-
1
-
-
34249983213
-
DNA nanomachines
-
DOI 10.1038/nnano.2007.104, PII NNANO2007104
-
Bath, J. and Turberfield, A.J. (2007) DNA nanomachines. Nat. Nanotech., 2, 275-284. (Pubitemid 46882966)
-
(2007)
Nature Nanotechnology
, vol.2
, Issue.5
, pp. 275-284
-
-
Bath, J.1
Turberfield, A.J.2
-
2
-
-
44949114259
-
Rapid genome sequencing with short universal tiling probes
-
DOI 10.1038/nbt1405, PII NBT1405
-
Pihlak, A., Baure, G., Hersoug, E., Lónnerberg, P., Metsis, A. and Linnarsson, S. (2008) Rapid genome sequencing with short universal tiling probes. Nat. Biotech., 26, 676-684. (Pubitemid 351809595)
-
(2008)
Nature Biotechnology
, vol.26
, Issue.6
, pp. 676-684
-
-
Pihlak, A.1
Bauren, G.2
Hersoug, E.3
Lonnerberg, P.4
Metsis, A.5
Linnarsson, S.6
-
3
-
-
33645028600
-
Folding DNA to create nanoscale shapes and patterns
-
Rothemund, P. (2006) Folding DNA to create nanoscale shapes and patterns. Nature, 440, 297-302.
-
(2006)
Nature
, vol.440
, pp. 297-302
-
-
Rothemund, P.1
-
4
-
-
73849093634
-
Self-assembly of carbon nanotubes into two-dimensional geometries using DNA origami templates
-
Maune, H.T., Han, S.-P., Barish, R.D., Bockrath, M., Iii, W.A.G., Rothemund, P.W.K. and Winfree, E. (2010) Self-assembly of carbon nanotubes into two-dimensional geometries using DNA origami templates. Nat. Nanotech., 5, 61-66.
-
(2010)
Nat. Nanotech.
, vol.5
, pp. 61-66
-
-
Maune, H.T.1
Han, S.-P.2
Barish, R.D.3
Bockrath, M.4
Iii, W.A.G.5
Rothemund, P.W.K.6
Winfree, E.7
-
5
-
-
4444298687
-
A synthetic DNA walker for molecular transport
-
DOI 10.1021/ja047543j
-
Shin, J.-S. and Pierce, N.A. (2004) A synthetic DNA walker for molecular transport. J. Am. Chem. Soc., 126, 10834-10835. (Pubitemid 39180556)
-
(2004)
Journal of the American Chemical Society
, vol.126
, Issue.35
, pp. 10834-10835
-
-
Shin, J.-S.1
Pierce, N.A.2
-
6
-
-
0035936116
-
Programmable and autonomous computing machine made of biomolecules
-
DOI 10.1038/35106533
-
Benenson, Y., Paz-Elizur, T., Adar, R., Keinan, E., Livneh, Z. and Shapiro, E. (2001) Programmable and autonomous computing machine made of biomolecules. Nature, 414, 430-434. (Pubitemid 34173721)
-
(2001)
Nature
, vol.414
, Issue.6862
, pp. 430-434
-
-
Benenson, Y.1
Paz-Elizur, T.2
Adar, R.3
Keinan, E.4
Llvneh, Z.5
Shapiro, E.6
-
7
-
-
38749133726
-
DNA-guided crystallization of colloidal nanoparticles
-
DOI 10.1038/nature06560, PII NATURE06560
-
Nykypanchuk, D., Maye, M.M., van der Lelie, D. and Gang, O. (2008) DNA-guided crystallization of colloidal nanoparticles. Nature, 451, 549-552. (Pubitemid 351186275)
-
(2008)
Nature
, vol.451
, Issue.7178
, pp. 549-552
-
-
Nykypanchuk, D.1
Maye, M.M.2
Van Der Lelie, D.3
Gang, O.4
-
8
-
-
38749110388
-
DNA-programmable nanoparticle crystallization
-
DOI 10.1038/nature06508, PII NATURE06508
-
Park, S.Y., Lytton-Jean, A.K.R., Lee, B., Weigand, S., Schatz, G.C. and Mirkin, C.A. (2008) DNA-programmable nanoparticle crystallization. Nature, 451, 553-556. (Pubitemid 351186267)
-
(2008)
Nature
, vol.451
, Issue.7178
, pp. 553-556
-
-
Park, S.Y.1
Lytton-Jean, A.K.R.2
Lee, B.3
Weigand, S.4
Schatz, G.C.5
Mirkin, C.A.6
-
9
-
-
78049347710
-
Chromatin ionic atmosphere analyzed by a mesoscale electrostatic approach
-
Gan, H.H. and Schlick, T. (2010) Chromatin ionic atmosphere analyzed by a mesoscale electrostatic approach. Biophys. J., 99, 2587-2596.
-
(2010)
Biophys. J.
, vol.99
, pp. 2587-2596
-
-
Gan, H.H.1
Schlick, T.2
-
10
-
-
34547430442
-
Ionic effects on viral DNA packaging and portal motor function in bacteriophage μ29
-
DOI 10.1073/pnas.0701323104
-
Fuller, D.N., Rickgauer, J.P., Jardine, P.J., Grimes, S., Anderson, D.L. and Smith, D.E. (2007) Ionic effects on viral DNA packaging and portal motor function in bacteriophage u29. Proc. Natl Acad. Sci. USA, 104, 11245-11250. (Pubitemid 47175126)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.27
, pp. 11245-11250
-
-
Fuller, D.N.1
Rickgauer, J.P.2
Jardine, P.J.3
Grimes, S.4
Anderson, D.L.5
Smith, D.E.6
-
11
-
-
36448931940
-
End-to-end stacking and liquid crystal condensation of 6 to 20 base pair DNA duplexes
-
Nakata, M., Zanchetta, G., Chapman, B., Jones, C., Cross, J., Pindak, R., Bellini, T. and Clark, N. (2007) End-to-end stacking and liquid crystal condensation of 6 to 20 base pair DNA duplexes. Science, 318, 1276.
-
(2007)
Science
, vol.318
, pp. 1276
-
-
Nakata, M.1
Zanchetta, G.2
Chapman, B.3
Jones, C.4
Cross, J.5
Pindak, R.6
Bellini, T.7
Clark, N.8
-
12
-
-
34547432557
-
Inter-DNA attraction mediated by divalent counterions
-
Qiu, X., Andresen, K., Kwok, L., Lamb, J., Park, H. and Pollack, L. (2007) Inter-DNA attraction mediated by divalent counterions. Phys. Rev. Lett., 99, 38104.
-
(2007)
Phys. Rev. Lett.
, vol.99
, pp. 38104
-
-
Qiu, X.1
Andresen, K.2
Kwok, L.3
Lamb, J.4
Park, H.5
Pollack, L.6
-
13
-
-
44849088283
-
Closing the lid on DNA end-to-end stacking interactions
-
Li, L., Pabit, S.A., Lamb, J.S., Park, H.Y. and Pollack, L. (2008) Closing the lid on DNA end-to-end stacking interactions. Appl. Phys. Lett., 92, 223901-1-223901-3.
-
(2008)
Appl. Phys. Lett.
, vol.92
, pp. 2239011-2239013
-
-
Li, L.1
Pabit, S.A.2
Lamb, J.S.3
Park, H.Y.4
Pollack, L.5
-
14
-
-
0001533502
-
Measurement of the repulsive force between polyelectrolyte molecules in ionic solution: Hydration forces between parallel DNA double helices
-
Rau, D.C., Lee, B. and Parsegian, V.A. (1984) Measurement of the repulsive force between polyelectrolyte molecules in ionic solution: hydration forces between parallel DNA double helices. Proc. Natl Acad. Sci. USA, 81, 2621-2625. (Pubitemid 14109311)
-
(1984)
Proceedings of the National Academy of Sciences of the United States of America
, vol.81
, Issue.9
, pp. 2621-2625
-
-
Rau, D.C.1
Lee, B.2
Parsegian, V.A.3
-
16
-
-
77951687980
-
Electrostatics of strongly charged biological polymers: Ion-mediated interactions and self-organization in nucleic acids and proteins
-
Wong, G.C.L. and Pollack, L. (2010) Electrostatics of strongly charged biological polymers: ion-mediated interactions and self-organization in nucleic acids and proteins. Ann. Rev. Phys. Chem., 61, 171-189.
-
(2010)
Ann. Rev. Phys. Chem.
, vol.61
, pp. 171-189
-
-
Wong, G.C.L.1
Pollack, L.2
-
17
-
-
0036055199
-
Colloquium: The physics of charge inversion in chemical and biological systems
-
Grosberg, A.Y., Nguyen, T.T. and Shklovskii, B.I. (2002) Colloquium: the physics of charge inversion in chemical and biological systems. Rev. Mod. Phys., 74, 329-345.
-
(2002)
Rev. Mod. Phys.
, vol.74
, pp. 329-345
-
-
Grosberg, A.Y.1
Nguyen, T.T.2
Shklovskii, B.I.3
-
18
-
-
77957903315
-
Physics of DNA: Unravelling hidden abilities encoded in the structure of 'the most important molecule'
-
Kornyshev, A.A. (2010) Physics of DNA: unravelling hidden abilities encoded in the structure of 'the most important molecule' . Phys. Chem. Chem. Phys., 12, 12352-12378.
-
(2010)
Phys. Chem. Chem. Phys.
, vol.12
, pp. 12352-12378
-
-
Kornyshev, A.A.1
-
19
-
-
77957562056
-
DNA-DNA interactions in tight supercoils are described by a small effective charge density
-
Maffeo, C., Schópflin, R., Brutzer, H., Stehr, R., Aksimentiev, A., Wedemann, G. and Seidel, R. (2010) DNA-DNA interactions in tight supercoils are described by a small effective charge density. Phys. Rev. Lett., 105, 158101.
-
(2010)
Phys. Rev. Lett.
, vol.105
, pp. 158101
-
-
Maffeo, C.1
Schópflin, R.2
Brutzer, H.3
Stehr, R.4
Aksimentiev, A.5
Wedemann, G.6
Seidel, R.7
-
20
-
-
41949124146
-
Molecular dynamics simulations of nucleic acid-protein complexes
-
MacKerell, A. Jr and Nilsson, L. (2008) Molecular dynamics simulations of nucleic acid-protein complexes. Curr. Op. Struct. Biol., 18, 194-199.
-
(2008)
Curr. Op. Struct. Biol.
, vol.18
, pp. 194-199
-
-
MacKerell Jr., A.1
Nilsson, L.2
-
21
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
DOI 10.1002/jcc.20289
-
Phillips, J.C., Braun, R., Wang, W., Gumbart, J., Tajkhorshid, E., Villa, E., Chipot, C., Skeel, R.D., Kale, L. and Schulten, K. (2005) Scalable molecular dynamics with NAMD. J. Comp. Chem., 26, 1781-1802. (Pubitemid 43078511)
-
(2005)
Journal of Computational Chemistry
, vol.26
, Issue.16
, pp. 1781-1802
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
Villa, E.6
Chipot, C.7
Skeel, R.D.8
Kale, L.9
Schulten, K.10
-
22
-
-
34250318638
-
Refinement of the AMBER force field for nucleic acids: Improving the description of α/γ conformers
-
DOI 10.1529/biophysj.106.097782
-
Perez, A., Marchan, I., Svozil, D., Sponer, J., Cheatham, T.E., Laughton, C.A. and Orozco, M. (2007) Refinement of the AMBER force field for nucleic acids: improving the description of a/g conformers. Biophys. J., 92, 3817-3829. (Pubitemid 46910569)
-
(2007)
Biophysical Journal
, vol.92
, Issue.11
, pp. 3817-3829
-
-
Perez, A.1
Marchan, I.2
Svozil, D.3
Sponer, J.4
Cheatham III, T.E.5
Laughton, C.A.6
Orozco, M.7
-
23
-
-
0032922174
-
A modified version of the Cornell et al. force field with improved sugar pucker phase and helical repeat
-
Cheatham, T.E.I., Cieplak, P. and Kollman, P.A. (1999) A modified version of the Cornell et al. force field with improved sugar pucker phase and helical repeat. J. Biomol. Struct. Dyn., 16, 845.
-
(1999)
J. Biomol. Struct. Dyn.
, vol.16
, pp. 845
-
-
Cheatham, T.E.I.1
Cieplak, P.2
Kollman, P.A.3
-
24
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen, W.L., Chandrasekhar, J., Madura, J.D., Impey, R.W. and Klein, M.L. (1983) Comparison of simple potential functions for simulating liquid water. J. Chem. Phys., 79, 926-935.
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
25
-
-
0001655657
-
Finite representation of an infinite bulk system: Solvent boundary potential for computer simulations
-
Beglov, D. and Roux, B. (1994) Finite representation of an infinite bulk system: solvent boundary potential for computer simulations. J. Chem. Phys., 100, 9050-9063.
-
(1994)
J. Chem. Phys.
, vol.100
, pp. 9050-9063
-
-
Beglov, D.1
Roux, B.2
-
26
-
-
36449003554
-
Constant pressure molecular dynamics algorithms
-
Martyna, G.J., Tobias, D.J. and Klein, M.L. (1994) Constant pressure molecular dynamics algorithms. J. Chem. Phys., 101, 4177-4189.
-
(1994)
J. Chem. Phys.
, vol.101
, pp. 4177-4189
-
-
Martyna, G.J.1
Tobias, D.J.2
Klein, M.L.3
-
27
-
-
11944256577
-
Iterative minimization techniques for ab initio total-energy calculations: Molecular dynamics and conjugate gradients
-
Payne, M.C., Teter, M.P., Allan, D.C., Arias, T.A. and Joannopoulos, J.D. (1992) Iterative minimization techniques for ab initio total-energy calculations: molecular dynamics and conjugate gradients. Rev. Mod. Phys., 64, 1045-1097.
-
(1992)
Rev. Mod. Phys.
, vol.64
, pp. 1045-1097
-
-
Payne, M.C.1
Teter, M.P.2
Allan, D.C.3
Arias, T.A.4
Joannopoulos, J.D.5
-
28
-
-
33645004171
-
Intrinsic rates and activation free energies from single-molecule pulling experiments
-
Dudko, O., Hummer, G. and Szabo, A. (2006) Intrinsic rates and activation free energies from single-molecule pulling experiments. Phys. Rev. Lett., 96, 108101.
-
(2006)
Phys. Rev. Lett.
, vol.96
, pp. 108101
-
-
Dudko, O.1
Hummer, G.2
Szabo, A.3
-
29
-
-
77949317269
-
Understanding biology by stretching proteins: Recent progress
-
Galera-Prat, A., Gómez-Sicilia, A., Oberhauser, A.F., Cieplak, M. and Carrión-Vázquez, M. (2010) Understanding biology by stretching proteins: recent progress. Curr. Op. Struct. Biol., 20, 63-69.
-
(2010)
Curr. Op. Struct. Biol.
, vol.20
, pp. 63-69
-
-
Galera-Prat, A.1
Gómez-Sicilia, A.2
Oberhauser, A.F.3
Cieplak, M.4
Carrión-Vázquez, M.5
-
30
-
-
0035003803
-
Steered molecular dynamics investigations of protein function
-
DOI 10.1016/S1093-3263(00)00133-9, PII S1093326300001339
-
Isralewitz, B., Baudry, J., Gullingsrud, J., Kosztin, D. and Schulten, K. (2001) Steered molecular dynamics investigations of protein function. J. Mol. Graph. Model., 19, 13-25. (Pubitemid 32411500)
-
(2001)
Journal of Molecular Graphics and Modelling
, vol.19
, Issue.1
, pp. 13-25
-
-
Isralewitz, B.1
Baudry, J.2
Gullingsrud, J.3
Kosztin, D.4
Schulten, K.5
-
31
-
-
0342929614
-
Nonphysical sampling distributions in Monte Carlo free-energy estimation: Umbrella sampling
-
Torrie, G. and Valleau, J. (1977) Nonphysical sampling distributions in Monte Carlo free-energy estimation: umbrella sampling. J. Comput. Phys., 23, 187-199.
-
(1977)
J. Comput. Phys.
, vol.23
, pp. 187-199
-
-
Torrie, G.1
Valleau, J.2
-
32
-
-
0029633155
-
The calculation of the potential of mean force using computer simulations
-
Roux, B. (1995) The calculation of the potential of mean force using computer simulations. Comput. Phys. Commun., 91, 275-282.
-
(1995)
Comput. Phys. Commun.
, vol.91
, pp. 275-282
-
-
Roux, B.1
-
33
-
-
33746677518
-
Overview of the structure of all-AT oligonucleotides: Organization in helices and packing interactions
-
DOI 10.1529/biophysj.106.084210
-
Campos, L., Valls, N., UrpíL., Gouyette, C., Sanmartí, T., Richter, M., Alechaga, E., Santaolalla, A., Baldini, R., Creixell, M. et al. (2006) Overview of the structure of all-AT oligonucleotides: organization in helices and packing interactions. Biophys. J., 91, 892-903. (Pubitemid 44161921)
-
(2006)
Biophysical Journal
, vol.91
, Issue.3
, pp. 892-903
-
-
Campos, L.1
Valls, N.2
Urpi, L.3
Gouyette, C.4
Sanmartn, T.5
Richter, M.6
Alechaga, E.7
Santaolalla, A.8
Baldini, R.9
Creixell, M.10
Ciurans, R.11
Skokan, P.12
Pous, J.13
Subirana, J.A.14
-
36
-
-
77955692216
-
Free energy calculations reveal rotating-ratchet mechanism for DNA supercoil relaxation by topoisomerase IB and its inhibition
-
Wereszczynski, J. and Andricioaei, I. (2010) Free energy calculations reveal rotating-ratchet mechanism for DNA supercoil relaxation by topoisomerase IB and its inhibition. Biophys. J., 99, 869-878.
-
(2010)
Biophys. J.
, vol.99
, pp. 869-878
-
-
Wereszczynski, J.1
Andricioaei, I.2
-
37
-
-
0025693458
-
Analytical solution of reversible step growth polymerization in semibatch reactors
-
Kumar, A. and Khanna, A. (1990) Analytical solution of reversible step growth polymerization in semibatch reactors. J. Appl. Polymer Sci., 41, 2077-2094.
-
(1990)
J. Appl. Polymer Sci.
, vol.41
, pp. 2077-2094
-
-
Kumar, A.1
Khanna, A.2
-
38
-
-
0032539693
-
A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
-
SantaLucia, J. Jr (1998) A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc. Natl Acad. Sci. USA, 95, 1460-1465. (Pubitemid 128624151)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.4
, pp. 1460-1465
-
-
SantaLucia Jr., J.1
-
39
-
-
0034194135
-
Thermodynamic parameters for DNA sequences with dangling ends
-
Bommarito, S., Peyret, N. and SantaLucia, J. Jr (2000) Thermodynamic parameters for DNA sequences with dangling ends. Nucl. Acids Res., 28, 1929-1934. (Pubitemid 30229658)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.9
, pp. 1929-1934
-
-
Bommarito, S.1
Peyret, N.2
SantaLucia Jr., J.3
-
40
-
-
0035369056
-
Parallel multiplex thermodynamic analysis of coaxial base stacking in DNA duplexes by oligodeoxyribonucleotide microchips
-
Vasiliskov, V.A., Prokopenko, D.V. and Mirzabekov, A.D. (2001) Parallel multiplex thermodynamic analysis of coaxial base stacking in DNA duplexes by oligodeoxyribonucleotide microchips. Nucl. Acids Res., 29, 2303-2313. (Pubitemid 32514933)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.11
, pp. 2303-2313
-
-
Vasiliskov, V.A.1
Prokopenko, D.V.2
Mirzabekov, A.D.3
-
41
-
-
0348010259
-
Efficiency of coaxial stacking depends on the DNA duplex structure
-
Pyshnyi, D.V., Goldberg, E.L. and Ivanova, E.M. (2003) Efficiency of coaxial stacking depends on the DNA duplex structure. J. Biomol. Struct. Dyn., 21, 459-468.
-
(2003)
J. Biomol. Struct. Dyn.
, vol.21
, pp. 459-468
-
-
Pyshnyi, D.V.1
Goldberg, E.L.2
Ivanova, E.M.3
-
42
-
-
4444260310
-
Stacked-unstacked equilibrium at the nick site of DNA
-
DOI 10.1016/j.jmb.2004.07.075, PII S0022283604009167
-
Protozanova, E., Yakovchuk, P. and Frank-Kamenetskii, M.D. (2004) Stacked-unstacked equilibrium at the nick site of DNA. J. Mol. Biol., 342, 775-785. (Pubitemid 39165649)
-
(2004)
Journal of Molecular Biology
, vol.342
, Issue.3
, pp. 775-785
-
-
Protozanova, E.1
Yakovchuk, P.2
Frank-Kamenetskii, M.D.3
-
43
-
-
32644434270
-
Base-stacking and base-pairing contributions into thermal stability of the DNA double helix
-
DOI 10.1093/nar/gkj454
-
Yakovchuk, P., Protozanova, E. and Frank-Kamenetskii, M.D. (2006) Base-stacking and base-pairing contributions into thermal stability of the DNA double helix. Nucl. Acids Res., 34, 564-574. (Pubitemid 43240244)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.2
, pp. 564-574
-
-
Yakovchuk, P.1
Protozanova, E.2
Frank-Kamenetskii, M.D.3
-
44
-
-
61649101956
-
Peeling single-stranded DNA from graphite surface to determine oligonucleotide binding energy by force spectroscopy
-
Manohar, S., Mantz, A.R., Bancroft, K.E., Hui, C.-Y., Jagota, A. and Vezenov, D.V. (2008) Peeling single-stranded DNA from graphite surface to determine oligonucleotide binding energy by force spectroscopy. Nano Lett., 8, 4365-4372.
-
(2008)
Nano Lett.
, vol.8
, pp. 4365-4372
-
-
Manohar, S.1
Mantz, A.R.2
Bancroft, K.E.3
Hui, C.-Y.4
Jagota, A.5
Vezenov, D.V.6
-
45
-
-
14944373219
-
On the mechanism of hydrophobic association of nanoscopic solutes
-
DOI 10.1021/ja0441817
-
Choudhury, N. and Pettitt, B.M. (2005) On the mechanism of hydrophobic association of nanoscopic solutes. J. Am. Chem. Soc., 127, 3556-3567. (Pubitemid 40365294)
-
(2005)
Journal of the American Chemical Society
, vol.127
, Issue.10
, pp. 3556-3567
-
-
Choudhury, N.1
Pettitt, B.M.2
-
46
-
-
53549119413
-
Interaction of C60 derivatives and ssDNA from simulations
-
Zhao, X. (2008) Interaction of C60 derivatives and ssDNA from simulations. J. Phys. Chem. C, 112, 8898-8906.
-
(2008)
J. Phys. Chem.
, vol.112 C
, pp. 8898-8906
-
-
Zhao, X.1
-
47
-
-
38749118972
-
Probing the structure of DNA-carbon nanotube hybrids with molecular dynamics
-
DOI 10.1021/nl071909j
-
Johnson, R.R., Johnson, A.T.C. and Klein, M.L. (2008) Probing the structure of DNA-carbon nanotube hybrids with molecular dynamics. Nano Lett., 8, 69-75. (Pubitemid 351177777)
-
(2008)
Nano Letters
, vol.8
, Issue.1
, pp. 69-75
-
-
Johnson, R.R.1
Johnson, A.T.C.2
Klein, M.L.3
-
48
-
-
0001191247
-
DNA flexibility studied by covalent closure of short fragments into circles
-
Shore, D., Langowski, J. and Baldwin, R.L. (1981) DNA flexibility studied by covalent closure of short fragments into circles. Proc. Natl Acad. Sci. USA, 78, 4833-4837. (Pubitemid 12225575)
-
(1981)
Proceedings of the National Academy of Sciences of the United States of America
, vol.78
, Issue.8
, pp. 4833-4837
-
-
Shore, D.1
Langowski, J.2
Baldwin, R.L.3
-
49
-
-
0042839614
-
Mechanism and regulation of human non-homologous DNA end-joining
-
DOI 10.1038/nrm1202
-
Lieber, M.R., Ma, Y., Pannicke, U. and Schwarz, K. (2003) Mechanism and regulation of human non-homologous DNA end-joining. Nat. Rev. Mol. Cell Biol., 4, 712-720. (Pubitemid 37082186)
-
(2003)
Nature Reviews Molecular Cell Biology
, vol.4
, Issue.9
, pp. 712-720
-
-
Lieber, M.R.1
Ma, Y.2
Pannicke, U.3
Schwarz, K.4
-
50
-
-
4544362838
-
The mechanism of non-homologous end-joining: A synopsis of synapsis
-
DOI 10.1016/j.dnarep.2004.06.003, PII S156878640400179X
-
Weterings, E. and van Gent, D.C. (2004) The mechanism of nonhomologous end-joining: a synopsis of synapsis. DNA Repair, 3, 1425-1435. (Pubitemid 39221740)
-
(2004)
DNA Repair
, vol.3
, Issue.11
, pp. 1425-1435
-
-
Weterings, E.1
Van Gent, D.C.2
-
51
-
-
0026796061
-
DNA bending flexibility, and helical repeat by cyclization kinetics
-
Crothers, D.M., Drak, J., Kahn, J.D. and Levene, S.D. (1992) DNA bending, flexibility, and helical repeat by cyclization kinetics. Meth. Enzym., 212, 3-29.
-
(1992)
Meth. Enzym.
, vol.212
, pp. 3-29
-
-
Crothers, D.M.1
Drak, J.2
Kahn, J.D.3
Levene, S.D.4
-
52
-
-
0030834853
-
Binding pathway of retinal to bacterio-opsin: A prediction by molecular dynamics simulations
-
Isralewitz, B., Izrailev, S. and Schulten, K. (1997) Binding pathway of retinal to bacterio-opsin: a prediction by molecular dynamics simulations. Biophys. J., 73, 2972-2979. (Pubitemid 27525764)
-
(1997)
Biophysical Journal
, vol.73
, Issue.6
, pp. 2972-2979
-
-
Isralewitz, B.1
Izrailev, S.2
Schulten, K.3
-
53
-
-
4243754128
-
Nonequilibrium equality for free energy differences
-
Jarzynski, C. (1997) Nonequilibrium equality for free energy differences. Phys. Rev. Lett., 78, 2690-2693. (Pubitemid 127655287)
-
(1997)
Physical Review Letters
, vol.78
, Issue.14
, pp. 2690-2693
-
-
Jarzynski, C.1
-
54
-
-
0032753202
-
Free energy calculations of watson-crick base pairing in aqueous solution
-
Stofer, E., Chipot, C. and Lavery, R. (1999) Free energy calculations of watson-crick base pairing in aqueous solution. J. Am. Chem. Soc., 121, 9503-9508.
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 9503-9508
-
-
Stofer, E.1
Chipot, C.2
Lavery, R.3
-
55
-
-
0342929614
-
Nonphysical sampling distributions in Monte Carlo free-energy estimation: Umbrella sampling
-
Torrie, G. and Valleau, J. (1977) Nonphysical sampling distributions in Monte Carlo free-energy estimation: umbrella sampling. J. Comput. Phys., 23, 187-199.
-
(1977)
J. Comput. Phys.
, vol.23
, pp. 187-199
-
-
Torrie, G.1
Valleau, J.2
-
56
-
-
0029633155
-
The calculation of the potential of mean force using computer simulations
-
Roux, B. (1995) The calculation of the potential of mean force using computer simulations. Comput. Phys. Commun., 91, 275-282.
-
(1995)
Comput. Phys. Commun.
, vol.91
, pp. 275-282
-
-
Roux, B.1
-
59
-
-
0038311893
-
Osmotic shock and the strength of viral capsids
-
Cordova, A., Deserno, M., Gelbart, W.M., Gelbart, W.M. and Ben-Shaul, A. (2003) Osmotic shock and the strength of viral capsids. Biophys. J., 85, 70-74. (Pubitemid 36753617)
-
(2003)
Biophysical Journal
, vol.85
, Issue.1
, pp. 70-74
-
-
Cordova, A.1
Deserno, M.2
Gelbart, W.M.3
Ben-Shaul, A.4
-
60
-
-
0035418738
-
Osmotic properties of DNA: Critical evaluation of counterion condensation theory
-
Hansen, P., Podgornik, R. and Parsegian, V. (2001) Osmotic properties of DNA: critical evaluation of counterion condensation theory. Phys. Rev. E, 64, 1-4.
-
(2001)
Phys. Rev. e
, vol.64
, pp. 1-4
-
-
Hansen, P.1
Podgornik, R.2
Parsegian, V.3
-
61
-
-
0025693458
-
Analytical solution of reversible step growth polymerization in semibatch reactors
-
Kumar, A. and Khanna, A. (1990) Analytical solution of reversible step growth polymerization in semibatch reactors. J. Appl. Polymer Sci., 41, 2077-2094.
-
(1990)
J. Appl. Polymer Sci.
, vol.41
, pp. 2077-2094
-
-
Kumar, A.1
Khanna, A.2
|