-
1
-
-
34249773227
-
Cellulases and their interaction with cellulose
-
Henrissat B (1994) Cellulases and their interaction with cellulose. Cellulose 1:169-196
-
(1994)
Cellulose
, vol.1
, pp. 169-196
-
-
Henrissat, B.1
-
2
-
-
0031149857
-
Crystalline cellulose degradation: New insight into the function of cellobiohydrolases
-
DOI 10.1016/S0167-7799(97)01032-9, PII S0167779997010329
-
Teeri TT (1997) Crystalline cellulose degradation: new insight into the function of cellobiohydrolases. Trends Biotechnol 15:160-167 (Pubitemid 27219573)
-
(1997)
Trends in Biotechnology
, vol.15
, Issue.5
, pp. 160-167
-
-
Teeri, T.T.1
-
3
-
-
0345676498
-
High-resolution crystal structures reveal how a cellulose chain is bound in the 50 A long tunnel of cellobiohydrolase I from Trichoderma reesei
-
DOI 10.1006/jmbi.1997.1437
-
Divne C, Stahlberg J, Teeri TT, Jones TA (1998) High-resolution crystal structures reveal how a cellulose chain is bound in the 50 A long tunnel of cellobiohydrolase I from Trichoderma reesei. J Mol Biol 275:309-325 (Pubitemid 28030006)
-
(1998)
Journal of Molecular Biology
, vol.275
, Issue.2
, pp. 309-325
-
-
Divne, C.1
Stahlberg, J.2
Teeri, T.T.3
Jones, T.A.4
-
4
-
-
0029023464
-
Identification of functionally important amino acids in the cellulose-binding domain of Trichoderma reesei cellobiohydrolase i
-
Linder M, Mattinen ML, Kontteli M, Lindeberg G, Stahlberg J, Drakenberg T, Reinikainen T, Pettersson G, Annila A (1995) Identification of functionally important amino acids in the cellulose-binding domain of Trichoderma reesei cellobiohydrolase I. Protein Sci 4:1056-1064
-
(1995)
Protein Sci
, vol.4
, pp. 1056-1064
-
-
Linder, M.1
Mattinen, M.L.2
Kontteli, M.3
Lindeberg, G.4
Stahlberg, J.5
Drakenberg, T.6
Reinikainen, T.7
Pettersson, G.8
Annila, A.9
-
5
-
-
0031800353
-
Trichoderma reesei cellobiohydrolases: Why so efficient on crystalline cellulose?
-
Teeri TT, Koivula A, Linder M, Wohlfahrt G, Divne C, Jones TA (1998) Trichoderma reesei cellobiohydrolases: why so efficient on crystalline cellulose? Biochem Soc Trans 26:173-178 (Pubitemid 28263691)
-
(1998)
Biochemical Society Transactions
, vol.26
, Issue.2
, pp. 173-178
-
-
Teeri, T.T.1
Koivula, A.2
Linder, M.3
Wohlfahrt, G.4
Divne, C.5
Jonest, T.A.6
-
6
-
-
0024277381
-
Studies of the cellulolytic system of Trichoderma reesei QM 9414. Analysis of domain function in two cellobiohydrolases by limited proteolysis
-
Tomme P, Van Tilbeurgh H, Pettersson G, van Damme J, Vandekerckhove J, Knowles J, Teeri T, Claeyssens M (1988) Studies of the cellulolytic system of Trichoderma reesei QM 9414. Analysis of domain function in two cellobiohydrolases by limited proteolysis. Eur J Biochem 170:575-581
-
(1988)
Eur J Biochem
, vol.170
, pp. 575-581
-
-
Tomme, P.1
Van Tilbeurgh, H.2
Pettersson, G.3
Van Damme, J.4
Vandekerckhove, J.5
Knowles, J.6
Teeri, T.7
Claeyssens, M.8
-
7
-
-
0027968302
-
The three-dimensional crystal structure of the catalytic core of cellobiohydrolase I from Trichoderma reesei
-
Divne C, Stahlberg J, Reinikainen T, Ruohonen L, Pettersson G, Knowles JK, Teeri TT, Jones TA (1994) The three-dimensional crystal structure of the catalytic core of cellobiohydrolase I from Trichoderma reesei. Science 265:524-528 (Pubitemid 24264997)
-
(1994)
Science
, vol.265
, Issue.5171
, pp. 524-528
-
-
Divne, C.1
Stahlberg, J.2
Reinikainen, T.3
Ruohonen, L.4
Pettersson, G.5
Knowles, J.K.C.6
Teeri, T.T.7
Jones, T.A.8
-
8
-
-
0030065736
-
Identification of two functionally different classes of exocellulases
-
DOI 10.1021/bi9520388
-
Barr BK, Hsieh YL, Ganem B, Wilson DB (1996) Identification of two functionally different classes of exocellulases. Biochemistry 35:586-592 (Pubitemid 26032711)
-
(1996)
Biochemistry
, vol.35
, Issue.2
, pp. 586-592
-
-
Barr, B.K.1
Hsieh, Y.-L.2
Ganem, B.3
Wilson, D.B.4
-
9
-
-
0031666637
-
Unidirectional processive action of cellobiohydrolase Cel7A on Valonia cellulose microcrystals
-
DOI 10.1016/S0014-5793(98)00845-X, PII S001457939800845X
-
Imai T, Boisset C, Samejima M, Igarashi K, Sugiyama J (1998) Unidirectional processive action of cellobiohydrolase Cel7A on Valonia cellulose microcrystals. FEBS Lett 432:113-116 (Pubitemid 28473257)
-
(1998)
FEBS Letters
, vol.432
, Issue.3
, pp. 113-116
-
-
Imai, T.1
Boisset, C.2
Samejima, M.3
Igarashi, K.4
Sugiyama, J.5
-
10
-
-
0024962351
-
Determination of the three-dimensional solution structure of the C-terminal domain of cellobiohydrolase i from Trichoderma reesei. A study using nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing
-
Kraulis J, Clore GM, Nilges M, Jones TA, Pettersson G, Knowles J, Gronenborn AM (1989) Determination of the three-dimensional solution structure of the C-terminal domain of cellobiohydrolase I from Trichoderma reesei. A study using nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing. Biochemistry 28:7241-7257
-
(1989)
Biochemistry
, vol.28
, pp. 7241-7257
-
-
Kraulis, J.1
Clore, G.M.2
Nilges, M.3
Jones, T.A.4
Pettersson, G.5
Knowles, J.6
Gronenborn, A.M.7
-
11
-
-
68149156908
-
The energy landscape for the interaction of the Family 1 carbohydratebinding module and the cellulose surface is altered by hydrolyzed glycosidic bonds
-
Bu L, Beckham GT, Crowley MF, Chang CH, Matthews JF, Bomble YJ, Adney WS, Himmel ME, Nimlos MR (2009) The energy landscape for the interaction of the Family 1 carbohydratebinding module and the cellulose surface is altered by hydrolyzed glycosidic bonds. J Phys Chem B 113:10994-11002
-
(2009)
J Phys Chem B
, vol.113
, pp. 10994-11002
-
-
Bu, L.1
Beckham, G.T.2
Crowley, M.F.3
Chang, C.H.4
Matthews, J.F.5
Bomble, Y.J.6
Adney, W.S.7
Himmel, M.E.8
Nimlos, M.R.9
-
12
-
-
76249113333
-
Identification of amino acids responsible for processivity in a Family 1 carbohydrate-binding module from a fungal cellulase
-
Beckham GT, Matthews JF, Bomble YJ, Bu L, Adney WS, Himmel ME, Nimlos MR, Crowley MF (2010) Identification of amino acids responsible for processivity in a Family 1 carbohydrate-binding module from a fungal cellulase. J Phys Chem B 114:1447-1453
-
(2010)
J Phys Chem B
, vol.114
, pp. 1447-1453
-
-
Beckham, G.T.1
Matthews, J.F.2
Bomble, Y.J.3
Bu, L.4
Adney, W.S.5
Himmel, M.E.6
Nimlos, M.R.7
Crowley, M.F.8
-
13
-
-
34347381336
-
Molecular modeling suggests induced fit of Family I carbohydrate-binding modules with a broken-chain cellulose surface
-
DOI 10.1093/protein/gzm010
-
Nimlos MR, Matthews JF, Crowley MF, Walker RC, Chukkapalli G, Brady JW, Adney WS, Cleary JM, Zhong L, Himmel ME (2007) Molecular modeling suggests induced fit of Family I carbohydrate-binding modules with a broken-chain cellulose surface. Protein Eng Des Sel 20:179-187 (Pubitemid 351321299)
-
(2007)
Protein Engineering, Design and Selection
, vol.20
, Issue.4
, pp. 179-187
-
-
Nimlos, M.R.1
Matthews, J.F.2
Crowley, M.F.3
Walker, R.C.4
Chukkapalli, G.5
Brady, J.W.6
Adney, W.S.7
Cleary, J.M.8
Zhong, L.9
Himmel, M.E.10
-
14
-
-
36849077550
-
Nonlinear scaling schemes for Lennard-Jones interactions in free energy calculations
-
Steinbrecher T, Mobley DL, Case DA (2007) Nonlinear scaling schemes for Lennard-Jones interactions in free energy calculations. J Chem Phys 127:214108
-
(2007)
J Chem Phys
, vol.127
, pp. 214108
-
-
Steinbrecher, T.1
Mobley, D.L.2
Case, D.A.3
-
15
-
-
33646471468
-
Statistical mechanics of fluid mixtures
-
Kirkwood JG (1935) Statistical mechanics of fluid mixtures. J Chem Phys 3:300-313
-
(1935)
J Chem Phys
, vol.3
, pp. 300-313
-
-
Kirkwood, J.G.1
-
16
-
-
58149142814
-
Calculating chemically accurate redox potentials for engineered flavoproteins from classical molecular dynamics free energy simulations
-
Sattelle BM, Sutcliffe MJ (2008) Calculating chemically accurate redox potentials for engineered flavoproteins from classical molecular dynamics free energy simulations. J Phys Chem A 112:13053-13057
-
(2008)
J Phys Chem A
, vol.112
, pp. 13053-13057
-
-
Sattelle, B.M.1
Sutcliffe, M.J.2
-
17
-
-
77249136920
-
Substrate recognition in HIV-1 protease: A computational study
-
Perez MA, Fernandes PA, Ramos MJ (2010) Substrate recognition in HIV-1 protease: a computational study. J Phys Chem B 114:2525-2532
-
(2010)
J Phys Chem B
, vol.114
, pp. 2525-2532
-
-
Perez, M.A.1
Fernandes, P.A.2
Ramos, M.J.3
-
18
-
-
0141990949
-
Extremely precise free energy calculations of amino acid side chain analogs: Comparison of common molecular mechanics force fields for proteins
-
Shirts MR, Pitera JW, Swope WC, Pande VS (2003) Extremely precise free energy calculations of amino acid side chain analogs: comparison of common molecular mechanics force fields for proteins. J Chem Phys 119:5740-5761
-
(2003)
J Chem Phys
, vol.119
, pp. 5740-5761
-
-
Shirts, M.R.1
Pitera, J.W.2
Swope, W.C.3
Pande, V.S.4
-
20
-
-
34249086642
-
Acetylcholinesterase: Mechanisms of covalent inhibition of wild-type and H447I mutant determined by computational analyses
-
DOI 10.1021/ja070601r
-
Cheng Y, Cheng X, Radic Z, McCammon JA (2007) Acetylcholinesterase: mechanisms of covalent inhibition of wild-type and H447I mutant determined by computational analyses. J Am Chem Soc 129:6562-6570 (Pubitemid 46799354)
-
(2007)
Journal of the American Chemical Society
, vol.129
, Issue.20
, pp. 6562-6570
-
-
Cheng, Y.1
Cheng, X.2
Radic, Z.3
McCammon, J.A.4
-
21
-
-
73249150721
-
Analysis of an anomalous mutant of MutM DNA glycosylase leads to new insights into the catalytic mechanism
-
Nam K, Verdine GL, Karplus M (2009) Analysis of an anomalous mutant of MutM DNA glycosylase leads to new insights into the catalytic mechanism. J Am Chem Soc 131:18208-18209
-
(2009)
J Am Chem Soc
, vol.131
, pp. 18208-18209
-
-
Nam, K.1
Verdine, G.L.2
Karplus, M.3
-
22
-
-
77952786853
-
Protein thermostability calculations using alchemical free energy simulations
-
Seeliger D, de Groot BL (2010) Protein thermostability calculations using alchemical free energy simulations. Biophys J 98:2309-2316
-
(2010)
Biophys J
, vol.98
, pp. 2309-2316
-
-
Seeliger, D.1
De Groot, B.L.2
-
23
-
-
0037036704
-
Crystal structure and hydrogen-bonding system in cellulose Iβ from synchrotron X-ray and neutron fiber diffraction
-
DOI 10.1021/ja0257319
-
Nishiyama Y, Langan P, Chanzy H (2002) Crystal structure and hydrogen-bonding system in cellulose 1 beta from synchrotron Xray and neutron fiber diffraction. J Am Chem Soc 124:9074-9082 (Pubitemid 34847668)
-
(2002)
Journal of the American Chemical Society
, vol.124
, Issue.31
, pp. 9074-9082
-
-
Nishiyama, Y.1
Langan, P.2
Chanzy, H.3
-
24
-
-
30344440627
-
-
University of California, San Francisco
-
Case DA, Darden TA, Cheatham TE III, Simmerling CL, Wang J, Duke RE, Luo R, Crowley MF, Walker RC, Zhang W, Merz KM, Wang BC, Hayik S, Roitberg A, Seabra G, Kolossváry I, Wong KF, Paesani F, Vanicek J, Wu X, Brozell SR, Steinbrecher T, Gohlke H, Yang L, Tan C, Mongan J, Hornak V, Cui G, Mathews DH, Seetin MG, Sagui C, Babin V, Kollman PA (2008) AMBER 10. University of California, San Francisco
-
(2008)
AMBER
, vol.10
-
-
Case, D.A.1
Darden, T.A.2
Cheatham Iii, T.E.3
Simmerling, C.L.4
Wang, J.5
Duke, R.E.6
Luo, R.7
Crowley, M.F.8
Walker, R.C.9
Zhang, W.10
Merz, K.M.11
Wang, B.C.12
Hayik, S.13
Roitberg, A.14
Seabra, G.15
Kolossváry, I.16
Wong, K.F.17
Paesani, F.18
Vanicek, J.19
Wu, X.20
Brozell, S.R.21
Steinbrecher, T.22
Gohlke, H.23
Yang, L.24
Tan, C.25
Mongan, J.26
Hornak, V.27
Cui, G.28
Mathews, D.H.29
Seetin, M.G.30
Sagui, C.31
Babin, V.32
Kollman, P.A.33
more..
-
25
-
-
33748518255
-
Comparison of multiple amber force fields and development of improved protein backbone parameters
-
DOI 10.1002/prot.21123
-
Hornak V, Abel R, Okur A, Strockbine B, Roitberg A, Simmerling C (2006) Comparison of multiple Amber force fields and development of improved protein backbone parameters. Proteins 65:712-725 (Pubitemid 44583220)
-
(2006)
Proteins: Structure, Function and Genetics
, vol.65
, Issue.3
, pp. 712-725
-
-
Hornak, V.1
Abel, R.2
Okur, A.3
Strockbine, B.4
Roitberg, A.5
Simmerling, C.6
-
26
-
-
39049147617
-
GLYCAM06: A generalizable biomolecular force field. carbohydrates
-
DOI 10.1002/jcc.20820
-
Kirschner KN, Yongye AB, Tschampel SM, Gonzalez-Outeirino J, Daniels CR, Foley BL, Woods RJ (2008) GLYCAM06: a generalizable biomolecular force field. Carbohydrates. J Comput Chem 29:622-655 (Pubitemid 351238844)
-
(2008)
Journal of Computational Chemistry
, vol.29
, Issue.4
, pp. 622-655
-
-
Kirschner, K.N.1
Yongye, A.B.2
Tschampel, S.M.3
Gonzalez-Outeirino, J.4
Daniels, C.R.5
Foley, B.L.6
Woods, R.J.7
-
28
-
-
33645961739
-
A smooth particle mesh Ewald method
-
Essmann U, Perera L, Berkowitz ML, Darden T, Lee H, Pedersen LG (1995) A smooth particle mesh Ewald method. J Chem Phys 103:8577-8593
-
(1995)
J Chem Phys
, vol.103
, pp. 8577-8593
-
-
Essmann, U.1
Perera, L.2
Berkowitz, M.L.3
Darden, T.4
Lee, H.5
Pedersen, L.G.6
-
29
-
-
33646940952
-
Numericalintegration of cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
-
Ryckaert JP, Ciccotti G, Berendsen HJC (1977) Numericalintegration of cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J Comput Phys 23:327-341
-
(1977)
J Comput Phys
, vol.23
, pp. 327-341
-
-
Ryckaert, J.P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
30
-
-
77956884637
-
T-Analyst: A program for efficient analysis of protein conformational changes by torsion angles
-
Ai R, Qaiser Fatmi M, Chang CE (2010) T-Analyst: a program for efficient analysis of protein conformational changes by torsion angles. J Comput Aided Mol Des 24:819-827
-
(2010)
J Comput Aided Mol des
, vol.24
, pp. 819-827
-
-
Ai, R.1
Qaiser Fatmi, M.2
Chang, C.E.3
-
31
-
-
75649127595
-
Systematic docking study of the carbohydrate binding module protein of Cel7A with the cellulose Ialpha crystal model
-
Yui T, Shiiba H, Tsutsumi Y, Hayashi S, Miyata T, Hirata F (2010) Systematic docking study of the carbohydrate binding module protein of Cel7A with the cellulose Ialpha crystal model. J Phys Chem B 114:49-58
-
(2010)
J Phys Chem B
, vol.114
, pp. 49-58
-
-
Yui, T.1
Shiiba, H.2
Tsutsumi, Y.3
Hayashi, S.4
Miyata, T.5
Hirata, F.6
-
32
-
-
0029119131
-
The difference in affinity between two fungal cellulose- binding domains is dominated by a single amino acid substitution
-
Linder M, Lindeberg G, Reinikainen T, Teeri TT, Pettersson G (1995) The difference in affinity between two fungal cellulose- binding domains is dominated by a single amino acid substitution. FEBS Lett 372:96-98
-
(1995)
FEBS Lett
, vol.372
, pp. 96-98
-
-
Linder, M.1
Lindeberg, G.2
Reinikainen, T.3
Teeri, T.T.4
Pettersson, G.5
-
33
-
-
0343554779
-
Trichoderma reesei cellobiohydrolase I with an endoglucanase cellulose-binding domain: Action on bacterial microcrystalline cellulose
-
DOI 10.1016/S0168-1656(97)00088-6, PII S0168165697000886
-
Srisodsuk M, Lehtio J, Linder M, Margolles-Clark E, Reinikainen T, Teeri TT (1997) Trichoderma reesei cellobiohydrolase I with an endoglucanase cellulose-binding domain: action on bacterial microcrystalline cellulose. J Biotechnol 57:49-57 (Pubitemid 27397470)
-
(1997)
Journal of Biotechnology
, vol.57
, Issue.1-3
, pp. 49-57
-
-
Srisodsuk, M.1
Lehtio, J.2
Linder, M.3
Margolles-Clark, E.4
Reinikainen, T.5
Teeri, T.T.6
-
34
-
-
0037457955
-
The binding specificity and affinity determinants of family 1 and family 3 cellulose binding modules
-
DOI 10.1073/pnas.212651999
-
Lehtio J, Sugiyama J, Gustavsson M, Fransson L, Linder M, Teeri TT (2003) The binding specificity and affinity determinants of Family 1 and Family 3 cellulose binding modules. Proc Natl Acad Sci USA 100:484-489 (Pubitemid 36126077)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.2
, pp. 484-489
-
-
Lehtio, J.1
Sugiyama, J.2
Gustavsson, M.3
Fransson, L.4
Linder, M.5
Teeri, T.T.6
-
35
-
-
0040543046
-
When are free energy components meaningful?
-
Smith PE, van Gunsteren WF (1994) When are free energy components meaningful? J Phys Chem 98:13735-13740
-
(1994)
J Phys Chem
, vol.98
, pp. 13735-13740
-
-
Smith, P.E.1
Van Gunsteren, W.F.2
-
36
-
-
0028334097
-
Decomposition of the free energy of a system in terms of specific interactions. Implications for theoretical and experimental studies
-
Mark AE, van Gunsteren WF (1994) Decomposition of the free energy of a system in terms of specific interactions. Implications for theoretical and experimental studies. J Mol Biol 240:167-176
-
(1994)
J Mol Biol
, vol.240
, pp. 167-176
-
-
Mark, A.E.1
Van Gunsteren, W.F.2
-
37
-
-
0029584358
-
The meaning of component analysis: Decomposition of the free energy in terms of specific interactions
-
DOI 10.1006/jmbi.1995.0656
-
Boresch S, Karplus M (1995) The meaning of component analysis: decomposition of the free energy in terms of specific interactions. J Mol Biol 254:801-807 (Pubitemid 26006852)
-
(1995)
Journal of Molecular Biology
, vol.254
, Issue.5
, pp. 801-807
-
-
Boresch, S.1
Karplus, M.2
-
38
-
-
77955665196
-
MP2, density functional theory, and molecular mechanical calculations of C-H...pi and hydrogen bond interactions in a cellulose-binding module-cellulose model system
-
Mohamed MN, Watts HD, Guo J, Catchmark JM, Kubicki JD (2010) MP2, density functional theory, and molecular mechanical calculations of C-H...pi and hydrogen bond interactions in a cellulose-binding module-cellulose model system. Carbohydr Res 345:1741-1751
-
(2010)
Carbohydr Res
, vol.345
, pp. 1741-1751
-
-
Mohamed, M.N.1
Watts, H.D.2
Guo, J.3
Catchmark, J.M.4
Kubicki, J.D.5
-
39
-
-
36849067496
-
Correlation between cellulose binding and activity of cellulose-binding domain mutants of Humicola grisea cellobiohydrolase 1
-
DOI 10.1016/j.febslet.2007.11.068, PII S0014579307012227
-
Takashima S, Ohno M, Hidaka M, Nakamura A, Masaki H (2007) Correlation between cellulose binding and activity of cellulosebinding domain mutants of Humicola grisea cellobiohydrolase 1. FEBS Lett 581:5891-5896 (Pubitemid 50009359)
-
(2007)
FEBS Letters
, vol.581
, Issue.30
, pp. 5891-5896
-
-
Takashima, S.1
Ohno, M.2
Hidaka, M.3
Nakamura, A.4
Masaki, H.5
Uozumi, T.6
-
40
-
-
0027166270
-
Empirical scale of side-chain conformational entropy in protein folding
-
DOI 10.1006/jmbi.1993.1329
-
Pickett SD, Sternberg MJ (1993) Empirical scale of side-chain conformational entropy in protein folding. J Mol Biol 231:825-839 (Pubitemid 23211317)
-
(1993)
Journal of Molecular Biology
, vol.231
, Issue.3
, pp. 825-839
-
-
Pickett, S.D.1
Sternberg, M.J.E.2
|