Genome size dynamics in Artemisia L. (Asteraceae): Following the track of polyploidy

Plant Biology

Volumn 12, Issue 5, 2010, Pages 820-830

  Pellicer, J ^a   Garcia, S ^b   Canela, M A ^a   Garnatje, T ^b   Korobkov, A A ^c   Twibell, J D ^d   Valles J ^a  

^a UNIVERSITY OF BARCELONA   (Spain)

^b INSTITUT BOTÀNIC DE BARCELONA IBB CSIC ICUB   (Spain)

^c KOMAROV BOTANICAL INSTITUTE   (Russian Federation)

^d NCCPG Artemisia Collection   (United Kingdom)

Author keywords

C value; Compositae; Evolution; Limit to nuclear DNA content; Mathematical functions; Nuclear DNA loss

Indexed keywords

DATA SET; DICOTYLEDON; FLOW CYTOMETRY; GENETIC ANALYSIS; GENOME; PHYLOGENETICS; POLYPLOIDY; SPECIATION (BIOLOGY); TAXONOMY;

ARTEMISIA; ASTERACEAE; CROSSOSTEPHIUM CHINENSE; EMBRYOPHYTA;

PLANT DNA; RIBOSOMAL SPACER DNA;

ARTEMISIA; ARTICLE; DNA SEQUENCE; FLOW CYTOMETRY; GENETICS; PHYLOGENY; PLANT GENOME; POLYPLOIDY;

ARTEMISIA; DNA, PLANT; DNA, RIBOSOMAL SPACER; FLOW CYTOMETRY; GENOME, PLANT; PHYLOGENY; POLYPLOIDY; SEQUENCE ANALYSIS, DNA;

EID: 78049392818     PISSN: 14358603     EISSN: 14388677     Source Type: Journal    
DOI: 10.1111/j.1438-8677.2009.00268.x     Document Type: Article

References (69)

1. Abbott R.J., Lowe A.J. (2004) Origins, establishment and evolution of new polyploid species: Senecio cambrensis and S. eboracensis in the British Isles. Botanical Journal of the Linnean Society, 82, 467-474.
2. Albach D.A., Greilhuber J. (2004) Genome size variation and evolution in Veronica. Annals of Botany, 94, 897-911.
3. Baldwin B.G., Markos S. (1998) Phylogenetic utility of the external transcribed spacer (ETS) of 18S-26 rDNA: congruence of ITS and ETS trees of Calycadenia (Compositae). Molecular Phylogenetics and Evolution, 10, 449-463.
4. Beaulieu J.M., Moles A.T., Leitch I.J., Bennett M.D., Dickie J.B., Knight C.A. (2007) Correlated evolution of genome size and seed mass. New Phytologist, 173, 422-437.
5. Bennett M.D., Leitch I.J. (2005a) Nuclear DNA amounts in angiosperms: progress, problems and prospects. Annals of Botany, 95, 45-90.
6. Bennett M.D., Leitch I.J. (2005b) Plant genome size research: a field in focus. Annals of Botany, 95, 1-6.
7. Bennett M.D., Smith J.B. (1976) Nuclear DNA amounts in angiosperms. Philosophical Transactions of the Royal Society of London. Series B. Biological Sciences, 274, 227-274.
8. Bennetzen J.L., Kellogg E.A. (1997) Do plants have a one-way ticket to genome obesity? Plant Cell, 9, 1509-1514.
9. Bennetzen J.L., Ma J., Devos K.M. (2005) Mechanism of recent genome size variation in flowering plants. Annals of Botany, 95, 127-132.
10. Bharathan G. (1996) Reproductive development and DNA nuclear content in angiosperms. American Journal of Botany, 83, 440-451.
11. Chase M.W., Hanson L., Albert V.A., Whitten W.M., Williams N.H. (2005) Life history evolution and genome size in subtribe Oncidiinae (Orchidaceae). Annals of Botany, 95, 191-199.
12. Chen Z.J. (2007) Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids. Annual Review of Plant Biology, 58, 377-406.
13. Cui L., Wall P.K., Leebens-Mack J.H., Lindsay B.G., Soltis D.E., Doyle J.J., Soltis P.S., Carlson J.E., Arumuganathan K., Barakat A., Albert V.A., Ma H., DePamphilis C.W. (2006) Widespread genome duplications throughout the history of flowering plants. Genome Research, 16, 738-749.
14. Dadejová M., Lim K.Y., Soucková-Skalická K., Matyášek R., Grandbastien M.A., Leitch A.R., Kovařík A. (2007) Transcription activity of rRNA genes correlates with a tendency towards intergenomic homogenization in Nicotiana allotetraploids. New Phytologist, 174, 658-668.
15. Devos K.M., Brown J.K.M., Bennetzen J.L. (2002) Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis. Genome Research, 12, 1075-1079.
16. Doležel J., Bartoš J. (2005) Plant DNA flow cytometry and estimation of nuclear genome size. Annals of Botany, 95, 99-110.
17. Doležel J., Bartoš J., Voglmayr H., Greilhuber J. (2003) Nuclear DNA content and genome size of trout and human. Cytometry, 51, 127-128.
18. Feldman M., Liu B., Segal G., Abbo S., Levy A.A., Vega J.M. (1997) Rapid elimination of low copy DNA sequences in polyploid wheat: a possible mechanism for differentiation of homologous chromosomes. Genetics, 147, 1381-1387.
19. Galbraith D.W., Harkins K.R., Maddox J.M., Ayres N.M., Sharma D.P., Firoozabady E. (1983) Rapid flow cytometric analysis of the cell cycle in intact plant tissues. Science, 220, 1049-1055.
20. Garcia S., Garnatje T., Dariimaa Sh., Tsooj Sh., Vallès J. (2004a) New or rarely reported chromosome numbers in taxa of subtribe Artemisiinae (Anthemideae, Asteraceae) from Mongolia. Botanical Journal of the Linnean Society, 150, 203-210.
21. Garcia S., Sanz M., Garnatje T., Kreitschitz A., McArthur E.D., Vallès J. (2004b) Variation of DNA amount of 47 populations of the Subtribe Artemisiinae and related taxa (Asteraceae, Anthemideae): karyological, ecological and systematic implications. Genome, 47, 1004-1014.
22. Garcia S., Garnatje T., Twibell J.D., Vallès J. (2006) Genome size variation in the Artemisia arborescens complex (Asteraceae, Anthemideae) and cultivars. Genome, 49, 244-253.
23. Garcia S., Canela M.Á., Garnatje T., McArthur E.D., Pellicer J., Sanderson S.C., Vallès J. (2008) Evolutionary and ecological implications of genome size in the North American endemic sagebrushes and allies (Artemisia, Asteraceae). Biological Journal of the Linnean Society, 94, 631-649.
24. Garnatje T., Vallès J., Garcia S., Hidalgo O., Sanz M., Canela M.Á., Siljak-Yakovlev S. (2004) Genome size in Echinops L. and related genera (Asteraceae, Cardueae): karyological, ecological and phylogenetic implications. Biology of the Cell, 96, 117-124.
25. Gregory T.R., Hebert P.D.N. (1999) The modulation of DNA content: proximate causes and ultimate consequences. Genome Research, 9, 317-324.
26. Greilhuber J., Doležel J., Lysák M.A., Bennett M.D. (2005) The origin, evolution and proposed stabilization of the terms "genome size" and "C-value" to describe nuclear DNA content. Annals of Botany, 95, 255-260.
27. Greilhuber J., Borsch T., Müller K., Worberg A., Porembski S., Barthlott W. (2006) Smallest Angiosperm Genomes Found in Lentibulariaceae, with Chromosomes of Bacterial Size. Plant Biology, 8, 770-777.
28. Huelsenbeck J.P., Ronquist F. (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754-755.
29. Kellogg E.A., Bennetzen J.L. (2004) The evolution of nuclear genome structure in seed plants. American Journal of Botany, 91, 1709-1725.
30. Kovařík A., Pires J.C., Leitch A.R., Lim Y.K., Sherwood A.M., Matyasek R., Rocca J., Soltis D.E., Soltis P.S. (2005) Rapid concerted evolution of nuclear ribosomal DNA in two Tragopogon allopolyploids of recent and recurrent origin. Genetics, 169, 931-944.
31. Leitch I.J., Bennett M.D. (2004) Genome downsizing in polyploid plants. Biological Journal of the Linnean Society, 82, 651-663.
32. Leitch I.J., Hanson L., Lim K.Y., Kovarik A., Chase M.W., Clarkson J.J., Leitch A.R. (2008) The ups and downs of genome size evolution in polyploid species of Nicotiana (Solanaceae). Annals of Botany, 101, 805-814.
33. Levy A.A., Feldman M. (2004) Genetic and epigenetic reprogramming of the wheat genome upon allopolyploidization. Biological Journal of the Linnean Society, 82, 607-613.
34. Ling Y.R. (1982) On the system of the genus Artemisia L. and the relationship with its allies. Bulletin of the Laboratory of the North-East Forest Institute, 2, 1-60.
35. Malakhova L.A. (1990) Kariologocheskii analiz prirodnykh populjatsii redkich i ischezajushikh rastenii na juge Tomskoi oblasti. Izvestija Glavnogo Botaničeskogo Sada SSSR, 155, 60-66.
36. Marie D., Brown S.C. (1993) A cytrometric exercise in plant DNA histograms, with 2C values for 70 species. Biology of the Cell, 78, 41-51.
37. Masterson J. (1994) Stomatal size in fossil plants - evidence for polyploidy in the majority of angiosperms. Science, 264, 421-424.
38. Mirsky A.E., Ris H. (1951) The desoxyribonucleic acid content of animal cells and its evolutionary significance. Journal of General Physiology, 34, 451-462.
39. Nylander J.A. (2004) MrModeltest v.2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden.
40. Oberprieler Ch., Vogt R., Watson L.E. (2007). Tribe Anthemideae. In: Kubitzki K.. (Ed.), The families and genera of vascular plants. In: Kadereit J.W., Jeffrey C., (Eds), Flowering plants vol. VIII. Eudicots. Asterales. Springer-Verlag, Berlin, Germany: pp 342-374.
41. Otto S.P., Whitton J. (2000) Polyploid incidence and evolution. Annual Review of Genetics, 34, 401-437.
42. Ozkan H., Levy A.A., Feldman M. (2001) Allopolyploidy induced rapid genome evolution in the wheat (Aegilops-Triticum) group. Plant Cell, 13, 1735-1747.
43. Pellicer J., Garcia S., Garnatje T., Dariimaa Sh., Korobkov A.A., Vallès J. (2007a) Chromosome numbers in some Artemisia (Asteraceae, Anthemideae) species and genome size variation in its subgenus Dracunculus: karyological, systematic and phylogenetic implications. Chromosome Botany, 2, 45-53.
44. Pellicer J., Garcia S., Garnatje T., Hidalgo O., Korobkov A.A., Dariimaa Sh., Vallès J. (2007b) Chromosome counts in Asian Artemisia L. (Asteraceae) species: from diploids to the first report of the highest polyploid in the genus. Botanical Journal of the Linnean Society, 153, 301-310.
45. Petrov D.A. (2001) DNA loss and evolution of genome size in Drosophila. Genetica, 114, 81-91.
46. Petrov D.A. (2002) DNA loss and evolution of genome size in Drosophila. Genetica, 115, 81-91.
47. Posada D., Buckley T.R. (2004) Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests. Systematic Biology, 53, 793-808.
48. Posada D., Crandall A. (1998) Modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817-818.
49. Price H.J., Bachmann K. (1976) Mitotic cell time and DNA content in annual and perennial Microserinidae (Compositae, Cichoriaceae). Plant Systematics and Evolution, 126, 323-330.
50. Price H.J., Dillon S.L., Hodnett G., Rooney W.L., Ross L., Johnston J.S. (2005) Genome evolution in the genus Sorghum (Poaceae). Annals of Botany, 95, 219-227.
51. Sanz M., Vilatersana R., Hidalgo O., Garcia-Jacas N., Susanna A., Schneeweiss G.M., Vallès J. (2008) Molecular phylogeny and evolution of floral characters of Artemisia and allies (Anthemideae, Asteraceae): evidence from nrDNA ETS and ITS sequences. Taxon, 57, 1-13.
52. Shaked H., Kashkush K., Ozkan H., Feldman M., Levy A.A. (2001) Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat. Plant Cell, 13, 1749-1759.
53. Soltis D.E., Soltis P.S. (2000) The role of genetic and genomic attributes in the success of polyploids. Proceedings of the National Academy of Sciences of the United States of America, 97, 7051-7057.
54. Soltis D.E., Soltis P.S., Bennett M.D., Leitch I.J. (2003) Evolution of genome size in the angiosperms. American Journal of Botany, 90, 1596-1603.
55. Soltis D.E., Soltis P.S., Pires J.C., Kovarik A., Tate J.A., Mavrodiev E. (2004) Recent and recurrent polyploidy in Tragopogon (Asteraceae): cytogenetic, genomic and genetic comparisons. Biological Journal of the Linnean Society, 82, 485-501.
56. Swift H. (1950) The constancy of desoxyribose nucleic acid in plant nuclei. Proceedings of the National Academy of Sciences of the United States of America, 36, 643-654.
57. Tkach V.N., Hoffmann M.H., Röser M., Korobkov A.A., Von Hagen K.B. (2008) Parallel evolutionary patterns in multiple lineages of arctic Artemisia L. (Asteraceae). Evolution, 62, 184-198.
58. Torrell M., Vallès J. (2001) Genome size in 21 Artemisia L. species (Asteraceae, Anthemideae): Systematic, evolutionary and ecological implications. Genome, 44, 231-238.
59. Torrell M., Garcia-Jacas N., Susanna A., Vallès J. (1999) Infrageneric phylogeny of the genus Artemisia L. (Asteraceae, Anthemideae) based on nucleotide sequences of nuclear ribosomal DNA internal transcribed spacers (ITS). Taxon, 48, 721-736.
60. Torrell M., Cerbah M., Siljak-Yakovlev S., Vallès J. (2003) Molecular cytogenetics of the genus Artemisia (Asteraceae, Anthemideae): fluorochrome banding and fluorescence in situ hybridization. I. Subgenus Seriphidium and related taxa. Plant Systematics and Evolution, 239, 141-153.
61. Vallès J., Garnatje T. (2005) Artemisia and its allies: genome organization and evolution and their biosystematic, taxonomic, and phylogenetic implications in the Artemisiinae and related subtribes (Asteraceae, Anthemideae). In: Sharma A.K., Sharma A. (Eds), Plant genome: biodiversity and evolution 1(B). Science Publishers Inc, Enfield, USA: pp. 255-285.
62. Vallès J., Torrell M., Garcia-Jacas N., Kapustina L.A. (2001) New or rare chromosome counts in the genera Artemisia L., and Mausolea Bunge (Asteraceae, Anthemideae) from Uzbekistan. Botanical Journal of the Linnean Society, 135, 391-400.
63. Vallès J., Torrell M., Garnatje T., Garcia-Jacas N., Vilatersana R., Susanna A. (2003) The genus Artemisia and its allies: phylogeny of the subtribe Artemisiinae (Asteraceae, Anthemideae) based on nucleotide sequences of nuclear ribosomal DNA internal transcribed spacers (ITS). Plant Biology, 5, 274-284.
64. Venables W.N., Ripley B.D. (2003) Modern applied statistics with S. Springer-Verlag, New York, USA: pp. 495.
65. Vinogradov A.E. (2003) Selfish DNA is maladaptive: evidence from the plant Red List. Trends in Genetics, 19, 609-614.
66. Vision T.J., Brown D.G., Tanksley S.D. (2000) The origins of genomic duplications in Arabidopsis. Science, 290, 2114-2117.
67. Watson L.E., Bates P.L., Evans T.M., Unwin M.M., Estes J.R. (2002) Molecular phylogeny of subtribe Artemisiinae (Asteraceae), including Artemisia and its allied and segregate genera. BMC Evolutionary Biology, 2, 17.
68. Wendel J.F. (2000) Genome evolution in polyploids. Plant Molecular Biology, 42, 225-249.
69. White T.J., Bruns T., Lee S., Taylor J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M., Gelfand D., Sninsky J., White T. (Eds), PCR protocols: a guide to methods and applications. Academic Press, New York, USA: pp. 315-322.