-
1
-
-
0030979555
-
Circular permutations of natural protein sequences: Structural evidence
-
DOI 10.1016/S0959-440X(97)80061-9
-
Lindqvist, Y. and Schneider, G. (1997) Circular permutations of natural protein sequences: structural evidence. Curr. Opin. Struct. Biol., 7, 422-427. (Pubitemid 27281414)
-
(1997)
Current Opinion in Structural Biology
, vol.7
, Issue.3
, pp. 422-427
-
-
Lindqvist, Y.1
Schneider, G.2
-
2
-
-
77951248793
-
Circular permuted proteins in the universe of protein folds
-
Schmidt-Goenner, T., Guerler, A., Kolbeck, B. and Knapp, E.W. (2010) Circular permuted proteins in the universe of protein folds. Proteins, 78, 1618-1630.
-
(2010)
Proteins
, vol.78
, pp. 1618-1630
-
-
Schmidt-Goenner, T.1
Guerler, A.2
Kolbeck, B.3
Knapp, E.W.4
-
3
-
-
0024490818
-
Correct folding of circularly permuted variants of a βα barrel enzyme in vivo
-
Luger, K., Hommel, U., Herold, M., Hofsteenge, J. and Kirschner, K. (1989) Correct folding of circularly permuted variants of a beta alpha barrel enzyme in vivo. Science, 243, 206-210. (Pubitemid 19035354)
-
(1989)
Science
, vol.243
, Issue.4888
, pp. 206-210
-
-
Luger, K.1
Hommel, U.2
Herold, M.3
Hofsteenge, J.4
Kirschner, K.5
-
4
-
-
0027444611
-
Circular permutation of T4 lysozyme
-
DOI 10.1021/bi00097a006
-
Zhang, T., Bertelsen, E., Benvegnu, D. and Alber, T. (1993) Circular permutation of T4 lysozyme. Biochemistry, 32, 12311-12318. (Pubitemid 23357949)
-
(1993)
Biochemistry
, vol.32
, Issue.46
, pp. 12311-12318
-
-
Zhang, T.1
Bertelsen, E.2
Benvegnu, D.3
Alber, T.4
-
6
-
-
0029786618
-
Circularly permuted dihydrofolate reductase possesses all the properties of the molten globule state, but can resume functional tertiary structure by interaction with its ligands
-
Uversky, V.N., Kutyshenko, V.P., Protasova, N., Rogov, V.V., Vassilenko, K.S. and Gudkov, A.T. (1996) Circularly permuted dihydrofolate reductase possesses all the properties of the molten globule state, but can resume functional tertiary structure by interaction with its ligands. Protein Sci., 5, 1844-1851. (Pubitemid 26303488)
-
(1996)
Protein Science
, vol.5
, Issue.9
, pp. 1844-1851
-
-
Uversky, V.N.1
Kutyshenko, V.P.2
Protasova, N.Yu.3
Rogov, V.V.4
Vassilenko, K.S.5
Gudkov, A.T.6
-
7
-
-
0030840018
-
Circularly permuted β-lactamase from Staphylococcus aureus PC1
-
DOI 10.1021/bi9705117
-
Pieper, U., Hayakawa, K., Li, Z. and Herzberg, O. (1997) Circularly permuted beta-lactamase from Staphylococcus aureus PC1. Biochemistry, 36, 8767-8774. (Pubitemid 27342522)
-
(1997)
Biochemistry
, vol.36
, Issue.29
, pp. 8767-8774
-
-
Pieper, U.1
Hayakawa, K.2
Li, Z.3
Herzberg, O.4
-
8
-
-
0028932770
-
The order of secondary structure elements does not determine the structure of a protein but does affect its folding kinetics
-
Viguera, A.R., Blanco, F.J. and Serrano, L. (1995) The order of secondary structure elements does not determine the structure of a protein but does affect its folding kinetics. J. Mol. Biol., 247, 670-681.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 670-681
-
-
Viguera, A.R.1
Blanco, F.J.2
Serrano, L.3
-
9
-
-
1942505822
-
Alteration of the disulfide-coupled folding pathway of BPTI by circular permutation
-
DOI 10.1110/ps.03563704
-
Bulaj, G., Koehn, R.E. and Goldenberg, D.P. (2004) Alteration of the disulfide-coupled folding pathway of BPTI by circular permutation. Protein Sci., 13, 1182-1196. (Pubitemid 38526083)
-
(2004)
Protein Science
, vol.13
, Issue.5
, pp. 1182-1196
-
-
Bulaj, G.1
Koehn, R.E.2
Goldenberg, D.P.3
-
10
-
-
78650413957
-
Circular permutation: A different way to engineer enzyme structure and function
-
Yu, Y. and Lutz, S. (2011) Circular permutation: a different way to engineer enzyme structure and function. Trends Biotechnol., 29, 18-25.
-
(2011)
Trends Biotechnol.
, vol.29
, pp. 18-25
-
-
Yu, Y.1
Lutz, S.2
-
11
-
-
25844525807
-
Improving the catalytic activity of Candida antarctica lipase B by circular permutation
-
DOI 10.1021/ja053932h
-
Qian, Z. and Lutz, S. (2005) Improving the catalytic activity of Candida antarctica lipase B by circular permutation. J. Am. Chem. Soc., 127, 13466-13467. (Pubitemid 41401178)
-
(2005)
Journal of the American Chemical Society
, vol.127
, Issue.39
, pp. 13466-13467
-
-
Qian, Z.1
Lutz, S.2
-
12
-
-
77955100340
-
Circularly permuted monomeric red fluorescent proteins with new termini in the beta-sheet
-
Carlson, H.J., Cotton, D.W. and Campbell, R.E. (2010) Circularly permuted monomeric red fluorescent proteins with new termini in the beta-sheet. Protein Sci., 19, 1490-1499.
-
(2010)
Protein Sci.
, vol.19
, pp. 1490-1499
-
-
Carlson, H.J.1
Cotton, D.W.2
Campbell, R.E.3
-
13
-
-
78149378424
-
Tying up the loose ends: Circular permutation decreases the proteolytic susceptibility of recombinant proteins
-
Whitehead, T.A., Bergeron, L.M. and Clark, D.S. (2009) Tying up the loose ends: circular permutation decreases the proteolytic susceptibility of recombinant proteins. Protein Eng. Des. Sel., 22, 607-613.
-
(2009)
Protein Eng. Des. Sel.
, vol.22
, pp. 607-613
-
-
Whitehead, T.A.1
Bergeron, L.M.2
Clark, D.S.3
-
14
-
-
4644349676
-
Circular permutation as a tool to reduce surface entropy triggers crystallization of the signal recognition particle receptor β subunit
-
DOI 10.1110/ps.04917504
-
Schwartz, T.U., Walczak, R. and Blobel, G. (2004) Circular permutation as a tool to reduce surface entropy triggers crystallization of the signal recognition particle receptor beta subunit. Protein Sci., 13, 2814-2818. (Pubitemid 39274649)
-
(2004)
Protein Science
, vol.13
, Issue.10
, pp. 2814-2818
-
-
Schwartz, T.U.1
Walczak, R.2
Blobel, G.3
-
15
-
-
77952473769
-
Strategies for protein synthetic biology
-
Grünberg, R. and Serrano, L. (2010) Strategies for protein synthetic biology. Nucleic Acids Res., 38, 2663-2675.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 2663-2675
-
-
Grünberg, R.1
Serrano, L.2
-
16
-
-
23844465160
-
Directed evolution of protein switches and their application to the creation of ligand-binding proteins
-
DOI 10.1073/pnas.0502673102
-
Guntas, G., Mansell, T.J., Kim, J.R. and Ostermeier, M. (2005) Directed evolution of protein switches and their application to the creation of ligand-binding proteins. Proc. Natl Acad. Sci. USA, 102, 11224-11229. (Pubitemid 41153802)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.32
, pp. 11224-11229
-
-
Guntas, G.1
Mansell, T.J.2
Kim, J.R.3
Ostermeier, M.4
-
17
-
-
0029859408
-
Random circular permutation of genes and expressed polypeptide chains: Application of the method to the catalytic chains of aspartate transcarbamoylase
-
DOI 10.1073/pnas.93.21.11591
-
Graf, R. and Schachman, H.K. (1996) Random circular permutation of genes and expressed polypeptide chains: application of the method to the catalytic chains of aspartate transcarbamoylase. Proc. Natl Acad. Sci. USA, 93, 11591-11596. (Pubitemid 26347166)
-
(1996)
Proceedings of the National Academy of Sciences of the United States of America
, vol.93
, Issue.21
, pp. 11591-11596
-
-
Graf, R.1
Schachman, H.K.2
-
18
-
-
0033525640
-
Random circular permutation of DsbA reveals segments that are essential for protein folding and stability
-
DOI 10.1006/jmbi.1998.2531
-
Hennecke, J., Sebbel, P. and Glockshuber, R. (1999) Random circular permutation of DsbA reveals segments that are essential for protein folding and stability. J. Mol. Biol., 286, 1197-1215. (Pubitemid 29116685)
-
(1999)
Journal of Molecular Biology
, vol.286
, Issue.4
, pp. 1197-1215
-
-
Hennecke, J.1
Sebbel, P.2
Glockshuber, R.3
-
19
-
-
0004136246
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, USA
-
Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, USA.
-
(1989)
Molecular Cloning: A Laboratory Manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
20
-
-
0346500466
-
Creation of an Allosteric Enzyme by Domain Insertion
-
DOI 10.1016/j.jmb.2003.12.016
-
Guntas, G. and Ostermeier, M. (2004) Creation of an allosteric enzyme by domain insertion. J. Mol. Biol., 336, 263-273. (Pubitemid 38102347)
-
(2004)
Journal of Molecular Biology
, vol.336
, Issue.1
, pp. 263-273
-
-
Guntas, G.1
Ostermeier, M.2
-
21
-
-
77950392767
-
Sites in the AAV5 capsid tolerant to deletions and tandem duplications
-
Hida, K., Won, S.Y., Di Pasquale, G., Hanes, J., Chiorini, J.A. and Ostermeier, M. (2010) Sites in the AAV5 capsid tolerant to deletions and tandem duplications. Arch. Biochem. Biophys., 496, 1-8.
-
(2010)
Arch. Biochem. Biophys.
, vol.496
, pp. 1-8
-
-
Hida, K.1
Won, S.Y.2
Di Pasquale, G.3
Hanes, J.4
Chiorini, J.A.5
Ostermeier, M.6
-
22
-
-
0033168458
-
An efficient and accurate integration of mini-Mu transposons in vitro: A general methodology for functional genetic analysis and molecular biology applications
-
DOI 10.1093/nar/27.13.2777
-
Haapa, S., Taira, S., Heikkinen, E. and Savilahti, H. (1999) An efficient and accurate integration of mini-Mu transposons in vitro: a general methodology for functional genetic analysis and molecular biology applications. Nucleic Acids Res., 27, 2777-2784. (Pubitemid 29306577)
-
(1999)
Nucleic Acids Research
, vol.27
, Issue.13
, pp. 2777-2784
-
-
Haapa, S.1
Taira, S.2
Heikkinen, E.3
Savilahti, H.4
-
23
-
-
1542346468
-
Probing the α-Complementing Domain of E. coli β-Galactosidase with Use of an Insertional Pentapeptide Mutagenesis Strategy Based on Mu in Vitro DNA Transposition
-
DOI 10.1002/prot.10467
-
Poussu, E., Vihinen, M., Paulin, L. and Savilahti, H. (2004) Probing the alpha-complementing domain of E. coli beta-galactosidase with use of an insertional pentapeptide mutagenesis strategy based on Mu in vitro DNA transposition. Proteins, 54, 681-692. (Pubitemid 38298787)
-
(2004)
Proteins: Structure, Function and Genetics
, vol.54
, Issue.4
, pp. 681-692
-
-
Poussu, E.1
Vihinen, M.2
Paulin, L.3
Savilahti, H.4
-
24
-
-
27244448322
-
Triplet nucleotide removal at random positions in a target gene: The tolerance of TEM-1 beta-lactamase to an amino acid deletion
-
Jones, D.D. (2005) Triplet nucleotide removal at random positions in a target gene: the tolerance of TEM-1 beta-lactamase to an amino acid deletion. Nucleic Acids Res., 33, e80.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Jones, D.D.1
-
25
-
-
26444591575
-
A gene truncation strategy generating N-and C-terminal deletion variants of proteins for functional studies: Mapping of the Sec1p binding domain in yeast Mso1p by a Mu in vitro transposition-based approach
-
Poussu, E., Jantti, J. and Savilahti, H. (2005) A gene truncation strategy generating N-and C-terminal deletion variants of proteins for functional studies: mapping of the Sec1p binding domain in yeast Mso1p by a Mu in vitro transposition-based approach. Nucleic Acids Res., 33, e104.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Poussu, E.1
Jantti, J.2
Savilahti, H.3
-
26
-
-
50549084510
-
Random tag insertions by transposon integration mediated mutagenesis (TIM)
-
Hoeller, B.M., Reiter, B., Abad, S., Graze, I. and Glieder, A. (2008) Random tag insertions by transposon integration mediated mutagenesis (TIM). J. Microbiol. Methods, 75, 251-257.
-
(2008)
J. Microbiol. Methods
, vol.75
, pp. 251-257
-
-
Hoeller, B.M.1
Reiter, B.2
Abad, S.3
Graze, I.4
Glieder, A.5
-
27
-
-
48349098862
-
Expanded molecular diversity generation during directed evolution by trinucleotide exchange (TriNEx)
-
Baldwin, A.J., Busse, K., Simm, A.M. and Jones, D.D. (2008) Expanded molecular diversity generation during directed evolution by trinucleotide exchange (TriNEx). Nucleic Acids Res., 36, e77.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Baldwin, A.J.1
Busse, K.2
Simm, A.M.3
Jones, D.D.4
-
28
-
-
65249187275
-
A general method for scanning unnatural amino acid mutagenesis
-
Daggett, K.A., Layer, M. and Cropp, T.A. (2009) A general method for scanning unnatural amino acid mutagenesis. ACS Chem. Biol., 4, 109-113.
-
(2009)
ACS Chem. Biol.
, vol.4
, pp. 109-113
-
-
Daggett, K.A.1
Layer, M.2
Cropp, T.A.3
-
29
-
-
48349086462
-
Linking the functions of unrelated proteins using a novel directed evolution domain insertion method
-
Edwards, W.R., Busse, K., Allemann, R.K. and Jones, D.D. (2008) Linking the functions of unrelated proteins using a novel directed evolution domain insertion method. Nucleic Acids Res., 36, e78.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Edwards, W.R.1
Busse, K.2
Allemann, R.K.3
Jones, D.D.4
-
30
-
-
79151475523
-
Mesophilic and hyperthermophilic adenylate kinases differ in their tolerance to random fragmentation
-
Segall-Shapiro, T.H., Nguyen, P.Q., Dos Santos, E.D., Subedi, S., Judd, J., Suh, J. and Silberg, J.J. (2011) Mesophilic and hyperthermophilic adenylate kinases differ in their tolerance to random fragmentation. J. Mol. Biol., 406, 135-148.
-
(2011)
J. Mol. Biol.
, vol.406
, pp. 135-148
-
-
Segall-Shapiro, T.H.1
Nguyen, P.Q.2
Dos Santos, E.D.3
Subedi, S.4
Judd, J.5
Suh, J.6
Silberg, J.J.7
-
31
-
-
0024340629
-
Adenylate kinases from thermosensitive Escherichia coli strains
-
DOI 10.1016/0022-2836(89)90446-4
-
Haase, G.H., Brune, M., Reinstein, J., Pai, E.F., Pingoud, A. and Wittinghofer, A. (1989) Adenylate kinases from thermosensitive Escherichia coli strains. J. Mol. Biol., 207, 151-162. (Pubitemid 19141247)
-
(1989)
Journal of Molecular Biology
, vol.207
, Issue.1
, pp. 151-162
-
-
Haase, G.H.W.1
Brune, M.2
Reinstein, J.3
Pai, E.F.4
Pingoud, A.5
Wittinghofer, A.6
-
32
-
-
0030796260
-
Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli: Application to open reading frame characterization
-
Link, A.J., Phillips, D. and Church, G.M. (1997) Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli: application to open reading frame characterization. J. Bacteriol., 179, 6228-6237. (Pubitemid 27443901)
-
(1997)
Journal of Bacteriology
, vol.179
, Issue.20
, pp. 6228-6237
-
-
Link, A.J.1
Phillips, D.2
Church, G.M.3
-
33
-
-
0038000447
-
Thermotoga neapolitana adenylate kinase is highly active at 30°c
-
DOI 10.1042/BJ20021377
-
Vieille, C., Krishnamurthy, H., Hyun, H.H., Savchenko, A., Yan, H. and Zeikus, J.G. (2003) Thermotoga neapolitana adenylate kinase is highly active at 30 degrees C. Biochem. J., 372, 577-585. (Pubitemid 36723903)
-
(2003)
Biochemical Journal
, vol.372
, Issue.2
, pp. 577-585
-
-
Vieille, C.1
Krishnamurthy, H.2
Hyun, H.-H.3
Savchenko, A.4
Yan, H.5
Zeikus, J.G.6
-
34
-
-
35148901037
-
Cost minimization of ribosomal frameshifts
-
DOI 10.1016/j.jtbi.2007.07.007, PII S0022519307003347
-
Seligmann, H. (2007) Cost minimization of ribosomal frameshifts. J. Theor. Biol., 249, 162-167. (Pubitemid 47539499)
-
(2007)
Journal of Theoretical Biology
, vol.249
, Issue.1
, pp. 162-167
-
-
Seligmann, H.1
-
35
-
-
48849091618
-
Thermostability promotes the cooperative function of split adenylate kinases. Protein Eng
-
Nguyen, P.Q., Liu, S., Thompson, J.C. and Silberg, J.J. (2008) Thermostability promotes the cooperative function of split adenylate kinases. Protein Eng. Des. Sel., 21, 303-310.
-
(2008)
Des. Sel.
, vol.21
, pp. 303-310
-
-
Nguyen, P.Q.1
Liu, S.2
Thompson, J.C.3
Silberg, J.J.4
-
36
-
-
3142653228
-
Structures and analysis of highly homologous psychrophilic, mesophilic, and thermophilic adenylate kinases
-
DOI 10.1074/jbc.M401865200
-
Bae, E. and Phillips, G.N. Jr (2004) Structures and analysis of highly homologous psychrophilic, mesophilic, and thermophilic adenylate kinases. J. Biol. Chem., 279, 28202-28208. (Pubitemid 38900096)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.27
, pp. 28202-28208
-
-
Bae, E.1
Phillips Jr., G.N.2
-
37
-
-
17044403057
-
Type II restriction endonucleases: Structure and mechanism
-
Pingoud, A., Fuxreiter, M., Pingoud, V. and Wende, W. (2005) Type II restriction endonucleases: structure and mechanism. Cell Mol. Life Sci., 62, 685-707.
-
(2005)
Cell Mol. Life Sci.
, vol.62
, pp. 685-707
-
-
Pingoud, A.1
Fuxreiter, M.2
Pingoud, V.3
Wende, W.4
-
38
-
-
70450242805
-
Exploring protein fitness landscapes by directed evolution
-
Romero, P.A. and Arnold, F.H. (2009) Exploring protein fitness landscapes by directed evolution. Nat. Rev. Mol. Cell Biol., 10, 866-876.
-
(2009)
Nat. Rev. Mol. Cell Biol.
, vol.10
, pp. 866-876
-
-
Romero, P.A.1
Arnold, F.H.2
-
39
-
-
14144251690
-
Thermodynamic prediction of protein neutrality
-
DOI 10.1073/pnas.0406744102
-
Bloom, J.D., Silberg, J.J., Wilke, C.O., Drummond, D.A., Adami, C. and Arnold, F.H. (2005) Thermodynamic prediction of protein neutrality. Proc. Natl Acad. Sci USA, 102, 606-611. (Pubitemid 40282712)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.3
, pp. 606-611
-
-
Bloom, J.D.1
Silberg, J.J.2
Wilke, C.O.3
Drummond, D.A.4
Adami, C.5
Arnold, F.H.6
-
40
-
-
23944444109
-
Engineering allosteric protein switches by domain insertion
-
DOI 10.1093/protein/gzi048
-
Ostermeier, M. (2005) Engineering allosteric protein switches by domain insertion. Protein Eng. Des. Sel., 18, 359-364. (Pubitemid 41187251)
-
(2005)
Protein Engineering, Design and Selection
, vol.18
, Issue.8
, pp. 359-364
-
-
Ostermeier, M.1
|