Persistent genetic signatures of historic climatic events in an Antarctic octopus

Molecular Ecology

Volumn 21, Issue 11, 2012, Pages 2775-2787

  Strugnell, J M ^a   Watts, P C ^b   Smith, P J ^c   Allcock, A L ^d  

^a LA TROBE UNIVERSITY   (Australia)

^b UNIVERSITY OF LIVERPOOL   (United Kingdom)

^c MUSEUM VICTORIA   (Australia)

^d NATIONAL UNIVERSITY OF IRELAND   (Ireland)

Author keywords

circumpolar distribution; glacial cycles; octopod; population structure; southern ocean

Indexed keywords

CYTOCHROME C OXIDASE; MICROSATELLITE DNA; MITOCHONDRIAL DNA;

ANIMAL; ANTARCTICA; ARTICLE; ECOSYSTEM; GENE FLOW; GENETIC VARIABILITY; GENETICS; ICE COVER; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; OCTOPUS; PHYLOGEOGRAPHY; POPULATION GENETICS;

ANIMALS; ANTARCTIC REGIONS; DNA, MITOCHONDRIAL; ECOSYSTEM; ELECTRON TRANSPORT COMPLEX IV; EVOLUTION, MOLECULAR; GENE FLOW; GENETIC VARIATION; GENETICS, POPULATION; ICE COVER; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; OCTOPODIFORMES; PHYLOGEOGRAPHY;

OCTOPODA; OCTOPUS; PARELEDONE TURQUETI;

EID: 84861572992     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2012.05572.x     Document Type: Article

References (60)

1. Allcock AL, Brierley AS, Thorpe JP, et al. (1997) Restricted gene flow and evolutionary divergence between geographically separated populations of the Antarctic octopus Pareledone turqueti. Marine Biology, 129, 97-102.
2. Allcock AL, Barratt I, Eléaume M, et al. (2011) Cryptic speciation and the circumpolarity debate: a case study on endemic Southern Ocean octopuses using the coxI barcode of life. Deep Sea Research Part II: Topical Studies in Oceanography, 58, 242-249.
3. Allen CS, Pike J, Pudsey CJ, (2011) Last glacial-interglacial sea-ice cover in the SW Atlantic and its potential role in global deglaciation. Quaternary Science Reviews, 30, 2446-2458.
4. Baird HP, Miller KJ, Stark JS, (2011) Evidence of hidden biodiversity, ongoing speciation and diverse patterns of genetic structure in giant Antarctic amphipods. Molecular Ecology, 20, 3439-3454.
5. Barnes DKA, Hillenbrand C-D, (2010) Faunal evidence for a later quaternary trans-Antarctic seaway. Global Change Biology, 16, 3297-3303.
6. Barratt IM, Johnson MP, Allcock AL, (2007) Fecundity and reproductive strategies in deep-sea incirrate octopuses. Marine Biology, 150, 387-398.
7. Barratt IM, Johnson MP, Allcock AL, (2008) Female reproductive biology of two sympatric incirrate octopod species, Adelieledone polymorpha (Robson 1930) and Pareledone turqueti (Joubin 1905) (Cephalopoda: Octopodidae), from South Georgia. Polar Biology, 31, 583-594.
8. Boletzky SV, (1974) The larvae of cephalopoda: a review. Thalassia Jugoslavica, 10, 45-76.
9. Clarke A, Crame JA, (1989) The origin of the southern ocean marine fauna. In: Origins and evolution of the Antarctic biota (ed., Crame JA,), pp. 253-268. The Geological Society, London.
10. Clarke A, Crame JA, (1992) Evolution of Antarctic benthos. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 338, 299-309.
11. Clarke A, Crame JA, (2003) Importance of historical processes in global patterns of diversity. In: Macroecology: Concepts and Consequences (eds, Blackburn TM, and, Gaston KJ,), pp. 130-151. Blackwell, Malden MA.
12. Clement M, Posada D, Crandall KA, (2000) TCS: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657-1659.
13. Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7, 214.
14. Drummond AJ, Rambaut A, Shapiro B, Pybus OG, (2005) Bayesian coalescent inference of past population dynamics from molecular sequences. Molecular Biology and Evolution, 22, 1185-1192.
15. Evanno GS, Regnaut S, Goudet J, (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Molecular Ecology, 14, 2611-2620.
16. Excoffier L, Laval G, Schneider S, (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 47-50.
17. Fraser CI, Nikula R, Spencer HG, et al. (2009) Kelp genes reveal effects of subantarctic sea ice during the last glacial maximum. Proceedings of the National Academy of Sciences of the United States of America, 106, 3249-3253.
18. Fu YX, Li WH, (1993) Statistical tests of neutrality of mutations. Genetics, 133, 693-709.
19. Gersonde R, Crosta X, Abelmann A, et al. (2005) Sea-surface temperature and sea ice distribution of the Southern Ocean at the EPILOG last Glacial maximum-a circum-Antarctic view based on siliceous microfossil records. Quaternary Science Reviews, 24, 869-896.
20. Goudet J, (1995) FSTAT (vers.1.2): a computer program to calculate F-statistics. Journal of Heredity, 86, 485-486.
21. Graham AGC, Fretwell RD, Larter DA, et al. (2008) A new bathymetric compilation highlighting extensive paleo-ice sheet drainage on the continental shelf, South Georgia, sub-Antarctica. Geochemistry Geophysics Geosystems, 9, Q07011.
22. Harpending HC, (1994) Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. Human Biology, 66, 591-600.
23. Ho SYW, Larson G, (2006) Molecular clocks: when times are a-changin'. Trends in Genetics, 22, 79-83.
24. Hoffman JI, Clarke A, Linse K, et al. (2010) Effects of brooding and broadcasting reproductive modes on the population genetic structure of two Antarctic gastropod molluscs. Marine Biology, 158, 287-296.
25. Hoffman JI, Clarke AC, Linse K, et al. (2011) Strong population genetic structure in a broadcast-spawning Antarctic marine invertebrate. Journal of Heredity, doi: 10.1093/jhered/esq094.
26. Hunter RL, Halanych KM, (2008) Evaluating connectivity in the brooding brittle star Astrotoma agassizii across the Drake Passage in the Southern Ocean. Journal of Heredity, 99, 137-148.
27. Hunter RL, Halanych KM, (2010) Phylogeography of the Antarctic planktotrophic brittle star Ophionotus victoriae reveals genetic structure inconsistent with early life history. Marine Biology, 157, 1693-1704.
28. Krabbe K, Leese F, Mayer C, et al. (2010) Cryptic mitochondrial lineages in the widespread pycnogonid Colossendeis megalonyx Hoek, 1881 from Antarctic and Subantarctic waters. Polar Biology, 33, 281-292.
29. Kuhn KL, Gaffney PM, (2006) Preliminary assessment of population structure in the mackerel icefish (Champsocephalus gunnari). Polar Biology, 29, 927-935.
30. Leese F, Agrawal S, Held C, (2010) Long-distance island hopping without dispersal stages: transportation across major zoogeographic barriers in a Southern Ocean isopod. Naturwissenschaften, 97, 583-594.
31. Linse K, Griffiths HJ, Barnes DKA, et al. (2006) Biodiversity and biogeography of Antarctic and sub-Antarctic Mollusca. Deep-Sea Research II, 53, 985-1008.
32. Linse K, Cope T, Lörz A-N, et al. (2007) Is the Scotia Sea a centre of Antarctic marine diversification? Some evidence of cryptic speciation in the circum-Antarctic bivalve Lissarca notorcadensis (Arcoidea: Philobryidae). Polar Biology, 30, 1059-1068.
33. Matschiner M, Hanel R, Salzburger W, (2009) Gene flow by larval dispersal in the Antarctic notothenioid fish Gobionotothen gibberifrons. Molecular Ecology, 18, 2574-2587.
34. Moore WS, (1995) Inferring phylogenies from mtDNA variation: mitochondrial-gene trees versus nuclear-genetrees. Evolution, 49, 718-726.
35. Newman L, Convey P, Gibson JAE, et al. (2009) Antarctic paleobiology: glacial refugia and constraints on past ice-sheet reconstructions. PAGES News, 17, 22-24.
36. Nikula R, Fraser CI, Spencer HG, et al. (2010) Circumpolar dispersal by rafting in two subantarctic kelp-dwelling crustaceans. Marine Ecology Progress Series, 405, 221-230.
37. Pastene LA, Goto M, Kanda N, et al. (2007) Radiation and speciation of pelagic organisms during periods of global warming: the case of the common minke whale, Balaenoptera acutorostrata. Molecular Ecology, 16, 1481-1495.
38. Patarnello T, Volckaert FAMJ, Castilho R, (2007) Pillars of Hercules: is the Atlantic Mediterranean transition a phylogeographical break? Molecular Ecology, 16, 4426-4444.
39. Petit RJ, El Mousadik A, Pons O, (1998) Identifying populations for conservation on the basis of genetic markers. Conservation Biology, 12, 844-855.
40. Pollard D, DeConto RM, (2009) Modelling West Antarctic ice sheet growth and collapse through the past five million years. Nature, 458, 329-333.
41. Posada D, Crandall KA, (1998) Modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817-818.
42. Pritchard JK, Stephens M, Donnelly P, (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945-959.
43. Prothero DR, Berggren WA, (1992) Eocene Oligocene Climatic and Biotic Evolution, pp. 569. Princeton Univ. Press, Princeton, NJ.
44. Rambaut A, Drummond AJ, (2003) Tracer. MCMC trace analysis tool version v1.5.0.
45. Raupach MJ, Thatje S, Dambach J, et al. (2010) Genetic homogeneity and circum-Antarctic distribution of two benthic shrimp species of the Southern Ocean, Chorismus antarcticus and Nematocarcinus lanceopes. Marine Biology, 157, 1783-1797.
46. Rogers AD, (2007) Evolution and biodiversity of Antarctic organisms: a molecular perspective. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 1488, 2191-2214.
47. Rogers AR, Harpending H, (1992) Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution, 9, 552-569.
48. Scherer RP, Aldahan A, Tulaczyk S, et al. (1998) Pleistocene Collapse of the West Antarctic Ice sheet. Science, 281, 82-85.
49. Schneider S, Excoffier L, (1999) Estimation of demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: application to human mitochondrial DNA. Genetics, 152, 1079-1089.
50. Shaw PW, Arkhipkin AI, Al-Khairulla H, (2004) Genetic structuring of Patagonian toothfish populations in the Southwest Atlantic Ocean: the effect of the Antarctic Polar Front and deep-water troughs as barriers to genetic exchange. Molecular Ecology, 13, 3293-3303.
51. Sokolov S, Rintoul SR, (2007) On the relationship between fronts of the Antarctic Circumpolar Current and surface chlorophyll concentrations in the Southern Ocean. Journal of Geophysical Research, 112, C07030.
52. Stamatakis A, (2006) RAxML-VI-HPC: maximum likelihood based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics, 22, 2688-2690.
53. Strugnell J, Rogers AD, Prodöhl PA, et al. (2008) The thermohaline expressway: the Southern Ocean as a centre of origin for deep-sea octopuses. Cladistics, 24, 1-8.
54. Strugnell JM, Allcock AL, Watts PC, (2009) A panel of microsatellite loci from two species of octopus, Pareledone turqueti (Joubin, 1905) and Pareledone charcoti (Joubin, 1902). Molecular Ecology Resources, 9, 1239-1242.
55. Sullivan J, Swofford DL, Naylor GJP, (1999) The effect of taxon sampling on estimating rate heterogeneity parameters of maximum-likelihood models. Molecular Biology and Evolution, 16, 1347-1356.
56. Thatje S, Hillenbrand C-D, Larter R, (2005) On the origin of Antarctic marine benthic community structure. Trends in Ecology and Evolution, 20, 534-540.
57. Thornhill DJ, Mahon AR, Norenburg J, et al. (2008) Open-ocean barriers to dispersal: a test case with the Antarctic Polar Front and the ribbon worm Parborlasia corrugatus (Nemertea:Lineidae). Molecular Ecology, 17, 5104-5117.
58. Wilson AC, Cann RL, Carr SM, et al., (1985) Mitochondrial DNA and two perspectives on evolutionary genetics. Biological Journal of the Linnean Society, 26, 375-400.
59. Wilson NG, Schrödl M, Halanych KM, (2009) Ocean barriers and glaciation: evidence for explosive radiation of mitochondrial lineages in the Antarctic sea slug Doris kerguelenensis (Mollusca, Nudibranchia). Molecular Ecology, 18, 965-984.
60. Yang Z, (1993) Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Molecular Biology and Evolution, 10, 1396-1401.