44
-
-
33846306331
-
Sonic hedgehog function in chondrichthyan fins and the evolution of appendage patterning
-
DOI 10.1038/nature05436, PII NATURE05436
-
Dahn, R. D., Davis, M. C., Pappano, W. N. & Shubin, N. H. Sonic hedgehog function in chondrichthyan fins and the evolution of appendage patterning. Nature 445, 311-314 (2007). (Pubitemid 46122817)
-
(2007)
Nature
, vol.445
, Issue.7125
, pp. 311-314
-
-
Dahn, R.D.1
Davis, M.C.2
Pappano, W.N.3
Shubin, N.H.4
-
45
-
-
78149433456
-
Two lamprey Hedgehog genes share non-coding regulatory sequences and expression patterns with gnathostome Hedgehogs
-
Kano, S. et al. Two lamprey Hedgehog genes share non-coding regulatory sequences and expression patterns with gnathostome Hedgehogs. PLoS One 5, e13332 (2010).
-
(2010)
PLoS One
, vol.5
-
-
Kano, S.1
-
46
-
-
57649237971
-
Unexpectedly large number of conserved noncoding regions within the ancestral chordate Hox cluster
-
Pascual-Anaya, J., D'Aniello, S. & Garcia-Fernàndez, J. Unexpectedly large number of conserved noncoding regions within the ancestral chordate Hox cluster. Dev Genes Evol 218, 591-597 (2008).
-
(2008)
Dev Genes Evol
, vol.218
, pp. 591-597
-
-
Pascual-Anaya, J.1
D'Aniello, S.2
Garcia-Fernàndez, J.3
-
47
-
-
0037379619
-
The ascidian tadpole larva: Comparative molecular development and genomics
-
DOI 10.1038/nrg1042
-
Satoh, N. The ascidian tadpole larva: comparative molecular development and genomics. Nat Rev Genet 4, 285-295 (2003). (Pubitemid 36389533)
-
(2003)
Nature Reviews Genetics
, vol.4
, Issue.4
, pp. 285-295
-
-
Satoh, N.1
-
48
-
-
77951207271
-
Cis-regulatory characterization of sequence conservation surrounding the Hox4 genes
-
Punnamoottil, B. et al. Cis-regulatory characterization of sequence conservation surrounding the Hox4 genes. Dev Biol 340, 269-282 (2010).
-
(2010)
Dev Biol
, vol.340
, pp. 269-282
-
-
Punnamoottil, B.1
-
49
-
-
0034649652
-
Conservation and elaboration of Hox gone regulation during evolution of the vertebrate head
-
DOI 10.1038/35048570
-
Manzanares, M. et al. Conservation and elaboration of Hox gene regulation during evolution of the vertebrate head. Nature 408, 854-857 (2000). (Pubitemid 32016094)
-
(2000)
Nature
, vol.408
, Issue.6814
, pp. 854-857
-
-
Manzanares, M.1
Wada, H.2
Itasaki, N.3
Trainor, P.A.4
Krumlauf, R.5
Holland, P.W.H.6
-
50
-
-
70350741353
-
Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention
-
Hufton, A. L. et al. Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention. Genome Res 19, 2036-2051 (2009).
-
(2009)
Genome Res
, vol.19
, pp. 2036-2051
-
-
Hufton, A.L.1
-
51
-
-
0344171940
-
Intronic enhancers control expression of zebrafish sonic hedgehog in floor plate and notochord
-
Muller, F. et al. Intronic enhancers control expression of zebrafish sonic hedgehog in floor plate and notochord. Development 126, 2103-2116 (1999). (Pubitemid 29271696)
-
(1999)
Development
, vol.126
, Issue.10
, pp. 2103-2116
-
-
Muller, F.1
Chang, B.-E.2
Albert, S.3
Fischer, N.4
Tora, L.5
Strahle, U.6
-
52
-
-
37849027508
-
The Hedgehog gene family of the cnidarian, Nematostella vectensis, and implications for understandingmetazoan Hedgehog pathway evolution
-
Matus, D. Q., Magie, C. R., Pang, K., Martindale, M. Q. & Thomsen, G. H. The Hedgehog gene family of the cnidarian, Nematostella vectensis, and implications for understandingmetazoan Hedgehog pathway evolution. Dev Biol 313, 501-518 (2008).
-
(2008)
Dev Biol
, vol.313
, pp. 501-518
-
-
Matus, D.Q.1
Magie, C.R.2
Pang, K.3
Martindale, M.Q.4
Thomsen, G.H.5
-
53
-
-
33748305741
-
Evidence that mechanisms of fin development evolved in the midline of early vertebrates
-
DOI 10.1038/nature04984, PII NATURE04984
-
Freitas, R., Zhang, G. & Cohn, M. J. Evidence that mechanisms of fin development evolved in the midline of early vertebrates. Nature 442, 1033-1037 (2006). (Pubitemid 44330259)
-
(2006)
Nature
, vol.442
, Issue.7106
, pp. 1033-1037
-
-
Freitas, R.1
Zhang, G.2
Cohn, M.J.3
-
54
-
-
0033769340
-
Amphioxus alcohol dehydrogenase is a class 3 form of single type and of structural conservation but with unique developmental expression
-
Cañestro, C. et al. Amphioxus alcohol dehydrogenase is a class 3 form of single type and of structural conservation but with unique developmental expression. Eur J Biochem 267, 6511-6518 (2000).
-
(2000)
Eur J Biochem
, vol.267
, pp. 6511-6518
-
-
Cañestro, C.1
-
55
-
-
0031955518
-
Base-calling of automated sequencer traces using phred. I. Accuracy assessment
-
Ewing, B., Hillier, L., Wendl, M. C. & Green, P. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8, 175-185 (1998). (Pubitemid 28177229)
-
(1998)
Genome Research
, vol.8
, Issue.3
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.C.3
Green, P.4
-
56
-
-
0031955116
-
Consed: A graphical tool for sequence finishing
-
Gordon, D., Abajian, C. & Green, P. Consed: a graphical tool for sequence finishing. Genome Res 8, 195-202 (1998). (Pubitemid 28177231)
-
(1998)
Genome Research
, vol.8
, Issue.3
, pp. 195-202
-
-
Gordon, D.1
Abajian, C.2
Green, P.3
-
57
-
-
0031978181
-
Base-calling of automated sequencer traces using phred. II. Error probabilities
-
Ewing, B. & Green, P. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 8, 186-194 (1998). (Pubitemid 28177230)
-
(1998)
Genome Research
, vol.8
, Issue.3
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
58
-
-
0034518158
-
Vista: Visualizing global DNA sequence alignments of arbitrary length
-
Mayor, C. et al. VISTA : visualizing global DNA sequence alignments of arbitrary length. Bioinformatics 16, 1046-1047 (2000). (Pubitemid 32051021)
-
(2000)
Bioinformatics
, vol.16
, Issue.11
, pp. 1046-1047
-
-
Mayor, C.1
Brudno, M.2
Schwartz, J.R.3
Poliakov, A.4
Rubin, E.M.5
Frazer, K.A.6
Pachter, L.S.7
Dubchak, I.8
-
59
-
-
0037398368
-
LAGAN and Multi-LAGAN: Efficient tools for large-scale multiple alignment of genomic DNA
-
DOI 10.1101/gr.926603
-
Brudno, M. et al. LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA. Genome Res 13, 721-731 (2003). (Pubitemid 36511930)
-
(2003)
Genome Research
, vol.13
, Issue.4
, pp. 721-731
-
-
Brudno, M.1
Do, C.B.2
Cooper, G.M.3
Kim, M.F.4
Davydov, E.5
Green, E.D.6
Sidow, A.7
Batzoglou, S.8
-
60
-
-
80051936630
-
Using the Acropora digitifera genome to understand coral responses to environmental change
-
Shinzato, C. et al. Using the Acropora digitifera genome to understand coral responses to environmental change. Nature 476, 320-323 (2011).
-
(2011)
Nature
, vol.476
, pp. 320-323
-
-
Shinzato, C.1
-
61
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck, J. P. & Ronquist, F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754-755 (2001). (Pubitemid 32851390)
-
(2001)
Bioinformatics
, vol.17
, Issue.8
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
62
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
DOI 10.1093/bioinformatics/btg180
-
Ronquist, F. & Huelsenbeck, J. P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572-1574 (2003). (Pubitemid 37038874)
-
(2003)
Bioinformatics
, vol.19
, Issue.12
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
63
-
-
18744382506
-
ProtTest: Selection of best-fit models of protein evolution
-
DOI 10.1093/bioinformatics/bti263
-
Abascal, F., Zardoya, R. & Posada, D. ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21, 2104-2105 (2005). (Pubitemid 40668057)
-
(2005)
Bioinformatics
, vol.21
, Issue.9
, pp. 2104-2105
-
-
Abascal, F.1
Zardoya, R.2
Posada, D.3
-
64
-
-
80054787751
-
Contrasting 59 and 39 evolutionary histories and frequent evolutionary convergence in Meis/hth gene structures
-
Irimia, M. et al. Contrasting 59 and 39 Evolutionary Histories and Frequent Evolutionary Convergence in Meis/hth Gene Structures. Genome Biol Evol 3, 551-564 (2011).
-
(2011)
Genome Biol Evol
, vol.3
, pp. 551-564
-
-
Irimia, M.1
-
65
-
-
49749110720
-
Gene expansion and retention leads to a diverse tyrosine kinase superfamily in amphioxus
-
D'Aniello, S. et al. Gene expansion and retention leads to a diverse tyrosine kinase superfamily in amphioxus. Mol Biol Evol 25, 1841-1854 (2008).
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1841-1854
-
-
D'Aniello, S.1
-
66
-
-
70349085853
-
Zebrafish enhancer detection (ZED) vector: A new tool to facilitate transgenesis and the functional analysis of cis-regulatory regions in zebrafish
-
Bessa, J. et al. Zebrafish enhancer detection (ZED) vector: a new tool to facilitate transgenesis and the functional analysis of cis-regulatory regions in zebrafish. Dev Dyn 238, 2409-2417 (2009).
-
(2009)
Dev Dyn
, vol.238
, pp. 2409-2417
-
-
Bessa, J.1
-
67
-
-
33846065848
-
Odd-skipped genes encode repressors that control kidney development
-
DOI 10.1016/j.ydbio.2006.08.063, PII S0012160606011493
-
Tena, J. J. et al. Odd-skipped genes encode repressors that control kidney development. Dev Biol 301, 518-531 (2007). (Pubitemid 46073980)
-
(2007)
Developmental Biology
, vol.301
, Issue.2
, pp. 518-531
-
-
Tena, J.J.1
Neto, A.2
De La Calle-Mustienes, E.3
Bras-Pereira, C.4
Casares, F.5
Gomez-Skarmeta, J.L.6
|