Genome size and chromosome number in Echinops (Asteraceae, Cardueae) in the Aegean and Balkan regions: Technical aspects of nuclear DNA amount assessment and genome evolution in a phylogenetic frame

Plant Systematics and Evolution

Volumn 298, Issue 6, 2012, Pages 1085-1099

  Sánchez Jiménez, Ismael ^a   Hidalgo, Oriane ^b,c   Canela, Miguel Ángel ^d   Siljak Yakovlev, Sonja ^e   Šolić, Marija Edita ^f   Vallès, Joan ^c   Garnatje, Teresa ^a  

^a INSTITUT BOTÀNIC DE BARCELONA IBB CSIC ICUB   (Spain)

^b OHIO UNIVERSITY   (United States)

^c UNIVERSITY OF BARCELONA   (Spain)

^d IESE BUSINESS SCHOOL   (Spain)

^e UNIVERSITÉ PARIS SUD   (France)

^f Institute Mountain and Sea   (Croatia)

Author keywords

Compositae; Flow cytometry; Karyology; Phylogeny

Indexed keywords

ASTERACEAE; CARDUEAE; ECHINOPS (PLANT); ECHINOPS BANNATICUS; ECHINOPS SPHAEROCEPHALUS; ECHINOPS SPINOSISSIMUS;

EID: 84861436763     PISSN: 03782697     EISSN: 16156110     Source Type: Journal    
DOI: 10.1007/s00606-012-0618-4     Document Type: Article

References (69)

1. Bainard JD, Husband BC, Baldwin SJ, Fazekas AJ, Gregory TR, Newmaster SG, Kron P (2011) The effects of rapid desiccation on estimates of plant genome size. Chromosome Res 19: 825-842.
2. Bennett MD (1972) Nuclear DNA content and minimum generation time in herbaceous plants. Proc R Soc Lond Ser B 181: 109-135.
3. Bobrov EG (1997) Echinops L. In: Shishkin BK, Bobrov EG (eds) Flora of the URRS, vol 27. Dehra Dun, Bishen Singh, Mahendra Pal Singh, Koeltz Scientific Books, Koenigstein, pp 1-70.
4. Chase MW, Hanson L, Albert VA, Whitten WM, Williams NH (2005) Life history evolution and genome size in subtribe Oncidiinae (Orchidaceae). Ann Bot 95: 191-199.
5. Chrtek J, Zahrádníček J, Krak K, Fehrer J (2009) Genome size in Hieracium subgenus Hieracium (Asteraceae) is strongly correlated with major phylogenetic groups. Ann Bot 104: 161-178.
6. Cires E, Cuesta C, Peredo EL, Revilla MA, Fernández Prieto JA (2009) Genome size varition and morphological differentiation within Ranunculus parnassifolius group (Ranunculaceae) from calcareous screes in the Northwest of Spain. Plant Syst Evol 281: 193-208.
7. Cullings KW (1992) Design and testing of a plant-specific PCR primer for ecological and evolutionary studies. Mol Ecol 1: 233-240.
8. Díaz-Uriarte R (2010) Package PHYLOGR, http://cran. es. r-project. org.
9. Doležel J (1991) Flow cytometric analysis of nuclear DNA content in higher plants. Phytochem Anal 2: 143-154.
10. Doležel J, Bartoš J (2005) Plant DNA flow cytometry and estimation of nuclear genome size. Ann Bot 95: 99-110.
11. Doležel J, Binarová P, Lucretti S (1989) Analysis of nuclear DNA content in plant cells by flow cytometry. Biol Plant 31: 113-120.
12. Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19: 11-15.
13. Dušková E, Kolář F, Sklenář P, Rauchová J, Kubešová M, Fér T, Suda J, Marhold K (2010) Genome size correlates with growth form, habitat and phylogeny in the Andean genus Lasiocephalus (Asteraceae). Preslia 82: 127-148.
14. Garcia S, Canela MÁ, Garnatje T, McArthur ED, Pellicer J, Sanderson SC, Vallès J (2008) Evolutionary and ecological implications of genome size in the North American endemic sagebrushes and allies (Artemisia, Asteraceae). Biol J Linn Soc 94: 631-649.
15. Garcia S, Sanz M, Garnatje T, Kreitschitz A, McArthur DE, Vallès J (2004) Variation of DNA amount in 47 populations of the subtribe Artemisiinae and related taxa (Asteraceae, Anthemideae): karyological, ecological, and systematic implications. Genome 47: 1004-1014.
16. Garcia-Jacas N, Susanna A, Ilarlsan R (1996) Aneuploidy in the Centaureinae (Compositae): is n = 7 the end of the series? Taxon 45: 39-42.
17. Garnatje T, Canela MÁ, Garcia S, Hidalgo O, Pellicer J, Sánchez-Jiménez I, Siljak-Yakovlev S, Vitales D, Vallès J (2011) GSAD: a genome size in the Asteraceae database. Cytometry Part A 79A: 401-404.
18. Garnatje T, Garcia S, Canela MÁ (2007) Genome size variation from a phylognetic perspective in the genus Cheirolophus Cass. (Asteraceae): biogeographic implications. Plant Syst Evol 264: 117-134.
19. Garnatje T, Garcia S, Hidalgo O, Pellicer J, Sánchez-Jiménez I, Vallès J (2009) Cheirolophus intybaceus (Asteraceae, Centaureinae) o la constància del valor 2C. Collect Bot 28: 7-17.
20. Garnatje T, Vallès J, Garcia S, Hidalgo O, Sanz M, Canela MA, Siljak-Yakovlev S (2004a) Genome size in Echinops L. and related genera (Asteraceae, Cardueae): karyological, ecological and phylogenetic implications. Biol Cell 96: 117-124.
21. Garnatje T, Vilatersana R, Susanna A, Vallès J, Siljak-Yakovlev S (2004b) Contribution to the karyological knowledge of Echinops (Asteraceae, Cardueae) and related genera. Bot J Linn Soc 145: 337-344.
22. Georghiou K, Delipetrou P (2010) Patterns and traits of the endemic plants of Greece. Bot J Linn Soc 162: 130-422.
23. Greilhuber J, Temsch E, Loureiro J (2007) Nuclear DNA content measurement. In: Doležel J, Greilhuber J, Suda J (eds) Flow cytometry with plant cells. Wiley-VCH, Weinheim, pp 67-101.
24. Greuter W (2003) The Euro + Med treatment of Cardueae (Compositae)-generic concepts and required new names. Willdenowia 33: 49-61.
25. Greuter W (2006-2009) Compositae (pro parte majore), In: Greuter W, Raab-Straube E. von (eds) Compositae. Euro + Med Plantbase-the information resource for Euro-Mediterranean plant diversity. Published on the Internet http://ww2. bgbm. org/EuroPlusMed/ (Accesed 1 March 2011).
26. Gukasyan AG, Safarian AB (1990) Chromosome numbers of some representatives of Armenian flora. Biol Zh Arm 43: 259-260.
27. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41: 95-98.
28. Hayek A (1927) Prodomus florae peninsulae balcanicae, vol 2. Verlag, Berlin.
29. Hedge IC (1975) Echinops L. In: Davis PH (ed) Flora of Turkey and the East Aegean Islands, vol 5. Edinburgh University Press, Edinburgh, pp 609-622.
30. Hidalgo O, Garcia-Jacas N, Garnatje T, Romaschschenko K, Susanna A, Siljak-Yakovlev S (2008) Extreme environmental conditions and phylogenetic inheritance: systematics of Myopordon and Oligochaeta (Asteraceae, Cardueae-Centaureinae). Taxon 57: 769-778.
31. Hidalgo O, Garcia-Jacas N, Susanna A, Siljak-Yakovlev S (2007) Karyological evolution in Rhaponticum and related genera. Bot J Linn Soc 153: 193-201.
32. Hidalgo O, Mathez J, Garcia S, Garnatje T, Pellicer J, Vallès J (2010) Genome size study in the Valerianaceae: first results and new hypotheses. J Bot. doi: 10. 1155/2010/797246.
33. Jäger EJ (1987) Arealkarten der Asteraceen-Tribus als Grundlage der ökogeographischen Sippencharakteristik. Bot Jahrb Syst 108: 481-497.
34. Kožuharov SI (1976) Echinops L. In: Tutin TG, Heywood VH, Burges NA, Moore DM, Valentine DH, Walters SM, Webb DA (eds) Flora Europaea, vol 4. Cambridge University Press, Cambridge, pp 212-214.
35. Kraaijeveld K (2010) Genome size and species diversification. Evol Biol 37: 227-233.
36. Lavergne S, Muenke NJ, Molofsky J (2010) Genome size reduction can trigger rapid phenotypic evolution in invasive plants. Ann Bot 105: 109-116.
37. Leitch IJ, Soltis DE, Soltis PS, Bennett MD (2005) Evolution of DNA amounts across land plants (Embryophyta). Ann Bot 95: 207-217.
38. Magyari EK, Chapman JC, Gaydarska B, Marinova E, Deli T, Huntley JP, Allen JRM, Huntley B (2008) The "oriental" component of the Balkan flora: evidence of presence on the Thracian Plain during the Weichselian late-glacial. J Biogeogr 35: 865-883.
39. Médail F, Quézel P (1997) Hot-spots analysis for conservation of plant biodiversity in the Mediterranean Basin. Ann Mo Bot Gard 84: 112-127.
40. Muratovic E, Hidalgo O, Garnatje T, Siljak-Yakovlev S (2010) Molecular phylogeny and genome size in European lilies (genus Lilium, Liliaceae). Adv Sci Lett 3: 180-189.
41. Murray BG (2005) When does intraspecific C-value variation become taxonomically significant? Ann Bot 95: 119-125.
42. Nylander JAA (2004) MrModeltest, version 2. Program distributed by the author, Evolutionary Biology Centre, Uppsala University.
43. Ohri D (1998) Genome size variation and plant systematics. Ann Bot 82: 75-83.
44. Palomino G, Doležel J, Méndez I, Rubluo A (2003) Nuclear genome size analysis of Agave tequilana Weber. Caryologia 56: 37-46.
45. Pellicer J, Canela MÁ, Garcia S, Garnatje T, Korobkov AA, Twibell JD, Vallès J (2010) Genome size dynamics in Artemisia L. (Asteraceae): following the track of polyploidy. Plant Biol 12: 820-830.
46. Petit RJ, Brewer S, Bordács S et al (2002) Identification of refugia and post-glacial colonisation routes of European white oaks based on chloroplast DNA and fossil pollen evidence. For Ecol Manage 156: 49-74.
47. Popp M, Gizaw A, Nemomissa S, Suda J, Brochmann C (2008) Colonization and diversification in the African 'sky islands' by Eurasian Lychnis L. (Caryophyllaceae). J Biogeogr 35: 1016-1029.
48. Price HJ, Bachmann K (1976) Mitotic cell time and DNA content in annual and perennial Microserinidinae (Compositae, Chicoriaceae). Plant Syst Evol 126: 323-330.
49. Rechinger KH (1943) Flora Aegaea: Flora der Inseln und Halbinseln des Ägäischen Meeres. Springer, Vienna.
50. Rechinger KH (ed) (1979) Flora des Iranischen Hochlandes und der umrahmeden Gebirge. Compositae III-Cynareae, Akademische Druck-u, Verlaganstalt, Graz.
51. Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
52. Sánchez-Jiménez I, Lazkov GA, Hidalgo O, Garnatje T (2010) Molecular systematics of Echinops L. (Asteraceae, Cynareae): a phylogeny based on ITS and trnL-trnF sequences with emphasis on sectional delimitation. Taxon 59: 698-708.
53. Sánchez-Jiménez I, Pellicer J, Hidalgo O, Garcia S, Garnatje T, Vallès J (2009) Chromosome numbers in three Asteraceae tribes from inner Mongolia (China), with genome size data for Cardueae. Folia Geobot 44: 307-322.
54. Sheidai M, Nasirzadeh A, Kheradnam M (2000) Karyotypic study of Echinops (Asteraceae) in Fars Province, Iran. Bot J Linn Soc 134: 453-463.
55. Siljak-Yakovlev S, Solic ME, Catrice O, Brown SC, Papes D (2005) Nuclear DNA content and chromosome number in some diploid and tetraploid Centaurea (Asteraceae: Cardueae) from the Dalmatia region. Plant Biol 7: 397-404.
56. Siljak-Yakovlev S, Stevanovic V, Tomasevic M, Brown SC, Stevanovic B (2008) Genome size variation and polyploidy in the resurrection plant genus Ramonda: cytogeography of living fossils. Environ Exp Bot 62: 101-112.
57. Siljak-Yakovlev S, Pustahija F, Solic EM, Bogunic F, Muratovic E, Basic N, Catrice O, Brown SC (2010) Towards a genome size and chromosome number database of Balkan Flora: C-values in 343 taxa with novel values for 242. Adv Sci Lett 3: 190-213.
58. Slovák M, Urfus T, Vít P, Marhold K (2009) The Balkan endemic Picris hispidissima (Compositae): morphology, nuclear DNA content and relationship to the polymorphic P. hieracioides. Plant Syst Evol 278: 187-201.
59. Soltis DE, Soltis PS, Collier TG, Edgerton ML (1991) The Heuchera group (Saxifragaceae): evidence for chloroplast transfer and paraphyly. Am J Bot 78: 1091-1112.
60. Stevanovic V, Tan K, Iatrou G (2003) Distribution of the endemic Balkan flora on serpentine I.-obligate serpentine endemics. Plant Syst Evol 242: 149-170.
61. Suda J, Trávníček P (2006) Reliable DNA ploidy determination in dehydrated tissues of vascular plants by DAPI flow cytometry-New prospects for plant research. Cytom Part A 69A: 273-280.
62. Susanna A, Garcia-Jacas N, Hidalgo O, Vilatersana R, Garnatje T (2006) The Cardueae revisited: insights from ITS, trnL-F and matK nuclear and chloroplast DNA analysis. Ann Mo Bot Gard 93: 150-171.
63. Swift H (1950) The constance of desoxyribose nucleic acid in plant nuclei. Proc Natl Acad Sci USA 36: 643-654.
64. Temsch EM, Greilhuber J (2010) Genome size in Dipsacaceae and Morina longifolia (Morinaceae). Plant Syst Evol 289: 45-56.
65. Vilatersana R, Susanna A, Garcia-Jacas N, Garnatje T (2000) Karyology, generic delineation and dysploidy in the genera Carthamus, Carduncellus and Phonus (Asteraceae). Bot J Linn Soc 134: 425-438.
66. Vinogradov AE (2003) Selfish DNA is maladaptive: evidence from the plant Red List. Trends Genet 19: 609-614.
67. Watanabe K (2002) Index to chromosome numbers in the Asteraceae. http://www-asteraceae. cla. kobe-u. ac. jp/index. html (Accessed May 2011).
68. Watanabe K (2004) Index to chromosome numbers in the Asteraceae on the web. Compositae Newsl 41: 64.
69. Zhu S, Greuter W (2011) Asteraceae. Tribe Echinopeae [draft]. In: Wu ZY, Raven PH, Hong DY (eds) In preparation, flora of China (Asteraceae), vol 20-21. Science Press, Beijing, and Missouri Botanical Garden Press, St. Louis.