메뉴 건너뛰기




Volumn 33, Issue 12, 2005, Pages 1-8

A gene truncation strategy generating N- and C-terminal deletion variants of proteins for functional studies: Mapping of the Sec1p binding domain in yeast Mso1p by a Mu in vitro transposition-based approach

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; FUNGAL DNA; MSO1 PROTEIN; SACCHAROMYCES CEREVISIAE PROTEIN; SEC1 PROTEIN; UNCLASSIFIED DRUG; MEMBRANE PROTEIN; MSO1 PROTEIN, S CEREVISIAE; MUNC18 PROTEIN; NERVE PROTEIN; VESICULAR TRANSPORT PROTEIN;

EID: 26444591575     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gni102     Document Type: Article
Times cited : (24)

References (39)
  • 1
    • 0025889034 scopus 로고
    • In vivo genetic engineering with bacteriophage Mu
    • Groisman,E.A. (1991) In vivo genetic engineering with bacteriophage Mu. Methods Enzymol., 204, 180-212.
    • (1991) Methods Enzymol. , vol.204 , pp. 180-212
    • Groisman, E.A.1
  • 2
    • 0002003278 scopus 로고
    • Transposable elements as tools for molecular analyses in bacteria
    • Sherratt,D.J. (ed.), Oxford University Press, Oxford
    • Berg,C.M. and Berg,D.E. (1995) Transposable elements as tools for molecular analyses in bacteria. In Sherratt,D.J. (ed.), Mobile Genetic Elements. Oxford University Press, Oxford, pp. 38-68.
    • (1995) Mobile Genetic Elements , pp. 38-68
    • Berg, C.M.1    Berg, D.E.2
  • 3
    • 0002495174 scopus 로고
    • Eukaryotic transposable elements as tools to study gene structure and function
    • Sherratt,D.J. (ed.), Oxford University Press, Oxford
    • Kaiser,K., Sentry,J.W. and Finnegan,D.J. (1995) Eukaryotic transposable elements as tools to study gene structure and function. In Sherratt,D.J. (ed.), Mobile Genetic Elements. Oxford University Press, Oxford, pp. 69-100.
    • (1995) Mobile Genetic Elements , pp. 69-100
    • Kaiser, K.1    Sentry, J.W.2    Finnegan, D.J.3
  • 4
    • 85158014699 scopus 로고    scopus 로고
    • Putting mobile DNA to work: The toolbox
    • Craig,N., Craigie,R., Gellert,M. and Lambowitz,A.M. (eds), ASM Press, Washington DC
    • Boeke,J.D. (2002) Putting mobile DNA to work: The toolbox. In Craig,N., Craigie,R., Gellert,M. and Lambowitz,A.M. (eds), Mobile DNA II. ASM Press, Washington DC. pp. 24-37.
    • (2002) Mobile DNA II , pp. 24-37
    • Boeke, J.D.1
  • 5
    • 0348047326 scopus 로고    scopus 로고
    • Transposon-based strategies for microbial functional genomics and proteomics
    • Hayes,F. (2003) Transposon-based strategies for microbial functional genomics and proteomics. Annu. Rev. Genet., 37, 3-29.
    • (2003) Annu. Rev. Genet. , vol.37 , pp. 3-29
    • Hayes, F.1
  • 6
    • 0031006969 scopus 로고    scopus 로고
    • Target site selection in transposition
    • Craig,N.L. (1997) Target site selection in transposition. Annu. Rev. Biochem., 66, 437-474.
    • (1997) Annu. Rev. Biochem. , vol.66 , pp. 437-474
    • Craig, N.L.1
  • 7
    • 0021045079 scopus 로고
    • In vitro transposition of bacteriophage Mu: A biochemical approach to a novel replication reaction
    • Mizuuchi,K. (1983) In vitro transposition of bacteriophage Mu: A biochemical approach to a novel replication reaction. Cell, 35 785-794.
    • (1983) Cell , vol.35 , pp. 785-794
    • Mizuuchi, K.1
  • 8
    • 0033168458 scopus 로고    scopus 로고
    • An efficient and accurate integration of mini-Mu transposons in vitro: A general methodology for functional genetic analysis and molecular biology applications
    • Haapa,S., Taira,S., Heikkinen,E. and Savilahti,H. (1999) An efficient and accurate integration of mini-Mu transposons in vitro: A general methodology for functional genetic analysis and molecular biology applications. Nucleic Acids Res., 27, 2777-2784.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 2777-2784
    • Haapa, S.1    Taira, S.2    Heikkinen, E.3    Savilahti, H.4
  • 10
    • 0037169531 scopus 로고    scopus 로고
    • DNA transposition of bacteriophage Mu. A quantitative analysis of target site selection in vitro
    • Haapa-Paananen,S., Rita,H. and Savilahti,H. (2002) DNA transposition of bacteriophage Mu. A quantitative analysis of target site selection in vitro. J. Biol. Chem., 277, 2843-2851.
    • (2002) J. Biol. Chem. , vol.277 , pp. 2843-2851
    • Haapa-Paananen, S.1    Rita, H.2    Savilahti, H.3
  • 11
    • 0032897710 scopus 로고    scopus 로고
    • An efficient DNA sequencing strategy based on the bacteriophage Mu in vitro DNA transposition reaction
    • Haapa,S., Suomalainen,S., Eerikäinen,S., Airaksinen,M., Paulin,L. and Savilahti,H. (1999) An efficient DNA sequencing strategy based on the bacteriophage Mu in vitro DNA transposition reaction. Genome Res., 9, 308-315.
    • (1999) Genome Res. , vol.9 , pp. 308-315
    • Haapa, S.1    Suomalainen, S.2    Eerikäinen, S.3    Airaksinen, M.4    Paulin, L.5    Savilahti, H.6
  • 12
    • 0033999266 scopus 로고    scopus 로고
    • Functional characterization of the human immunodeficiency virus type 1 genome by genetic footprinting
    • Laurent,L.C., Olsen,M.N., Crowley,R.A., Savilahti,H. and Brown,P.O. (2000) Functional characterization of the human immunodeficiency virus type 1 genome by genetic footprinting. J. Virol., 74, 2760-2769.
    • (2000) J. Virol. , vol.74 , pp. 2760-2769
    • Laurent, L.C.1    Olsen, M.N.2    Crowley, R.A.3    Savilahti, H.4    Brown, P.O.5
  • 13
    • 0035120076 scopus 로고    scopus 로고
    • Construction of gene-targeting vectors: A rapid Mu in vitro DNA transposition-based strategy generating null, potentially hypomorphic, and conditional alleles
    • Vilen,H., Eerikäinen,S., Tornberg,J., Airaksinen,M.S. and Savilahti,H. (2001) Construction of gene-targeting vectors: A rapid Mu in vitro DNA transposition-based strategy generating null, potentially hypomorphic, and conditional alleles. Transgenic Res., 10, 69-80.
    • (2001) Transgenic Res. , vol.10 , pp. 69-80
    • Vilen, H.1    Eerikäinen, S.2    Tornberg, J.3    Airaksinen, M.S.4    Savilahti, H.5
  • 14
    • 0036228849 scopus 로고    scopus 로고
    • Functional genomics on potato virus A: Virus genome-wide map of sites essential for virus propagation
    • Kekarainen,T., Savilahti,H. and Valkonen,J.P. (2002) Functional genomics on potato virus A: Virus genome-wide map of sites essential for virus propagation. Genome Res., 12, 584-594.
    • (2002) Genome Res. , vol.12 , pp. 584-594
    • Kekarainen, T.1    Savilahti, H.2    Valkonen, J.P.3
  • 15
    • 0037213261 scopus 로고    scopus 로고
    • A direct transposon insertion tool for modification and functional analysis of viral genomes
    • Vilen,H., Aalto,J.M., Kassinen,A., Paulin,L. and Savilahti,H. (2003) A direct transposon insertion tool for modification and functional analysis of viral genomes. J. Virol., 77, 123-134.
    • (2003) J. Virol. , vol.77 , pp. 123-134
    • Vilen, H.1    Aalto, J.M.2    Kassinen, A.3    Paulin, L.4    Savilahti, H.5
  • 16
    • 1542346468 scopus 로고    scopus 로고
    • Probing the α-complementing domain of E.coli β-galactosidase with use of all insertional pentapeptide mutagenesis strategy based on Mu in vitro DNA transposition
    • Poussu,E., Vihinen,M., Paulin,L. and Savilahti,H. (2004) Probing the α-complementing domain of E.coli β-galactosidase with use of all insertional pentapeptide mutagenesis strategy based on Mu in vitro DNA transposition. Proteins, 54, 681-692.
    • (2004) Proteins , vol.54 , pp. 681-692
    • Poussu, E.1    Vihinen, M.2    Paulin, L.3    Savilahti, H.4
  • 17
    • 1542375199 scopus 로고    scopus 로고
    • Development of in vitro transposon assisted signal sequence trapping and its use in screening Bacillus halodurans C125 and Sulfolobus solfataricus P2 gene libraries
    • Becker,F., Schnorr,K., Wilting,R., Tolstrup,N., Bendtsen,J.D. and Olsen,P.B. (2004) Development of in vitro transposon assisted signal sequence trapping and its use in screening Bacillus halodurans C125 and Sulfolobus solfataricus P2 gene libraries. J. Microbiol. Methods, 57, 123-133.
    • (2004) J. Microbiol. Methods , vol.57 , pp. 123-133
    • Becker, F.1    Schnorr, K.2    Wilting, R.3    Tolstrup, N.4    Bendtsen, J.D.5    Olsen, P.B.6
  • 18
    • 85158020392 scopus 로고    scopus 로고
    • Transposition of phage Mu DNA
    • Craig,N.L., Craigie,R., Gellert,M. and Lambowitz,A.M. (eds), ASM Press, Washington DC
    • Chaconas,G. and Harshey,R.M. (2002) Transposition of phage Mu DNA. In Craig,N.L., Craigie,R., Gellert,M. and Lambowitz,A.M. (eds), Mobile DNA II. ASM Press, Washington DC, pp. 384-402.
    • (2002) Mobile DNA II , pp. 384-402
    • Chaconas, G.1    Harshey, R.M.2
  • 19
    • 26444467322 scopus 로고    scopus 로고
    • Generation of protein fragment libraries by incremental truncation
    • Golemis,E. (ed.), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Ostermeier,M., Lutz,S. and Benkovic,S. (2002) Generation of protein fragment libraries by incremental truncation. In Golemis,E. (ed.), Protein-Protein Interactions: A Molecular Cloning Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 507-522.
    • (2002) Protein-Protein Interactions: A Molecular Cloning Manual , pp. 507-522
    • Ostermeier, M.1    Lutz, S.2    Benkovic, S.3
  • 20
    • 0021088768 scopus 로고
    • Modular arrangement of functional domains along the sequence of an aminoacyl tRNA synthetase
    • Jasin,M., Regan,L. and Schimmel,P. (1983) Modular arrangement of functional domains along the sequence of an aminoacyl tRNA synthetase. Nature, 306, 441-447.
    • (1983) Nature , vol.306 , pp. 441-447
    • Jasin, M.1    Regan, L.2    Schimmel, P.3
  • 21
    • 0036340453 scopus 로고    scopus 로고
    • Rapid generation of nested deletions by differential restriction digestion
    • 310, 312
    • Dennis,J.J. and Zylstra,G.J. (2002) Rapid generation of nested deletions by differential restriction digestion. Biotechniques, 33, 310, 312, 314-315.
    • (2002) Biotechniques , vol.33 , pp. 314-315
    • Dennis, J.J.1    Zylstra, G.J.2
  • 22
    • 0032522135 scopus 로고    scopus 로고
    • Simple and efficient generation in vitro of nested deletions and inversions: Tn5 intramolecular transposition
    • York,D., Welch,K., Goryshin,I.Y. and Reznikoff,W.S. (1998) Simple and efficient generation in vitro of nested deletions and inversions: Tn5 intramolecular transposition. Nucleic Acids Res., 26, 1927-1933.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 1927-1933
    • York, D.1    Welch, K.2    Goryshin, I.Y.3    Reznikoff, W.S.4
  • 23
    • 0030842082 scopus 로고    scopus 로고
    • Mso1p: A yeast protein that functions in secretion and interacts physically and genetically with Sec1p
    • Aalto,M.K., Jäntti,J., Östling,J., Keränen,S. and Ronne,H. (1997) Mso1p: A yeast protein that functions in secretion and interacts physically and genetically with Sec1p. Proc. Natl Acad. Sci. USA, 94, 7331-7336.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 7331-7336
    • Aalto, M.K.1    Jäntti, J.2    Östling, J.3    Keränen, S.4    Ronne, H.5
  • 24
    • 0000756130 scopus 로고
    • Secretion and cell-surface growth are blocked in a temperature-sensitive mutant of Saccharomyces cerevisiae
    • Novick,P. and Schekman,R. (1979) Secretion and cell-surface growth are blocked in a temperature-sensitive mutant of Saccharomyces cerevisiae. Proc. Natl Acad. Sci. USA, 76, 1858-1862.
    • (1979) Proc. Natl. Acad. Sci. USA , vol.76 , pp. 1858-1862
    • Novick, P.1    Schekman, R.2
  • 25
    • 0019424489 scopus 로고
    • Order of events in the yeast secretory pathway
    • Novick,P., Ferro,S. and Schekman,R. (1981) Order of events in the yeast secretory pathway. Cell, 25, 461-469.
    • (1981) Cell , vol.25 , pp. 461-469
    • Novick, P.1    Ferro, S.2    Schekman, R.3
  • 26
    • 0023042283 scopus 로고
    • Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes
    • Studier,F.W. and Moffatt,B.A. (1986) Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes. J. Mol. Biol., 189, 113-130.
    • (1986) J. Mol. Biol. , vol.189 , pp. 113-130
    • Studier, F.W.1    Moffatt, B.A.2
  • 28
    • 0027527762 scopus 로고
    • Yeast syntaxins Sso1p and Sso2p belong to a family of related membrane proteins that function in vesicular transport
    • Aalto,M.K., Ronne,H. and Keränen,S. (1993) Yeast syntaxins Sso1p and Sso2p belong to a family of related membrane proteins that function in vesicular transport. EMBO J., 12, 4095-4104.
    • (1993) EMBO J. , vol.12 , pp. 4095-4104
    • Aalto, M.K.1    Ronne, H.2    Keränen, S.3
  • 30
    • 0027203762 scopus 로고
    • Division of labor among monomers within the Mu transposase tetramer
    • Baker,T.A., Mizuuchi,M., Savilahti,H. and Mizuuchi,K. (1993) Division of labor among monomers within the Mu transposase tetramer. Cell, 74, 723-733.
    • (1993) Cell , vol.74 , pp. 723-733
    • Baker, T.A.1    Mizuuchi, M.2    Savilahti, H.3    Mizuuchi, K.4
  • 31
    • 0035139796 scopus 로고    scopus 로고
    • Expression, purification, and properties of Rab8 function in actin cortical skeleton organization and polarized transport
    • Peränen,J. and Furuhjelm,J. (2001) Expression, purification, and properties of Rab8 function in actin cortical skeleton organization and polarized transport. Methods Enzymol., 329, 188-196.
    • (2001) Methods Enzymol. , vol.329 , pp. 188-196
    • Peränen, J.1    Furuhjelm, J.2
  • 32
    • 0036156745 scopus 로고    scopus 로고
    • Efficient insertion mutagenesis strategy for bacterial genomes involving electroporation of in vitro-assembled DNA transposition complexes of bacteriophage Mu
    • Lamberg,A., Nieminen,S., Qiao,M. and Savilahti,H. (2002) Efficient insertion mutagenesis strategy for bacterial genomes involving electroporation of in vitro-assembled DNA transposition complexes of bacteriophage Mu. Appl. Environ. Microbiol., 68, 705-712.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 705-712
    • Lamberg, A.1    Nieminen, S.2    Qiao, M.3    Savilahti, H.4
  • 33
    • 0032850532 scopus 로고    scopus 로고
    • Incremental truncation as a strategy in the engineering of novel biocatalysts
    • Ostermeier,M., Nixon,A.E. and Benkovic,S.J. (1999) Incremental truncation as a strategy in the engineering of novel biocatalysts. Bioorg. Med. Chem., 7, 2139-2144.
    • (1999) Bioorg. Med. Chem. , vol.7 , pp. 2139-2144
    • Ostermeier, M.1    Nixon, A.E.2    Benkovic, S.J.3
  • 34
    • 0021755872 scopus 로고
    • Use of transposon-promoted deletions in DNA sequence analysis
    • Ahmed,A. (1984) Use of transposon-promoted deletions in DNA sequence analysis. J. Mol. Biol., 178, 941-948.
    • (1984) J. Mol. Biol. , vol.178 , pp. 941-948
    • Ahmed, A.1
  • 35
    • 0025114617 scopus 로고
    • Intramolecular transposition by a synthetic IS50 (Tn5) derivative
    • Tomcsanyi,T., Berg,C.M., Phadnis,S.H. and Berg,D.E. (1990) Intramolecular transposition by a synthetic IS50 (Tn5) derivative. J. Bacteriol., 172, 6348-6354.
    • (1990) J. Bacteriol. , vol.172 , pp. 6348-6354
    • Tomcsanyi, T.1    Berg, C.M.2    Phadnis, S.H.3    Berg, D.E.4
  • 36
    • 0030608405 scopus 로고    scopus 로고
    • Nested deletions from a fixed site as an aid to nucleotide sequencing: An in vitro system using Tn3 transposase
    • Morita,M., Umemoto,A., Li,Z.X., Nakazono,N. and Sugino,Y. (1996) Nested deletions from a fixed site as an aid to nucleotide sequencing: An in vitro system using Tn3 transposase. DNA Res., 3, 431-433.
    • (1996) DNA Res. , vol.3 , pp. 431-433
    • Morita, M.1    Umemoto, A.2    Li, Z.X.3    Nakazono, N.4    Sugino, Y.5
  • 37
    • 0031576341 scopus 로고    scopus 로고
    • Complementation of peptide fragments of the single domain protein chymotrypsin inhibitor 2
    • Ladurner,A.G., Itzhaki,L.S., de Prat Gay,G. and Fersht,A.R. (1997) Complementation of peptide fragments of the single domain protein chymotrypsin inhibitor 2. J. Mol. Biol., 273, 317-329.
    • (1997) J. Mol. Biol. , vol.273 , pp. 317-329
    • Ladurner, A.G.1    Itzhaki, L.S.2    de Prat Gay, G.3    Fersht, A.R.4
  • 38
    • 0141923570 scopus 로고    scopus 로고
    • Minimization of proteins by random fragmentation and selection
    • Rudgers,G.W. and Palzkill,T. (2003) Minimization of proteins by random fragmentation and selection. Methods Mol. Biol., 230, 71-81.
    • (2003) Methods Mol. Biol. , vol.230 , pp. 71-81
    • Rudgers, G.W.1    Palzkill, T.2
  • 39
    • 0034548711 scopus 로고    scopus 로고
    • Pentapeptide scanning mutagenesis: Encouraging old proteins to execute unusual tricks
    • Hayes,F. and Hallet,B. (2000) Pentapeptide scanning mutagenesis: encouraging old proteins to execute unusual tricks. Trends Microbiol. 8, 571-577.
    • (2000) Trends Microbiol. , vol.8 , pp. 571-577
    • Hayes, F.1    Hallet, B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.