-
2
-
-
0022988692
-
-
Schumacher, M.; Camp, S.; Maulet, Y.; Newton, M.; Macpheequigley, K.; Taylor, S. S.; Friedmann, T.; Taylor, P. Fed. Proc. 1986, 45, 2976-2981.
-
(1986)
Fed. Proc
, vol.45
, pp. 2976-2981
-
-
Schumacher, M.1
Camp, S.2
Maulet, Y.3
Newton, M.4
Macpheequigley, K.5
Taylor, S.S.6
Friedmann, T.7
Taylor, P.8
-
4
-
-
33645323789
-
-
Contestabile, A.; Fila, T.; Bartesaghi, R.; Contestabile, A.; Ciani, E. J. Neurochem. 2006, 97, 515-526.
-
(2006)
J. Neurochem
, vol.97
, pp. 515-526
-
-
Contestabile, A.1
Fila, T.2
Bartesaghi, R.3
Contestabile, A.4
Ciani, E.5
-
5
-
-
12444257779
-
-
Piazzi, L.; Rampa, A.; Bisi, A.; Gobbi, S.; Belluti, F.; Cavalli, A.; Bartolini, M.; Andrisano, V.; Valenti, P.; Recanatini, M. J. Med. Chem. 2003, 46, 2279-2282.
-
(2003)
J. Med. Chem
, vol.46
, pp. 2279-2282
-
-
Piazzi, L.1
Rampa, A.2
Bisi, A.3
Gobbi, S.4
Belluti, F.5
Cavalli, A.6
Bartolini, M.7
Andrisano, V.8
Valenti, P.9
Recanatini, M.10
-
7
-
-
0036660258
-
-
Sramek, J. J.; Zarotsky, V.; Cutler, N. R. Drug Dev. Res. 2002, 56, 347-353.
-
(2002)
Drug Dev. Res
, vol.56
, pp. 347-353
-
-
Sramek, J.J.1
Zarotsky, V.2
Cutler, N.R.3
-
8
-
-
0033103478
-
-
Kryger, G.; Silman, I.; Sussman, J. L. Struct. Fold. Des. 1999, 7, 297-307.
-
(1999)
Struct. Fold. Des
, vol.7
, pp. 297-307
-
-
Kryger, G.1
Silman, I.2
Sussman, J.L.3
-
10
-
-
0025778840
-
-
Sussman, J. L.; Harel, M.; Frolow, F.; Oefner, C.; Goldman, A.; Toker L.; Silman, I. Science 1991, 253, 872-879.
-
(1991)
Science
, vol.253
, pp. 872-879
-
-
Sussman, J.L.1
Harel, M.2
Frolow, F.3
Oefner, C.4
Goldman, A.5
Toker, L.6
Silman, I.7
-
11
-
-
0022493194
-
-
Bazelyansky, M.; Robey, E.; Kirsch, J. F. Biochemistry 1986, 25, 125-130.
-
(1986)
Biochemistry
, vol.25
, pp. 125-130
-
-
Bazelyansky, M.1
Robey, E.2
Kirsch, J.F.3
-
13
-
-
0019317512
-
-
Nolte, H. J.; Rosenberry, T. L.; Neumann, E. Biochemistry 1980, 19, 3705-3711.
-
(1980)
Biochemistry
, vol.19
, pp. 3705-3711
-
-
Nolte, H.J.1
Rosenberry, T.L.2
Neumann, E.3
-
14
-
-
34249017287
-
-
Amino acids and numbers refer to mouse or human AChE, and the numbers in parentheses refer to the positions of analogous residues in TcAChE
-
Amino acids and numbers refer to mouse or human AChE, and the numbers in parentheses refer to the positions of analogous residues in TcAChE.
-
-
-
-
15
-
-
0026733022
-
-
Shafferman, A.; Kronman, C.; Flashner, Y.; Leitner, M.; Grosfeld, H.; Ordentlich, A.; Gozes, Y.; Cohen, S.; Ariel, N.; Barak, D.; Harel, M.; Silman, I.; Sussman, J. L.; Velan, B. J. Biol. Chem. 1992, 267, 17640-17648.
-
(1992)
J. Biol. Chem
, vol.267
, pp. 17640-17648
-
-
Shafferman, A.1
Kronman, C.2
Flashner, Y.3
Leitner, M.4
Grosfeld, H.5
Ordentlich, A.6
Gozes, Y.7
Cohen, S.8
Ariel, N.9
Barak, D.10
Harel, M.11
Silman, I.12
Sussman, J.L.13
Velan, B.14
-
16
-
-
33845282579
-
-
Quinn, D. M. Chem. Rev. 1987, 87, 955-979.
-
(1987)
Chem. Rev
, vol.87
, pp. 955-979
-
-
Quinn, D.M.1
-
17
-
-
0037019547
-
-
Zhang, Y. K.; Kua, J.; McCammon, J. A. J. Am. Chem. Soc. 2002, 124, 10572-10577.
-
(2002)
J. Am. Chem. Soc
, vol.124
, pp. 10572-10577
-
-
Zhang, Y.K.1
Kua, J.2
McCammon, J.A.3
-
18
-
-
33644964044
-
-
Elsevier Science: Oxford, U.K
-
Quinn, D.; Medhekar, R.; Baker, N. Comprehensive Natural Products Chemistry: Enzymes, Enzyme Mechanisms, Proteins, and Aspects of NO Chemistry; Elsevier Science: Oxford, U.K., 1999.
-
(1999)
Comprehensive Natural Products Chemistry: Enzymes, Enzyme Mechanisms, Proteins, and Aspects of NO Chemistry
-
-
Quinn, D.1
Medhekar, R.2
Baker, N.3
-
20
-
-
0014689979
-
-
Blow, D. M.; Birktoft, J. J.; Hartley, B. S. Nature 1969, 221, 337-340.
-
(1969)
Nature
, vol.221
, pp. 337-340
-
-
Blow, D.M.1
Birktoft, J.J.2
Hartley, B.S.3
-
22
-
-
15844406817
-
-
Tachikawa, H.; Igarashi, M.; Nishihira, J.; Ishibashi, T. J. Photochem. Photobiol., B 2005, 79, 11-23.
-
(2005)
J. Photochem. Photobiol., B
, vol.79
, pp. 11-23
-
-
Tachikawa, H.1
Igarashi, M.2
Nishihira, J.3
Ishibashi, T.4
-
26
-
-
0028040716
-
-
Frey, P. A.; Whitt, S. A.; Tobin, J. B. Science 1994, 264, 1927-1930.
-
(1994)
Science
, vol.264
, pp. 1927-1930
-
-
Frey, P.A.1
Whitt, S.A.2
Tobin, J.B.3
-
27
-
-
0035873095
-
-
Massiah, M. A.; Viragh, C.; Reddy, P. M.; Kovach, I. M.; Johnson, J.; Rosenberry, T. L.; Mildvan, A. S. Biochemistry 2001, 40, 5682-5690.
-
(2001)
Biochemistry
, vol.40
, pp. 5682-5690
-
-
Massiah, M.A.1
Viragh, C.2
Reddy, P.M.3
Kovach, I.M.4
Johnson, J.5
Rosenberry, T.L.6
Mildvan, A.S.7
-
28
-
-
0942298096
-
-
Stranzl, G. R.; Gruber, K.; Steinkellner, G.; Zangger, K.; Schwab, H.; Kratky, C. J. Biol. Chem. 2004, 279, 3699-3707.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 3699-3707
-
-
Stranzl, G.R.1
Gruber, K.2
Steinkellner, G.3
Zangger, K.4
Schwab, H.5
Kratky, C.6
-
29
-
-
3543039982
-
-
Zhao, L.; Liao, H.; Tsai, M. D. J. Biol. Chem. 2004, 279, 31995-32000.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 31995-32000
-
-
Zhao, L.1
Liao, H.2
Tsai, M.D.3
-
30
-
-
0024538543
-
-
Warshel, A.; Narayszabo, G.; Sussman, F.; Hwang, J. K. Biochemistry 1989, 28, 3629-3637.
-
(1989)
Biochemistry
, vol.28
, pp. 3629-3637
-
-
Warshel, A.1
Narayszabo, G.2
Sussman, F.3
Hwang, J.K.4
-
32
-
-
0037077241
-
-
Katona, G.; Wilmouth, R. C.; Wright, P. A.; Berglund, G. I.; Hajdu, J.; Neutze, R.; Schofield, C. J. J. Biol. Chem. 2002, 277, 21962-21970.
-
(2002)
J. Biol. Chem
, vol.277
, pp. 21962-21970
-
-
Katona, G.1
Wilmouth, R.C.2
Wright, P.A.3
Berglund, G.I.4
Hajdu, J.5
Neutze, R.6
Schofield, C.J.7
-
33
-
-
2242428041
-
-
Topf, M.; Varnai, P.; Richards, W. G. J. Am. Chem. Soc. 2002, 124, 14780-14788.
-
(2002)
J. Am. Chem. Soc
, vol.124
, pp. 14780-14788
-
-
Topf, M.1
Varnai, P.2
Richards, W.G.3
-
35
-
-
28744457967
-
-
Shafferman, A.; Barak, D.; Kaplan, D.; Ordentlich, A.; Kronman, C.; Velan, B. Chem.-Biol. Interact. 2005, 157, 123-131.
-
(2005)
Chem.-Biol. Interact
, vol.157
, pp. 123-131
-
-
Shafferman, A.1
Barak, D.2
Kaplan, D.3
Ordentlich, A.4
Kronman, C.5
Velan, B.6
-
36
-
-
0036164239
-
-
Behra, M.; Cousin, X.; Bertrand, C.; Vonesch, J. L.; Biellmann, D.; Chatonnet, A.; Strahle, U. Nat. Neurosci. 2002, 5, 111-118.
-
(2002)
Nat. Neurosci
, vol.5
, pp. 111-118
-
-
Behra, M.1
Cousin, X.2
Bertrand, C.3
Vonesch, J.L.4
Biellmann, D.5
Chatonnet, A.6
Strahle, U.7
-
37
-
-
0030828982
-
-
Radić, Z.; Quinn, D. M.; McCammon, J. A.; Taylor, P. J. Biol. Chem. 1997, 272, 23265-23277.
-
(1997)
J. Biol. Chem
, vol.272
, pp. 23265-23277
-
-
Radić, Z.1
Quinn, D.M.2
McCammon, J.A.3
Taylor, P.4
-
39
-
-
33749402097
-
-
Bourne, Y.; Radić, Z.; Sulzenbacher, G.; Kim, E.; Taylor, P.; Marchot, P. J. Biol. Chem. 2006, 281, 29256-29267.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 29256-29267
-
-
Bourne, Y.1
Radić, Z.2
Sulzenbacher, G.3
Kim, E.4
Taylor, P.5
Marchot, P.6
-
40
-
-
34249112222
-
-
0, respectively; [X-Y] and [X-Y] represent the covalent and noncovalent complexes of the X enzyme and Y ligand, respectively.
-
0, respectively; [X-Y] and [X-Y] represent the covalent and noncovalent complexes of the X enzyme and Y ligand, respectively.
-
-
-
-
41
-
-
34249016657
-
-
InsightII, version 2000.1; Accelrys Software Inc, San Diego, CA, 2000
-
InsightII, version 2000.1; Accelrys Software Inc.: San Diego, CA, 2000.
-
-
-
-
43
-
-
0029011701
-
-
Cornell, W. D.; Cieplak, P.; Bayly, C. I.; Gould, I. R.; Merz, K. M.; Ferguson, D. M.; Spellmeyer, D. C.; Fox, T.; Caldwell, J. W.; Kollman, P. A. J. Am. Chem. Soc. 1995, 117, 5179-5197.
-
(1995)
J. Am. Chem. Soc
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz, K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
44
-
-
24044551391
-
-
University of California, San Francisco, CA
-
Case, D., et al. Amber 8.0; University of California, San Francisco, CA, 2004.
-
(2004)
Amber 8.0
-
-
Case, D.1
-
45
-
-
33646940952
-
-
Ryckaert, J. P.; Ciccotti, G.; Berendsen, H. J. C. J. Comput. Phys. 1977, 23, 327-341.
-
(1977)
J. Comput. Phys
, vol.23
, pp. 327-341
-
-
Ryckaert, J.P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
46
-
-
33846823909
-
-
Darden, T.; York, D.; Pedersen, L. J. Chem. Phys. 1993, 98, 10089-10092.
-
(1993)
J. Chem. Phys
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
47
-
-
0000145441
-
-
Zhang, Y. K.; Liu, H. Y.; Yang, W. T. J. Chem. Phys. 2000, 112, 3483-3492.
-
(2000)
J. Chem. Phys
, vol.112
, pp. 3483-3492
-
-
Zhang, Y.K.1
Liu, H.Y.2
Yang, W.T.3
-
48
-
-
0037125501
-
-
Kua, J.; Zhang, Y. K.; McCammon, J. A. J. Am. Chem. Soc. 2002, 124, 8260-8267.
-
(2002)
J. Am. Chem. Soc
, vol.124
, pp. 8260-8267
-
-
Kua, J.1
Zhang, Y.K.2
McCammon, J.A.3
-
49
-
-
11644261806
-
-
Morris, G. M.; Goodsell, D. S.; Halliday, R. S.; Huey, R.; Hart, W. E.; Belew, R. K.; Olson, A. J. J. Comput. Chem. 1998, 19, 1639-1662.
-
(1998)
J. Comput. Chem
, vol.19
, pp. 1639-1662
-
-
Morris, G.M.1
Goodsell, D.S.2
Halliday, R.S.3
Huey, R.4
Hart, W.E.5
Belew, R.K.6
Olson, A.J.7
-
50
-
-
0001582558
-
-
Zhang, Y. K.; Lee, T. S.; Yang, W. T. J. Chem. Phys. 1999, 110, 46-54.
-
(1999)
J. Chem. Phys
, vol.110
, pp. 46-54
-
-
Zhang, Y.K.1
Lee, T.S.2
Yang, W.T.3
-
51
-
-
0034686678
-
-
Liu, H. Y.; Zhang, Y. K.; Yang, W. T. J. Am. Chem. Soc. 2000, 122, 6560-6570.
-
(2000)
J. Am. Chem. Soc
, vol.122
, pp. 6560-6570
-
-
Liu, H.Y.1
Zhang, Y.K.2
Yang, W.T.3
-
52
-
-
2642570997
-
-
Cisneros, G. A.; Wang, M.; Silinski, P.; Fitzgerald, M. C.; Yang, W. T. Biochemistry 2004, 43, 6885-6892.
-
(2004)
Biochemistry
, vol.43
, pp. 6885-6892
-
-
Cisneros, G.A.1
Wang, M.2
Silinski, P.3
Fitzgerald, M.C.4
Yang, W.T.5
-
53
-
-
13444303958
-
-
Cheng, Y. H.; Zhang, Y. K.; McCammon, J. A. J. Am. Chem. Soc. 2005, 127, 1553-1562.
-
(2005)
J. Am. Chem. Soc
, vol.127
, pp. 1553-1562
-
-
Cheng, Y.H.1
Zhang, Y.K.2
McCammon, J.A.3
-
55
-
-
3142684303
-
Ab Initio QM/MM and Free Energy Calculations of Enzyme Reactions
-
Schlick, T, et al, Eds, Springer-Verlag: New York
-
Zhang, Y.; Liu, H.; Yang, W. Ab Initio QM/MM and Free Energy Calculations of Enzyme Reactions. In Methods for Macromolecular Modeling; Schlick, T., et al., Eds.; Springer-Verlag: New York, 2002.
-
(2002)
Methods for Macromolecular Modeling
-
-
Zhang, Y.1
Liu, H.2
Yang, W.3
-
56
-
-
0038016725
-
-
Zhang, Y. K.; Kua, J.; McCammon, J. A. J. Phys. Chem. B 2003, 107, 4459-4463.
-
(2003)
J. Phys. Chem. B
, vol.107
, pp. 4459-4463
-
-
Zhang, Y.K.1
Kua, J.2
McCammon, J.A.3
-
57
-
-
33645523760
-
-
Cheng, Y. H.; Zhang, Y. K.; McCammon, J. A. Protein Sci. 2006, 15, 672-683.
-
(2006)
Protein Sci
, vol.15
, pp. 672-683
-
-
Cheng, Y.H.1
Zhang, Y.K.2
McCammon, J.A.3
-
58
-
-
34249063279
-
-
Frisch, M. J., et al. Gaussian 98, revision A.5; Gaussian, Inc.: Pittsburgh, PA, 1998.
-
Frisch, M. J., et al. Gaussian 98, revision A.5; Gaussian, Inc.: Pittsburgh, PA, 1998.
-
-
-
-
59
-
-
34249001645
-
-
Ponder, J. W. TINKER, Software Tools for Molecular Design, version 3.6; The most updated version for the TINKER program can be obtained from J. W. Ponder's World Wide Web site at, February 1998
-
Ponder, J. W. TINKER, Software Tools for Molecular Design, version 3.6; The most updated version for the TINKER program can be obtained from J. W. Ponder's World Wide Web site at http://dasher.wustl.edu/tinker., February 1998.
-
-
-
-
60
-
-
0004016501
-
-
Jorgensen, W. L.; Chandrasekhar, J.; Madura, J. D.; Impey, R. W.; Klein, M. L. J. Chem. Phys. 1983, 79, 926-935.
-
(1983)
J. Chem. Phys
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
62
-
-
0242363173
-
Energetics of hydrogen bonds in peptides
-
Sheu, S. Y.; Yang, D. Y.; Selzle, H. L.; Schlag, E. W. Energetics of hydrogen bonds in peptides. Proc. Natl. Acad. Sci. U.S.A. 2003, 100 (22).
-
(2003)
Proc. Natl. Acad. Sci. U.S.A
, vol.100
, Issue.22
-
-
Sheu, S.Y.1
Yang, D.Y.2
Selzle, H.L.3
Schlag, E.W.4
-
63
-
-
0032584583
-
-
Ordentlich, A.; Barak, D.; Kronman, C.; Ariel, N.; Segall, Y.; Velan, B.; Shafferman, A. J. Biol. Chem. 1998, 273, 19509-19517.
-
(1998)
J. Biol. Chem
, vol.273
, pp. 19509-19517
-
-
Ordentlich, A.1
Barak, D.2
Kronman, C.3
Ariel, N.4
Segall, Y.5
Velan, B.6
Shafferman, A.7
-
64
-
-
4544387955
-
-
Stok, J. E.; Goloshchapov, A.; Song, C.; Wheelock, C. E.; Derbel, M. B. H.; Morisseau, C.; Hammock, B. D. Arch. Biochem. Biophys. 2004, 430, 247-255.
-
(2004)
Arch. Biochem. Biophys
, vol.430
, pp. 247-255
-
-
Stok, J.E.1
Goloshchapov, A.2
Song, C.3
Wheelock, C.E.4
Derbel, M.B.H.5
Morisseau, C.6
Hammock, B.D.7
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