메뉴 건너뛰기




Volumn 39, Issue , 2012, Pages 1-5

Revealing weak differential gene expressions and their reproducible functions associated with breast cancer metastasis

Author keywords

Breast cancer metastasis; Clustering; Reproducible functions; Systems disease; Weak differential gene expression

Indexed keywords

BIOLOGICAL PROCESS; BREAST CANCER; CANCER METASTASIS; CELL CYCLE; CELL DIVISIONS; CHROMOSOME SEGREGATION; CLUSTERING; CLUSTERING APPROACH; DATA SETS; DIFFERENTIAL EXPRESSIONS; DIFFERENTIAL GENE EXPRESSIONS; DISEASE STATE; FALSE DISCOVERY RATE; GENE LISTS; LOW POWER; MICROARRAY DATA;

EID: 84861416429     PISSN: 14769271     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.compbiolchem.2012.04.002     Document Type: Article
Times cited : (9)

References (46)
  • 3
    • 35348819954 scopus 로고    scopus 로고
    • Protein subnetwork markers improve prediction of cancer outcome
    • C. Auffray Protein subnetwork markers improve prediction of cancer outcome Molecular Systems Biology 3 2007 141
    • (2007) Molecular Systems Biology , vol.3 , pp. 141
    • Auffray, C.1
  • 4
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Y. Benjamini, and Y. Hochberg Controlling the false discovery rate: a practical and powerful approach to multiple testing Journal of the Royal Statistical Society: Series B 57 1995 289 300
    • (1995) Journal of the Royal Statistical Society: Series B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 5
    • 0035733108 scopus 로고    scopus 로고
    • The control of the false discovery rate in multiple testing under dependency
    • DOI 10.1214/aos/1013699998
    • Y. Benjamini, and D. Yekutieli The control of the false discovery rate in multiple testing under dependency Annals of Statistics 29 2001 1165 1188 (Pubitemid 33575263)
    • (2001) Annals of Statistics , vol.29 , Issue.4 , pp. 1165-1188
    • Benjamini, Y.1    Yekutieli, D.2
  • 7
    • 70350451926 scopus 로고    scopus 로고
    • A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests
    • A. Carvajal-Rodriguez, J. de Una-Alvarez, and E. Rolan-Alvarez A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests BMC Bioinformatics 10 2009 209
    • (2009) BMC Bioinformatics , vol.10 , pp. 209
    • Carvajal-Rodriguez, A.1    De Una-Alvarez, J.2    Rolan-Alvarez, E.3
  • 11
    • 33646594731 scopus 로고    scopus 로고
    • Identification of genes differentially expressed in glioblastoma versus pilocytic astrocytoma using suppression subtractive hybridization
    • C. Colin, N. Baeza, C. Bartoli, F. Fina, N. Eudes, I. Nanni, P.M. Martin, L. Ouafik, and D. Figarella-Branger Identification of genes differentially expressed in glioblastoma versus pilocytic astrocytoma using suppression subtractive hybridization Oncogene 25 2006 2818 2826
    • (2006) Oncogene , vol.25 , pp. 2818-2826
    • Colin, C.1    Baeza, N.2    Bartoli, C.3    Fina, F.4    Eudes, N.5    Nanni, I.6    Martin, P.M.7    Ouafik, L.8    Figarella-Branger, D.9
  • 12
    • 0029851451 scopus 로고    scopus 로고
    • Time distribution of the recurrence risk for breast cancer patients undergoing mastectomy: Further support about the concept of tumor dormancy
    • DOI 10.1007/BF01807163
    • R. Demicheli, A. Abbattista, R. Miceli, P. Valagussa, and G. Bonadonna Time distribution of the recurrence risk for breast cancer patients undergoing mastectomy: further support about the concept of tumor dormancy Breast Cancer Research and Treatment 41 1996 177 185 (Pubitemid 26360147)
    • (1996) Breast Cancer Research and Treatment , vol.41 , Issue.2 , pp. 177-185
    • Demicheli, R.1    Abbattista, A.2    Miceli, R.3    Valagussa, P.4    Bonadonna, G.5
  • 14
    • 34248594553 scopus 로고    scopus 로고
    • Metastasis: Recent discoveries and novel treatment strategies
    • DOI 10.1016/S0140-6736(07)60781-8, PII S0140673607607818
    • S.A. Eccles, and D.R. Welch Metastasis: recent discoveries and novel treatment strategies Lancet 369 2007 1742 1757 (Pubitemid 46755391)
    • (2007) Lancet , vol.369 , Issue.9574 , pp. 1742-1757
    • Eccles, S.A.1    Welch, D.R.2
  • 15
    • 13444282534 scopus 로고    scopus 로고
    • Outcome signature genes in breast cancer: Is there a unique set?
    • DOI 10.1093/bioinformatics/bth469
    • L. Ein-Dor, I. Kela, G. Getz, D. Givol, and E. Domany Outcome signature genes in breast cancer: is there a unique set? Bioinformatics 21 2005 171 178 (Pubitemid 40202018)
    • (2005) Bioinformatics , vol.21 , Issue.2 , pp. 171-178
    • Ein-Dor, L.1    Kela, I.2    Getz, G.3    Givol, D.4    Domany, E.5
  • 16
    • 34047118042 scopus 로고    scopus 로고
    • Overlapping probabilities of top ranking gene lists, hypergeometric distribution, and stringency of gene selection criterion
    • DOI 10.1109/IEMBS.2006.260828, 4030165, 28th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'06
    • W. Fury, F. Batliwalla, P.K. Gregersen, and W. Li Overlapping probabilities of top ranking gene lists, hypergeometric distribution, and stringency of gene selection criterion Conference of Proceedings of the IEEE Engineering in Medicine and Biology Society 1 2006 5531 5534 (Pubitemid 46521169)
    • (2006) Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings , pp. 5531-5534
    • Fury, W.1    Batliwalla, F.2    Gregersen, P.K.3    Li, W.4
  • 20
    • 38049000719 scopus 로고    scopus 로고
    • The multiplicity problem in linkage analysis of gene expression data - The power of differentiating cis- and trans-acting regulators
    • B. Huang, J. Rangrej, A.D. Paterson, and L. Sun The multiplicity problem in linkage analysis of gene expression data - the power of differentiating cis- and trans-acting regulators BMC Proceedings 1 Suppl. 1 2007 S142
    • (2007) BMC Proceedings , vol.1 , Issue.SUPPL. 1 , pp. 142
    • Huang, B.1    Rangrej, J.2    Paterson, A.D.3    Sun, L.4
  • 21
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
    • W. Huang da, B.T. Sherman, and R.A. Lempicki Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists Nucleic Acids Research 37 2009 1 13
    • (2009) Nucleic Acids Research , vol.37 , pp. 1-13
    • Huang Da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 22
    • 0033954150 scopus 로고    scopus 로고
    • Atlas of Genetics and Cytogenetics in Oncology and Haematology, an interactive database
    • J.L. Huret, S.L. Minor, F. Dorkeld, P. Dessen, and A. Bernheim Atlas of genetics and cytogenetics in oncology and haematology, an interactive database Nucleic Acids Research 28 2000 349 351 (Pubitemid 30047804)
    • (2000) Nucleic Acids Research , vol.28 , Issue.1 , pp. 349-351
    • Huret, J.-L.1    Le Minor, S.2    Dorkeld, F.3    Dessen, P.4    Bernheim, A.5
  • 23
    • 70350233470 scopus 로고    scopus 로고
    • Metastamir: The field of metastasis-regulatory microRNA is spreading
    • D.R. Hurst, M.D. Edmonds, and D.R. Welch Metastamir: the field of metastasis-regulatory microRNA is spreading Cancer Research 69 2009 7495 7498
    • (2009) Cancer Research , vol.69 , pp. 7495-7498
    • Hurst, D.R.1    Edmonds, M.D.2    Welch, D.R.3
  • 25
    • 33747344944 scopus 로고    scopus 로고
    • Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data
    • I.B. Jeffery, D.G. Higgins, and A.C. Culhane Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data BMC Bioinformatics 7 2006 359
    • (2006) BMC Bioinformatics , vol.7 , pp. 359
    • Jeffery, I.B.1    Higgins, D.G.2    Culhane, A.C.3
  • 28
    • 0001457509 scopus 로고
    • Some methods for classification and analysis of multivariate observations
    • University of California Press, Statistical Laboratory of the University of California, Berkeley
    • J. MacQueen Some methods for classification and analysis of multivariate observations Fifth Berkeley Symposium on Mathematical Statistics and Probability University of California Press, Statistical Laboratory of the University of California, Berkeley 1967 281 297
    • (1967) Fifth Berkeley Symposium on Mathematical Statistics and Probability , pp. 281-297
    • MacQueen, J.1
  • 29
    • 62549109118 scopus 로고    scopus 로고
    • Testing significance relative to a fold-change threshold is a TREAT
    • D.J. McCarthy, and G.K. Smyth Testing significance relative to a fold-change threshold is a TREAT Bioinformatics 25 2009 765 771
    • (2009) Bioinformatics , vol.25 , pp. 765-771
    • McCarthy, D.J.1    Smyth, G.K.2
  • 35
    • 63049117518 scopus 로고    scopus 로고
    • Learning therapeutic lessons from metastasis suppressor proteins
    • S.C. Smith, and D. Theodorescu Learning therapeutic lessons from metastasis suppressor proteins Nature Reviews Cancer 9 2009 253 264
    • (2009) Nature Reviews Cancer , vol.9 , pp. 253-264
    • Smith, S.C.1    Theodorescu, D.2
  • 37
    • 33747595466 scopus 로고    scopus 로고
    • Stratified false discovery control for large-scale hypothesis testing with application to genome-wide association studies
    • DOI 10.1002/gepi.20164
    • L. Sun, R.V. Craiu, A.D. Paterson, and S.B. Bull Stratified false discovery control for large-scale hypothesis testing with application to genome-wide association studies Genetic Epidemiology 30 2006 519 530 (Pubitemid 44267168)
    • (2006) Genetic Epidemiology , vol.30 , Issue.6 , pp. 519-530
    • Sun, L.1    Craiu, R.V.2    Paterson, A.D.3    Bull, S.B.4
  • 39
  • 41
    • 38349188469 scopus 로고    scopus 로고
    • Gaining confidence in biological interpretation of the microarray data: The functional consistence of the significant GO categories
    • D. Yang, Y. Li, H. Xiao, Q. Liu, M. Zhang, J. Zhu, W. Ma, C. Yao, J. Wang, D. Wang, Z. Guo, and B. Yang Gaining confidence in biological interpretation of the microarray data: the functional consistence of the significant GO categories Bioinformatics 24 2008 265 271
    • (2008) Bioinformatics , vol.24 , pp. 265-271
    • Yang, D.1    Li, Y.2    Xiao, H.3    Liu, Q.4    Zhang, M.5    Zhu, J.6    Ma, W.7    Yao, C.8    Wang, J.9    Wang, D.10    Guo, Z.11    Yang, B.12
  • 42
    • 78651307694 scopus 로고    scopus 로고
    • StarBase: A database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data
    • J.H. Yang, J.H. Li, P. Shao, H. Zhou, Y.Q. Chen, and L.H. Qu starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data Nucleic Acids Research 39 2011 D202 D209
    • (2011) Nucleic Acids Research , vol.39
    • Yang, J.H.1    Li, J.H.2    Shao, P.3    Zhou, H.4    Chen, Y.Q.5    Qu, L.H.6
  • 43
    • 78049507670 scopus 로고    scopus 로고
    • Multi-level reproducibility of signature hubs in human interactome for breast cancer metastasis
    • C. Yao, H. Li, C. Zhou, L. Zhang, J. Zou, and Z. Guo Multi-level reproducibility of signature hubs in human interactome for breast cancer metastasis BMC Systems Biology 4 2010 151
    • (2010) BMC Systems Biology , vol.4 , pp. 151
    • Yao, C.1    Li, H.2    Zhou, C.3    Zhang, L.4    Zou, J.5    Guo, Z.6
  • 45
    • 67649205714 scopus 로고    scopus 로고
    • Evaluating reproducibility of differential expression discoveries in microarray studies by considering correlated molecular changes
    • M. Zhang, L. Zhang, J. Zou, C. Yao, H. Xiao, Q. Liu, J. Wang, D. Wang, C. Wang, and Z. Guo Evaluating reproducibility of differential expression discoveries in microarray studies by considering correlated molecular changes Bioinformatics 2009
    • (2009) Bioinformatics
    • Zhang, M.1    Zhang, L.2    Zou, J.3    Yao, C.4    Xiao, H.5    Liu, Q.6    Wang, J.7    Wang, D.8    Wang, C.9    Guo, Z.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.