-
1
-
-
44249092708
-
Identifying and interpreting spectral features of DNA in the microwave-submillimeter range
-
Adenine, New York
-
Van Zandt L, Saxena V (1992) Identifying and interpreting spectral features of DNA in the microwave-submillimeter range. In: Structure and function. Adenine, New York, p 237
-
(1992)
Structure and Function
, pp. 237
-
-
Van Zandt, L.1
Saxena, V.2
-
2
-
-
0000213488
-
Calculation and analysis of low frequency normal modes for DNA
-
Duong TH, Zakrzewska K (1997) Calculation and analysis of low frequency normal modes for DNA. J Comput Chem 18:796-811 (Pubitemid 127560726)
-
(1997)
Journal of Computational Chemistry
, vol.18
, Issue.6
, pp. 796-811
-
-
Duong, T.H.1
Zakrzewska, K.2
-
3
-
-
0034821115
-
The interaction between Terahertz radiation and biological tissue
-
DOI 10.1088/0031-9155/46/9/201, PII S003191550123958X
-
Smye SW, Chamberlain JM, Fitzgerald AJ, Berry E (2001) The interaction between terahertz radiation and biological tissue. Phys Med Biol 46:R101-R112 (Pubitemid 32895526)
-
(2001)
Physics in Medicine and Biology
, vol.46
, Issue.9
-
-
Smye, S.W.1
Chamberlain, J.M.2
Fitzgerald, A.J.3
Berry, E.4
-
4
-
-
57449110776
-
Terahertz absorption of DNA decamer duplex
-
Li X, Globus T, Gelmont B, Salay LC, Bykhovski A (2008) Terahertz absorption of DNA decamer duplex. J Phys Chem A 112:12090-12096
-
(2008)
J Phys Chem A
, vol.112
, pp. 12090-12096
-
-
Li, X.1
Globus, T.2
Gelmont, B.3
Salay, L.C.4
Bykhovski, A.5
-
5
-
-
0038613589
-
Submillimetre wave absorption spectra of artificial RNA molecules
-
Globus T, Bykhovskaia M, Woolard D, Gelmont B (2003) Submillimetre wave absorption spectra of artificial RNA molecules. J Phys D 36:1314-1322
-
(2003)
J Phys D
, vol.36
, pp. 1314-1322
-
-
Globus, T.1
Bykhovskaia, M.2
Woolard, D.3
Gelmont, B.4
-
6
-
-
33747697095
-
An analysis of the THz frequency signatures in the cellular components of biological agents
-
Orlando, FL, USA, 17-21 April 2006 pp V6212-8
-
Bykhovski A, Globus T, Gelmont B, Woolard D (2006) An analysis of the THz frequency signatures in the cellular components of biological agents. In: Proc SPIE Defense Security Symp, Orlando, FL, USA, 17-21 April 2006, pp V 6212-8, pp 132-141
-
(2006)
Proc SPIE Defense Security Symp
, pp. 132-141
-
-
Bykhovski, A.1
Globus, T.2
Gelmont, B.3
Woolard, D.4
-
7
-
-
33644629541
-
THz absorption signature detection of genetic material of E. coli and B. subtilis
-
Boston, MA, USA, 24 Oct 2005
-
Bykhovski A, Xiaowei L, Globus T, Gelmont B, Woolard D, Samuels AC, Jensen JO (2005) THz absorption signature detection of genetic material of E. coli and B. subtilis. In: Proc SPIE Chem Biol Standoff Detection III, Boston, MA, USA, 24 Oct 2005, pp 59950N-59950N-10
-
(2005)
Proc SPIE Chem Biol Standoff Detection III
-
-
Bykhovski, A.1
Xiaowei, L.2
Globus, T.3
Gelmont, B.4
Woolard, D.5
Samuels, A.C.6
Jensen, J.O.7
-
8
-
-
30344440627
-
-
University of California, San Francisco
-
Case DA, Pearlman DA, Caldwell JW, Cheatham TE III, Wang J, RossWS, Simmerling CL, Darden TA,Merz KM, Stanton RV, Cheng AL, Vincent JJ, Crowley M, Tsui V, Gohlke H, Radmer RJ, Duan Y, Pitera J, Massova I, Seibel GL, Singh UC, Weiner PK, Kollman PA (2004) AMBER 8. University of California, San Francisco
-
(2004)
AMBER
, vol.8
-
-
Case, D.A.1
Pearlman, D.A.2
Caldwell, J.W.3
Cheatham Iii, T.E.4
Wang, J.5
Ross, W.S.6
Simmerling, C.L.7
Darden, T.A.8
Merz, K.M.9
Stanton, R.V.10
Cheng, A.L.11
Vincent, J.J.12
Crowley, M.13
Tsui, V.14
Gohlke, H.15
Radmer, R.J.16
Duan, Y.17
Pitera, J.18
Massova, I.19
Seibel, G.L.20
Singh, U.C.21
Weiner, P.K.22
Kollman, P.A.23
more..
-
9
-
-
30344440627
-
-
University of California, San Francisco
-
Case DA, Darden TA, Cheatham TE III, Simmerling CL, Wang J, Duke RE, Luo R, Crowley M, Ross WS, Zhang W, Merz KM, Wang B, Hayik S, Roitberg A, Seabra G, Kolossváry I, Wong KF, Paesani F, Vanicek J, Wu X, Brozell SR, Steinbrecher T, Gohlke H, Yang L, Tan C, Mongan J, Hornak V, Cui G, Mathews DH, Seetin MG, Sagui C, Babin V, Kollman PA (2008) AMBER 10. University of California, San Francisco
-
(2008)
AMBER
, vol.10
-
-
Case, D.A.1
Darden, T.A.2
Cheatham Iii, T.E.3
Simmerling, C.L.4
Wang, J.5
Duke, R.E.6
Luo, R.7
Crowley, M.8
Ross, W.S.9
Zhang, W.10
Merz, K.M.11
Wang, B.12
Hayik, S.13
Roitberg, A.14
Seabra, G.15
Kolossváry, I.16
Wong, K.F.17
Paesani, F.18
Vanicek, J.19
Wu, X.20
Brozell, S.R.21
Steinbrecher, T.22
Gohlke, H.23
Yang, L.24
Tan, C.25
Mongan, J.26
Hornak, V.27
Cui, G.28
Mathews, D.H.29
Seetin, M.G.30
Sagui, C.31
Babin, V.32
Kollman, P.A.33
more..
-
10
-
-
77956638184
-
Resonant terahertz spectroscopy of bacterial thioredoxin in water: Simulation and experiment
-
Woolard D, Jensen J (eds). World Scientific, Singapore
-
Bykhovski A, Globus T, Khromova T, Gelmont B, Woolard D (2008) Resonant terahertz spectroscopy of bacterial thioredoxin in water: simulation and experiment. In: Woolard D, Jensen J (eds) Spectral sensing research for water monitoring applications and frontier science and technology for chemical, biological and radiological defense (Selected Topics in Electronics and Systems 48). World Scientific, Singapore, pp 367-375
-
(2008)
Spectral Sensing Research for Water Monitoring Applications and Frontier Science and Technology for Chemical, Biological and Radiological Defense (Selected Topics in Electronics and Systems 48)
, pp. 367-375
-
-
Bykhovski, A.1
Globus, T.2
Khromova, T.3
Gelmont, B.4
Woolard, D.5
-
11
-
-
33746433518
-
Terahertz Fourier transform characterization of biological materials in a liquid phase
-
DOI 10.1088/0022-3727/39/15/028, PII S0022372706087286, 028
-
Globus T, Woolard D, Crowe TW, Khromova T, Gelmont B, Hesler J (2006) Terahertz Fourier transform characterization of biological materials in a liquid phase. J Phys D 39:3405-3413 (Pubitemid 44121248)
-
(2006)
Journal of Physics D: Applied Physics
, vol.39
, Issue.15
, pp. 3405-3413
-
-
Globus, T.1
Woolard, D.2
Crowe, T.W.3
Khromova, T.4
Gelmont, B.5
Hesler, J.6
-
12
-
-
0025319619
-
Crystal structure of thioredoxin from Escherichia coli at 1.68 A resolution
-
Katti SK, LeMaster DM, Eklund H (1990) Crystal structure of thioredoxin from Escherichia coli at 1.68 A resolution. J Mol Biol 212:167-184
-
(1990)
J Mol Biol
, vol.212
, pp. 167-184
-
-
Katti, S.K.1
Lemaster, D.M.2
Eklund, H.3
-
13
-
-
0242663237
-
A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations
-
Duan Y, Wu C, Chowdhury S, Lee MC, Xiong G, Zhang W, Yang R, Cieplak P, Luo R, Lee T, Caldwell J, Wang J, Kollman P (2003) A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations. J Comput Chem 24:1999-2012
-
(2003)
J Comput Chem
, vol.24
, pp. 1999-2012
-
-
Duan, Y.1
Wu, C.2
Chowdhury, S.3
Lee, M.C.4
Xiong, G.5
Zhang, W.6
Yang, R.7
Cieplak, P.8
Luo, R.9
Lee, T.10
Caldwell, J.11
Wang, J.12
Kollman, P.13
-
14
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen WL, Chandrasekhar J, Madura JD, Impey RW, Klein ML (1983) Comparison of simple potential functions for simulating liquid water. J Chem Phys 79:926
-
(1983)
J Chem Phys
, vol.79
, pp. 926
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
16
-
-
59049086198
-
THz investigations of condensed phase biomolecular systems
-
Zhang H, Siegrist K, Douglas KO, Gregurick SK, Plusquellic DF (2008) THz investigations of condensed phase biomolecular systems. Methods Cell Biol 90:417-434
-
(2008)
Methods Cell Biol
, vol.90
, pp. 417-434
-
-
Zhang, H.1
Siegrist, K.2
Douglas, K.O.3
Gregurick, S.K.4
Plusquellic, D.F.5
-
17
-
-
1642431820
-
Continuous-wave terahertz spectroscopy of biotin: Vibrational anharmonicity in the farinfrared
-
Korter TM, Plusquellic DF (2004) Continuous-wave terahertz spectroscopy of biotin: vibrational anharmonicity in the farinfrared. Chem Phys Lett 385:45-51
-
(2004)
Chem Phys Lett
, vol.385
, pp. 45-51
-
-
Korter, T.M.1
Plusquellic, D.F.2
-
18
-
-
22444438784
-
Langevin model of the temperature and hydration dependence of protein vibrational dynamics
-
DOI 10.1021/jp044272q
-
Moritsugu K, Smith JC (2005) Langevin model of the temperature and hydration dependence of protein vibrational dynamics. J Phys Chem B 109:12182-12194 (Pubitemid 41005982)
-
(2005)
Journal of Physical Chemistry B
, vol.109
, Issue.24
, pp. 12182-12194
-
-
Moritsugu, K.1
Smith, J.C.2
-
19
-
-
84861232001
-
Physical and functional aspects of protein dynamics
-
Poon WCK, Andelman D (eds) Taylor & Francis, New York
-
Smith J, Becker T, Fischer S, Noé F, Tournier A, Ullmann G, Kurkal V (2006) Physical and functional aspects of protein dynamics. In: Poon WCK, Andelman D (eds) Soft condensed matter physics in molecular and cell biology. Taylor & Francis, New York, pp 225-241
-
(2006)
Soft Condensed Matter Physics in Molecular and Cell Biology
, pp. 225-241
-
-
Smith, J.1
Becker, T.2
Fischer, S.3
Noé, F.4
Tournier, A.5
Ullmann, G.6
Kurkal, V.7
-
20
-
-
79958833117
-
Dielectric spectroscopy of proteins as a quantitative experimental test of computational models of their low-frequency harmonic motions
-
Vinh NQ, Allen SJ, Plaxco KW (2011) Dielectric spectroscopy of proteins as a quantitative experimental test of computational models of their low-frequency harmonic motions. J Am Chem Soc 133:8942-8947
-
(2011)
J Am Chem Soc
, vol.133
, pp. 8942-8947
-
-
Vinh, N.Q.1
Allen, S.J.2
Plaxco, K.W.3
-
21
-
-
0025333959
-
Temperature dependence of the low frequency dynamics of myoglobin. Measurement of the vibrational frequency distribution by inelastic neutron scattering
-
Cusack S, Doster W (1990) Temperature dependence of the low frequency dynamics of myoglobin. Measurement of the vibrational frequency distribution by inelastic neutron scattering. Biophys J 58:243-251 (Pubitemid 20237952)
-
(1990)
Biophysical Journal
, vol.58
, Issue.1
, pp. 243-251
-
-
Cusack, S.1
Doster, W.2
-
22
-
-
77954715967
-
Ferroelectric hydration shells around proteins: Electrostatics of the protein-water interface
-
LeBard DN, Matyushov DV (2010) Ferroelectric hydration shells around proteins: electrostatics of the protein-water interface. J Phys Chem B 114:9246-9258
-
(2010)
J Phys Chem B
, vol.114
, pp. 9246-9258
-
-
Lebard, D.N.1
Matyushov, D.V.2
-
23
-
-
33751534910
-
Conformational heterogeneity and low-frequency vibrational modes of proteins
-
Balog E, Smith JC, Perahia D (2006) Conformational heterogeneity and low-frequency vibrational modes of proteins. Phys Chem Chem Phys 8:5543-5548
-
(2006)
Phys Chem Chem Phys
, vol.8
, pp. 5543-5548
-
-
Balog, E.1
Smith, J.C.2
Perahia, D.3
-
24
-
-
0035957014
-
The role of structure, energy landscape, dynamics, and allostery in the enzymatic function of myoglobin
-
DOI 10.1073/pnas.041614298
-
Frauenfelder H, McMahon BH, Austin RH, Chu K, Groves JT (2001) The role of structure, energy landscape, dynamics, and allostery in the enzymatic function of myoglobin. Proc Natl Acad Sci USA 98:2370-2374 (Pubitemid 32209489)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.5
, pp. 2370-2374
-
-
Frauenfelder, H.1
McMahon, B.H.2
Austin, R.H.3
Chu, K.4
Groves, J.T.5
-
25
-
-
0036725277
-
Molecular dynamics simulations of biomolecules
-
DOI 10.1038/nsb0902-646
-
Karplus M,McCammon JA (2002) Molecular dynamics simulations of biomolecules. Nat Struct Biol 9:646-652 (Pubitemid 34977295)
-
(2002)
Nature Structural Biology
, vol.9
, Issue.9
, pp. 646-652
-
-
Karplus, M.1
McCammon, J.A.2
-
26
-
-
0030256107
-
Molecular dynamics simulations of peptides from BPTI: A closer look at amide-aromatic interactions
-
van der Spoel D, van Buuren AR, Tieleman DP, BerendsenHJ (1996) Molecular dynamics simulations of peptides from BPTI: a closer look at amide-aromatic interactions. J Biomol NMR 8:229-238 (Pubitemid 126707862)
-
(1996)
Journal of Biomolecular NMR
, vol.8
, Issue.3
, pp. 229-238
-
-
Van Der Spoel, D.1
Van Buuren, A.R.2
Tieleman, D.P.3
Berendsen, H.J.C.4
-
27
-
-
34250318638
-
Refinement of the AMBER force field for nucleic acids: Improving the description of α/γ conformers
-
DOI 10.1529/biophysj.106.097782
-
Pérez A, Marchán I, Svozil D, Sponer J, Cheatham TE III, Laughton CA, Orozco M (2007) Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformers. Biophys J 92:3817-3829 (Pubitemid 46910569)
-
(2007)
Biophysical Journal
, vol.92
, Issue.11
, pp. 3817-3829
-
-
Perez, A.1
Marchan, I.2
Svozil, D.3
Sponer, J.4
Cheatham III, T.E.5
Laughton, C.A.6
Orozco, M.7
-
28
-
-
0034036078
-
Nucleic acids: Theory and computer simulation, Y2K
-
DOI 10.1016/S0959-440X(00)00076-2
-
Beveridge DL, McConnell KJ (2000) Nucleic acids: theory and computer simulation, Y2K. Curr Opin Struct Biol 10:182-196 (Pubitemid 30198945)
-
(2000)
Current Opinion in Structural Biology
, vol.10
, Issue.2
, pp. 182-196
-
-
Beveridge, D.L.1
McConnell, K.J.2
-
29
-
-
0000020246
-
A five-site model for liquid water and the reproduction of the density anomaly by rigid, nonpolarizable potential functions
-
Mahoney MW, Jorgensen WL (2000) A five-site model for liquid water and the reproduction of the density anomaly by rigid, nonpolarizable potential functions. J Chem Phys 112:8910
-
(2000)
J Chem Phys
, vol.112
, pp. 8910
-
-
Mahoney, M.W.1
Jorgensen, W.L.2
-
30
-
-
33745202841
-
Optimization and computational evaluation of a series of potential active site inhibitors of the V82F/I84V drug-resistant mutant of HIV-1 protease: An application of the relaxed complex method of structure-based drug design
-
Perryman AL, Lin JH, Andrew McCammon J (2006) Optimization and computational evaluation of a series of potential active site inhibitors of the V82F/I84V drug-resistant mutant of HIV-1 protease: an application of the relaxed complex method of structure-based drug design. Chem Biol Drug Des 67:336-345
-
(2006)
Chem Biol Drug des
, vol.67
, pp. 336-345
-
-
Perryman, A.L.1
Lin, J.H.2
Andrew McCammon, J.3
-
31
-
-
27344455346
-
Reproducible polypeptide folding and structure prediction using molecular dynamics simulations
-
DOI 10.1016/j.jmb.2005.09.030, PII S0022283605010958
-
Seibert MM, Patriksson A, Hess B, van der Spoel D (2005) Reproducible polypeptide folding and structure prediction using molecular dynamics simulations. J Mol Biol 354:173-183 (Pubitemid 41527222)
-
(2005)
Journal of Molecular Biology
, vol.354
, Issue.1
, pp. 173-183
-
-
Seibert, M.M.1
Patriksson, A.2
Hess, B.3
Van Der Spoel, D.4
-
32
-
-
28844490605
-
A statistical approach to the interpretation of molecular dynamics simulations of calmodulin equilibrium dynamics
-
DOI 10.1110/ps.051681605
-
Likić VA, Gooley PR, Speed TP, Strehler EE (2005) A statistical approach to the interpretation of molecular dynamics simulations of calmodulin equilibrium dynamics. Protein Sci 14:2955-2963 (Pubitemid 41770136)
-
(2005)
Protein Science
, vol.14
, Issue.12
, pp. 2955-2963
-
-
Likic, V.A.1
Gooley, P.R.2
Speed, T.P.3
Strehler, E.E.4
-
33
-
-
0027366431
-
How consistent are molecular dynamics simulations? Comparing structure and dynamic in reduced and oxidized Escherichia coli thioredoxin
-
DOI 10.1006/jmbi.1993.1551
-
Elofsson A, Nilsson L (1993) How consistent are molecular dynamics simulations? Comparing structure and dynamics in reduced and oxidized Escherichia coli thioredoxin. J Mol Biol 233:766-780 (Pubitemid 23314785)
-
(1993)
Journal of Molecular Biology
, vol.233
, Issue.4
, pp. 766-780
-
-
Elofsson, A.1
Nilsson, L.2
-
34
-
-
0028869415
-
Multiple molecular dynamics simulations of the anticodon loop of tRNA[Asp] in aqueous solution with counterions
-
Auffinger P, Louise-May S, Westhof E (1995) Multiple molecular dynamics simulations of the anticodon loop of tRNA[Asp] in aqueous solution with counterions. J Am Chem Soc 117:6720-6726
-
(1995)
J Am Chem Soc
, vol.117
, pp. 6720-6726
-
-
Auffinger, P.1
Louise-May, S.2
Westhof, E.3
-
35
-
-
0035314045
-
Dynamics of internal water in fatty acid binding protein: Computer simulations and comparison with experiments
-
DOI 10.1002/1097-0134(20010401)43:1<65::AID-PROT1018>3.0.CO;2-F
-
Likić VA, Prendergast FG (2001) Dynamics of internal water in fatty acid binding protein: computer simulations and comparison with experiments. Proteins 43:65-72 (Pubitemid 32194908)
-
(2001)
Proteins: Structure, Function and Genetics
, vol.43
, Issue.1
, pp. 65-72
-
-
Likic, V.A.1
Prendergast, F.G.2
-
36
-
-
0027972206
-
Dynamics in rugged energy landscapes with applications to the S-peptide and ribonuclease A
-
Straub JE, Rashkin AB, Thirumalai D (1994) Dynamics in rugged energy landscapes with applications to the S-peptide and ribonuclease A. J Am Chem Soc 116:2049-2063
-
(1994)
J Am Chem Soc
, vol.116
, pp. 2049-2063
-
-
Straub, J.E.1
Rashkin, A.B.2
Thirumalai, D.3
-
37
-
-
0031910020
-
Locally accessible conformations of proteins: Multiple molecular dynamics simulations of crambin
-
Caves LS, Evanseck JD, Karplus M (1998) Locally accessible conformations of proteins: multiple molecular dynamics simulations of crambin. Protein Sci 7:649-666 (Pubitemid 28130887)
-
(1998)
Protein Science
, vol.7
, Issue.3
, pp. 649-666
-
-
Caves, L.S.D.1
Evanseck, J.D.2
Karplus, M.3
-
38
-
-
41349089279
-
Convergence of sampling in protein simulations
-
Hess B (2002) Convergence of sampling in protein simulations. Phys Rev E 65(3 Pt 1):031910
-
(2002)
Phys Rev e
, vol.65
, Issue.3 PART 1
, pp. 031910
-
-
Hess, B.1
-
39
-
-
0026684043
-
A 500 ps molecular dynamics simulation study of interleukin- 1[beta] in water: Correlation with nuclear magnetic resonance spectroscopy and crystallography
-
Chandrasekhar I, Clore GM, Szabo A, Gronenborn AM, Brooks BR (1992) A 500 ps molecular dynamics simulation study of interleukin- 1[beta] in water: correlation with nuclear magnetic resonance spectroscopy and crystallography. J Mol Biol 226:239-250
-
(1992)
J Mol Biol
, vol.226
, pp. 239-250
-
-
Chandrasekhar, I.1
Clore, G.M.2
Szabo, A.3
Gronenborn, A.M.4
Brooks, B.R.5
-
40
-
-
0001295503
-
Principal component analysis and long time protein dynamics
-
Balsera MA, Wriggers W, Oono Y, Schulten K (1996) Principal component analysis and long time protein dynamics. J Phys Chem 100:2567-2572 (Pubitemid 126793208)
-
(1996)
Journal of Physical Chemistry
, vol.100
, Issue.7
, pp. 2567-2572
-
-
Balsera, M.A.1
Wriggers, W.2
Oono, Y.3
Schulten, K.4
-
41
-
-
0028912595
-
A sampling problem in molecular dynamics simulations of macromolecules
-
Clarage JB, Romo T, Andrews BK, Pettitt BM, Phillips GN Jr (1995) A sampling problem in molecular dynamics simulations of macromolecules. Proc Natl Acad Sci USA 92:3288-3292
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 3288-3292
-
-
Clarage, J.B.1
Romo, T.2
Andrews, B.K.3
Pettitt, B.M.4
Phillips Jr., G.N.5
-
42
-
-
0032802062
-
On the convergence of the conformational coordinates basis set obtained by the Essential Dynamics analysis of proteins' molecular dynamics simulations
-
DOI 10.1002/(SICI)1097-0134(19990901)36:4<419::AID-PROT5>3.0.CO;2-U
-
Amadei A, Ceruso MA, Di Nola A (1999) On the convergence of the conformational coordinates basis set obtained by the essential dynamics analysis of proteins' molecular dynamics simulations. Proteins 36:419-424 (Pubitemid 29387740)
-
(1999)
Proteins: Structure, Function and Genetics
, vol.36
, Issue.4
, pp. 419-424
-
-
Amadei, A.1
Ceruso, M.A.2
Di Nola, A.3
-
43
-
-
0034033187
-
Long timescale simulations
-
DOI 10.1016/S0959-440X(00)00062-2
-
Daggett V (2000) Long timescale simulations. Curr Opin Struct Biol 10:160-164 (Pubitemid 30198941)
-
(2000)
Current Opinion in Structural Biology
, vol.10
, Issue.2
, pp. 160-164
-
-
Daggett, V.1
-
44
-
-
34248330944
-
Dissection of complex protein dynamics in human thioredoxin
-
DOI 10.1073/pnas.0608498104
-
Qiu W, Wang L, Lu W, Boechler A, Sanders DAR, Zhong D (2007) Dissection of complex protein dynamics in human thioredoxin. Proc Natl Acad Sci USA 104:5366-5371 (Pubitemid 47175686)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.13
, pp. 5366-5371
-
-
Qiu, W.1
Wang, L.2
Lu, W.3
Boechler, A.4
Sanders, D.A.R.5
Zhong, D.6
-
45
-
-
33947425139
-
Hydration dynamics and time scales of coupled water-protein fluctuations
-
DOI 10.1021/ja0685957
-
Li T, Hassanali AA, Kao YT, Zhong D, Singer SJ (2007) Hydration dynamics and time scales of coupled water-protein fluctuations. J Am Chem Soc 129:3376-3382 (Pubitemid 46449368)
-
(2007)
Journal of the American Chemical Society
, vol.129
, Issue.11
, pp. 3376-3382
-
-
Li, T.1
Hassanali, A.A.2
Kao, Y.-T.3
Zhong, D.4
Singer, S.J.5
-
47
-
-
42449114072
-
Low-terahertz spectroscopy of liquid water
-
Boston, MA, USA, 11 Sept 2007
-
Globus T, Bykhovski A, Khromova T, Gelmont B, Tamm LK, Salay LC (2007) Low-terahertz spectroscopy of liquid water. In: Proc SPIE Terahertz Phys Devices Syst II, Boston, MA, USA, 11 Sept 2007, 67720S
-
(2007)
Proc SPIE Terahertz Phys Devices Syst II
-
-
Globus, T.1
Bykhovski, A.2
Khromova, T.3
Gelmont, B.4
Tamm, L.K.5
Salay, L.C.6
-
49
-
-
33846823909
-
Particle mesh Ewald: An N?log(N) method for Ewald sums in large systems
-
Darden T, York D, Pedersen L (1993) Particle mesh Ewald: an N?log(N) method for Ewald sums in large systems. J Chem Phys 98:10089-10092
-
(1993)
J Chem Phys
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
50
-
-
33645961739
-
A smooth particle mesh Ewald method
-
Essmann U, Perera L, Berkowitz M, Darden T, Lee H, Pedersen L (1995) A smooth particle mesh Ewald method. J Chem Phys 103:8577-8593
-
(1995)
J Chem Phys
, vol.103
, pp. 8577-8593
-
-
Essmann, U.1
Perera, L.2
Berkowitz, M.3
Darden, T.4
Lee, H.5
Pedersen, L.6
-
51
-
-
33646940952
-
Numerical integration of the Cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
-
Ryckaert J, Ciccotti G, Berendsen H (1977) Numerical integration of the Cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J Comput Phys 23:327-341
-
(1977)
J Comput Phys
, vol.23
, pp. 327-341
-
-
Ryckaert, J.1
Ciccotti, G.2
Berendsen, H.3
-
52
-
-
0000127140
-
Method for estimating the configurational entropy of macromolecules
-
Karplus M, Kushick JN (1981) Method for estimating the configurational entropy of macromolecules. Macromolecules 14:325-332
-
(1981)
Macromolecules
, vol.14
, pp. 325-332
-
-
Karplus, M.1
Kushick, J.N.2
-
53
-
-
0000961995
-
Evaluation of the configurational entropy for proteins: Application to molecular dynamics simulations of an α-helix
-
Levy RM, KarplusM, Kushick J, Perahia D (1984) Evaluation of the configurational entropy for proteins: application to molecular dynamics simulations of an α-helix. Macromolecules 17:1370-1374
-
(1984)
Macromolecules
, vol.17
, pp. 1370-1374
-
-
Levy, R.M.1
Karplus, M.2
Kushick, J.3
Perahia, D.4
-
54
-
-
1542502666
-
THz-frequency spectroscopic sensing of DNA and related biological materials
-
Globus T, Woolard D, Bykhovskaia M, Gelmont B, Werbos L, Samuels AC (2003) THz-frequency spectroscopic sensing of DNA and related biological materials. IJHSES 13:903-936
-
(2003)
IJHSES
, vol.13
, pp. 903-936
-
-
Globus, T.1
Woolard, D.2
Bykhovskaia, M.3
Gelmont, B.4
Werbos, L.5
Samuels, A.C.6
-
55
-
-
71549120410
-
Electronic polarization is important in stabilizing the native structures of proteins
-
Ji CG, Zhang JZH (2009) Electronic polarization is important in stabilizing the native structures of proteins. J Phys Chem B 113:16059-16064
-
(2009)
J Phys Chem B
, vol.113
, pp. 16059-16064
-
-
Ji, C.G.1
Zhang, J.Z.H.2
-
56
-
-
34547298869
-
Can a physics-based, all-atom potential find a protein's native structure among misfolded structures? I. Large scale AMBER benchmarking
-
DOI 10.1002/jcc.20720
-
Wroblewska L, Skolnick J (2007) Can a physics-based, all-atom potential find a protein's native structure among misfolded structures? I. Large scale AMBER benchmarking. J Comput Chem 28:2059-2066 (Pubitemid 47153603)
-
(2007)
Journal of Computational Chemistry
, vol.28
, Issue.12
, pp. 2059-2066
-
-
Wroblewska, L.1
Skolnick, J.2
|