FISHprep: A novel integrated device for metaphase FISH sample preparation

Micromachines

Volumn 2, Issue 2, 2011, Pages 116-128

  Shah, Pranjul ^a   Vedarethinam, Indumathi ^a   Kwasny, Dorota ^a   Andresen, Lars ^a,b   Skov, Søren ^b   Silahtaroglu, Asli ^b   Tümer, Zeynep ^c   Dimaki, Maria ^a   Svendsen, Winnie E ^a  

^a TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

^b UNIVERSITY OF COPENHAGEN   (Denmark)

^c JOHN F KENNEDY INSTITUTE   (Denmark)

Author keywords

Chromosomal translocations; Chromosome spreading; Cytogenetics; Fluorescence in situ hybridization (FISH); Genetic analysis; Lab on chip; Metaphase FISH

Indexed keywords

CHROMOSOMAL TRANSLOCATIONS; CYTOGENETICS; FLUORESCENCE IN SITU HYBRIDIZATION; GENETIC ANALYSIS; LAB ON CHIP;

CELL CULTURE; CHROMOSOMES; FISH; FLUORESCENCE MICROSCOPY; PATIENT TREATMENT;

QUALITY CONTROL;

EID: 84861457713     PISSN: None     EISSN: 2072666X     Source Type: Journal    
DOI: 10.3390/mi2020116     Document Type: Article

References (49)

1. Liehr, T. Fluorescence In-Situ Hybridization (FISH): Application Guide, 1st ed.; Springer-Verlag: Berlin/Heidelberg, Germany, 2009; p. 451.
2. Ward, B.E.; Gersen, S.L.; Carelli, M.P.; McGuire, N.M.; Dackowski, W.R.; Weinstein, M.; Sandlin, C.; Warren, R.; Klinger, K.W. Rapid prenatal diagnosis of chromosomal aneuploidies by fluorescence in situ hybridization: Clinical experience with 4,500 specimens. Am. J. Hum. Genet. 1993, 52, 854-865.
3. Sasai, K.; Tanaka, R.; Kawamura, M.; Honjo, K.; Matsunaga, N.; Nakada, T.; Homma, K.; Fujimura, H. Chromosome spreading techniques for primary gastrointestinal tumors. J. Gastroenterol. 1996, 31, 505-511.
4. Nath, J.; Johnson, K.L. A review of fluorescence in situ hybridization (FISH): Current status and future prospects. Biotech. Histochem. 2000, 75, 54-78.
5. Tepperberg, J.; Pettenati, M.J.; Rao, P.N.; Lese, C.M.; Rita, D.; Wyandt, H.; Gersen, S.; White, B.; Schoonmaker, M.M. Prenatal diagnosis using interphase fluorescence in situ hybridization (FISH): 2-year multi-center retrospective study and review of the literature. Prenatal Diag. 2001, 21, 293-301.
6. Jiang, F.; Katz, R.L. Use of interphase fluorescence in situ hybridization as a powerful diagnostic tool in cytology. Diagn. Molecul. Pathol. 2002, 11, 47-57.
7. Squire, J.A.; Marrano, P.; Kolomietz, E. FISH in Clinical Cytogenetics; 1st ed.; Oxford Publisher: Oxford, New York, NY, USA, 2002.
8. Liehr, T.; Starke, H.; Heller, A.; Kosyakova, N.; Mrasek, K.; Gross, M.; Karst, C.; Steinhaeuser, U.; Hunstig, F.; Fickelscher, I.; Kuechler, A.; Trifonov, V.; Romanenko, S.A.; Weise, A. Multicolor fluorescence in situ hybridization (FISH) applied to FISH-banding. Cytogenet. Genome Res. 2006, 114, 240-244.
9. Weise, A.; Liehr, T. Fluorescence in situ hybridization for prenatal screening of chromosomal aneuploidies. Expert Rev. Mol. Diagn. 2008, 8, 355-357.
10. Tanas, M.R.; Goldblum, J.R. Fluorescence In Situ Hybridization in the diagnosis of soft tissue neoplasms: A review. Adv. Anat. Pathol. 2009, 16, 383-391.
11. Braselmann, H.; Kulka, U.; Baumgartner, A.; Eder, C.; Muller, I.; Figel, M.; Zitzelsberger, H. SKY and FISH analysis of radiation-induced chromosome aberrations: A comparison of whole and partial genome analysis. Mutat. Res-Fundam. Mol. Mech. Mut. 2005, 578, 124-133.
12. Ried, T. Multiparametric fluorescence-in-situ-hybridization (fish) and spectral karyotyping (sky) in diagnosis of human malignancies. Cytometry Part A 2007, 71A, 22.
13. Takubo, K.; Fujita, M.; Izumiyama, N.; Nakamura, K.; Ishikawa, N.; Poon, S.S.; Fujiwara, M.; Sawabe, M.; Matsuura, M.; Grabsch, H.; Arai, T.O.; Aida, J. Q-FISH analysis of telomere and chromosome instability in the oesophagus with and without squamous cell carcinoma in situ. J. Pathol. 2010, 221, 201-209.
14. Bystricka, D.; Zemanova, Z.; Brezinova, J.; Gancarcikova, M.; Grosova, L.; Sarova, I.; Izakova, S.; Berkova, A.; Michalova, K. The assessment of array comparative genomic hybridization in complex karyotype analyses. Folia Biol. 2010, 56, 223-230.
15. Gue, M.; Messaoudi, C.; Sun, J.S.; Boudier, T. Smart 3D-FISH: Automation of distance analysis in nuclei of interphase cells by image processing. Cytometry Part A 2005, 67A, 18-26.
16. Raap, T. Colour barcoding genes by Fiber-FISH. Eur. J. Human Genet. 1998, 6, PL05.
17. van de Rijke, F.M.; Florijn, R.J.; Tanke, H.J.; Raap, A.K. DNA fiber-FISH staining mechanism. J. Histochem. Cytochem. 2000, 48, 743-745.
18. Volpi, E.V.; Bridger, J.M. FISH glossary: An overview of the fluorescence in situ hybridization technique. Biotechniques 2008, 45, 385.
19. Sieben, V.J.; Marun, C.S.D.; Pilarski, P.M.; Kaigala, G.V.; Pilarski, L.M.; Backhouse, C.J. FISH and chips: Chromosomal analysis on microfluidic platforms. IEEE Nanobiotechnol. 2007, 1, 27-35.
20. Sieben, V.J.; Debes-Marun, C.S.; Pilarski, L.M.; Backhouse, C.J. An integrated microfluidic chip for chromosome enumeration using fluorescence in situ hybridization. Lab Chip 2008, 8, 2151-2156.
21. Zanardi, A.; Bandiera, D.; Bertolini, F.; Corsini, C.A.; Gregato, G.; Milani, P.; Barborini, E.; Carbone, R. Miniaturized FISH for screening of onco-hematological malignancies. Biotechniques 2010, 49, 497-504.
22. Jobanputra, V.; Sobrino, A.; Kinney, A.; Kline, J.; Warburton, D. Multiplex interphase FISH as a screen for common aneuploidies in spontaneous abortions. Human Reprod. 2002, 17, 1166-1170.
23. Pergament, E.; Chen, P.X.; Thangavelu, M.; Fiddler, M. The clinical application of interphase FISH in prenatal diagnosis. Prenatal Diag. 2000, 20, 215-220.
24. Garson, J.A.; Vandenberghe, J.A.; Kemshead, J.T. High-resolution in situ hybridization technique using biotinylated NMYC oncogene probe reveals periodic structure of HSRs in human neuroblastoma. Cytogenet. Cell Genet. 1987, 45, 10-15.
25. Garson, J.A.; Vandenberghe, J.A.; Kemshead, J.T. Novel non-isotopic in situ hybridization technique detects small (1 Kb) unique sequences in routinely G-banded human chromosomes: Fine mapping of N-myc and beta-NGF genes. Nucl. Acid. Res. 1987, 15, 4761-4770.
26. Cremer, T.; Lichter, P.; Borden, J.; Ward, D.C.; Manuelidis, L. Detection of chromosome aberrations in metaphase and interphase tumor cells by in situ hybridization using chromosome-specific library probes. Human Genet. 1988, 80, 235-246.
27. Julien, C.; Bazin, A.; Guyot, B.; Forestier, F.; Daffos, F. Rapid prenatal diagnosis of Down's syndrome with in-situ hybridisation of fluorescent DNA probes. Lancet 1986, 2, 863-864.
28. Guyot, B.; Bazin, A.; Sole, Y.; Julien, C.; Daffos, F.; Forestier, F. Prenatal diagnosis with biotinylated chromosome specific probes. Prenatal Diag. 1988, 8, 485-493.
29. Stumm, M.; Wegner, R.D.; Bloechle, M.; Eckel, H. Interphase M-FISH applications using commercial probes in prenatal and PGD diagnostics. Cytogenet. Genome Res. 2006, 114, 296-301.
30. Dziubinski, J.M.; Sarosdy, M.F.; Kahn, P.R.; Ziffer, M.D.; Love, W.R.; Zadra, J.A.; Schellhammer, P.F.; Bokinsky, G.B.; Stenzel, T.T. Multiple fluorescence in situ hybridization (FISH) probes increase sensitivity for detection of bladder cancer. J. Urol. 2006, 175, 890.
31. Brown, J.; Saracoglu, K.; Uhrig, S.; Knight, S.J.L.; Lucas, S.J.A.; Speicher, M.R.; Eils, R.; Kearney, L. Development of a multicolour FISH assay for subtelomeric chromosome rearrangements in leukaemia. Cytogenet. Cell Genet. 1999, 85, 18.
32. Kearney, L. The impact of the new fish technologies on the cytogenetics of haematological malignancies. Brit. J. Haematol. 1999, 104, 648-658.
33. Kearney, L. Multiplex-FISH (M-FISH): Technique, developments and applications. Cytogenet. Genome Res. 2006, 114, 189-198.
34. Insabato, L.; Bernasconi, B.; Glatz, K.; Dirnhofer, S.; Krugman, J.; Fend, F.; Capella, C.; Tibiletti, M.G.; Di Vizio, D.; Pettinato, G.; Sauter, G.; Tornillo, L.; Terracciano, L. High-throughput tissue microarray FISH analysis in 226 surgically resected gastric B-cell lymphomas. Frequencies of trisomy 1,3,12 and gains of X chromosome. Lab. Invest. 2002, 82, 541.
35. Tibiletti, M.G. Interphase FISH as a new tool in tumor pathology. Cytogenet. Genome Res. 2007, 118, 229-236.
36. Xu, J.; Chen, Z. Advances in molecular cytogenetics for the evaluation of mental retardation. Am. J. Med. Genet. Part C 2003, 117C, 15-24.
37. Smith, G.D.; Riding, M.; Oswald, K.; Bentz, J.S. Integrating a FISH imaging system into the cytology laboratory. Cyto J. 2010, 7, DOI: 10.4103/1742-6413.62258.
38. Vedarethinam, I.; Shah, P.; Dimaki, M.; Tumer, Z.; Tommerup, N.; Svendsen, W.E. Metaphase FISH on a Chip: Miniaturized Microfluidic Device for Fluorescence in situ Hybridization. Sensors 2010, 10, 9831-9846.
39. American College of Medical Genetics. Prenatal interphase fluorescence in situ hybridization (FISH) policy statement. Am. J. Human Genet. 1993, 53, 526-527.
40. Schwartz, S. Efficacy and applicability of interphase fluorescence in situ hybridization for prenatal diagnosis. Am. J. Human Genet. 1993, 52, 851-853.
41. Christel, E.-S.; Stefan, G.; Inga, N.; Andrea, H.; Susanne, B.; Simone, H.; Monika, K.; Christian, T.; Reiner, S.; Almuth, C. Conflicting results of prenatal FISH with different probes for Down's Syndrome critical regions associated with mosaicism for a de novo del(21)(q22) characterised by molecular karyotyping: Case report. Mol. Cytogenet. 2010, 3, doi:10.1186/1755-8166-3-16.
42. Claussen, U.; Michel, S.; Muhlig, P.; Westermann, M.; Grummt, U.W.; Kromeyer-Hauschild, K.; Liehr, T. Demystifying chromosome preparation and the implications for the concept of chromosome condensation during mitosis. Cytogenet. Genome Res. 2002, 98, 136-146.
43. Hliscs, R.; Muhlig, P.; Claussen, U. The spreading of metaphases is a slow process which leads to a stretching of chromosomes. Cytogenet. Cell Genet. 1997, 76, 167-171.
44. Henegariu, O.; Heerema, N.A.; Wright, L.L.; Bray-Ward, P.; Ward, D.C.; Vance, G.H. Improvements in cytogenetic slide preparation: Controlled chromosome spreading, chemical aging and gradual denaturing. Cytometry 2001, 43, 101-109.
45. Qu, Y.Y.; Xing, L.Y.; Hughes, E.D.; Saunders, T.L. Chromosome dropper tool: Effect of slide angles on chromosome spread quality for murine embryonic stem cells. J. Histotechnol. 2008, 31, 75-79.
46. Yamada, K.; Kakinuma, K.; Tateya, H.; Miyasaka, C. Development of an instrument for chromosome slide preparation. J. Radiat. Res. 1992, 33, 242-249.
47. Sabourin, D.; Dufva, M.; Jensen, T.; Kutter, J.; Snakenborg, D. One-step fabrication of microfluidic chips with in-plane, adhesive-free interconnections. J. Micromechanic. Microengineer 2010, 20, 037001-037008.
48. Haubert, K.; Drier, T.; Beebe, D. PDMS bonding by means of a portable, low-cost corona system. Lab Chip 2006, 6, 1548-1549.
49. Yeon, J.H.; Park, J.K. Microfluidic cell culture systems for cellular analysis. Biochip J. 2007, 1, 17-27.