-
2
-
-
0029985860
-
An efficient method for sampling the essential subspace of proteins
-
Amadei A, Linssen ABM, De Groot BL, Van Aalten DMF, Berendsen HJC. An efficient method for sampling the essential subspace of proteins. J Biomol Struct Dyn 1996;13:615-626.
-
(1996)
J Biomol Struct Dyn
, vol.13
, pp. 615-626
-
-
Amadei, A.1
Linssen, A.B.M.2
De Groot, B.L.3
Van Aalten, D.M.F.4
Berendsen, H.J.C.5
-
3
-
-
0029811307
-
An extended sampling of the configurational space of HPr from E. Coli
-
De Groot BL, Amadei A, Scheek RM, Van Nuland NAJ, Berendsen HJC. An extended sampling of the configurational space of HPr from E. coli. Proteins 1996;26:314-322.
-
(1996)
Proteins
, vol.26
, pp. 314-322
-
-
De Groot, B.L.1
Amadei, A.2
Scheek, R.M.3
Van Nuland, N.A.J.4
Berendsen, H.J.C.5
-
4
-
-
0029818017
-
The consistency of large concerted motions in proteins in molecular dynamics simulations
-
De Groot BL, Van Aalten DMF, Amadei A, Berendsen HJC. The consistency of large concerted motions in proteins in molecular dynamics simulations. Biophys J 1996;71:1554-1566.
-
(1996)
Biophys J
, vol.71
, pp. 1554-1566
-
-
De Groot, B.L.1
Van Aalten, D.M.F.2
Amadei, A.3
Berendsen, H.J.C.4
-
5
-
-
0001016372
-
A comparison of techniques for calculating protein essential dynamics
-
Van Aalten DMF, De Groot BL, Berendsen HJC, Findlay JBC, Amadei A. A comparison of techniques for calculating protein essential dynamics. J Comp Chem 1997;18:169-181.
-
(1997)
J Comp Chem
, vol.18
, pp. 169-181
-
-
Van Aalten, D.M.F.1
De Groot, B.L.2
Berendsen, H.J.C.3
Findlay, J.B.C.4
Amadei, A.5
-
6
-
-
0028912595
-
A sampling problem in molecular dynamics simulations of macromolecules
-
Clarage J, Romo T, Andrews BK, Montgomery B, Phillips GN. A sampling problem in molecular dynamics simulations of macromolecules. Proc Natl Acad Sci USA 1995;92:3288-3292.
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 3288-3292
-
-
Clarage, J.1
Romo, T.2
Andrews, B.K.3
Montgomery, B.4
Phillips, G.N.5
-
7
-
-
0029092698
-
Fluctuations and cross-correlation analysis of protein motions observed in nanosecond molecular dynamics simulations
-
Hunenberger PH, Mark AE, Van Gunsteren WF. Fluctuations and cross-correlation analysis of protein motions observed in nanosecond molecular dynamics simulations. J Mol Biol 1995;252:492-503.
-
(1995)
J Mol Biol
, vol.252
, pp. 492-503
-
-
Hunenberger, P.H.1
Mark, A.E.2
Van Gunsteren, W.F.3
-
8
-
-
0028109545
-
Three-dimensional structure of an immunoglobulin light chain-binding domain of protein L. Comparison with the IgG-binding domains of protein G
-
Wikstrom M, Drakenberg T, Forsen S, Sjobring U, Bjorch L. Three-dimensional structure of an immunoglobulin light chain-binding domain of protein L. Comparison with the IgG-binding domains of protein G. Biochemistry 1994;33:14011-14017.
-
(1994)
Biochemistry
, vol.33
, pp. 14011-14017
-
-
Wikstrom, M.1
Drakenberg, T.2
Forsen, S.3
Sjobring, U.4
Bjorch, L.5
-
9
-
-
0020004138
-
Structure of cytochrome C551 from P. Aeruginosa refined at 1.6 Å resolution and comparison of the two redox forms
-
Matsuura Y, Takano T, Dickerson RE. Structure of cytochrome C551 from P. aeruginosa refined at 1.6 Å resolution and comparison of the two redox forms. J Mol Biol 1982;156:389-405.
-
(1982)
J Mol Biol
, vol.156
, pp. 389-405
-
-
Matsuura, Y.1
Takano, T.2
Dickerson, R.E.3
-
11
-
-
0004146515
-
Gromos manual
-
Laboratory of Physical Chemistry, University of Groningen, The Netherlands
-
Van Gunsteren WF, Berendsen HJC. Gromos manual. BIOMOS, Biomolecular Software, Laboratory of Physical Chemistry, University of Groningen, The Netherlands; 1987.
-
(1987)
BIOMOS, Biomolecular Software
-
-
Van Gunsteren, W.F.1
Berendsen, H.J.C.2
-
12
-
-
0003544049
-
-
Biomos b.v., Zürich, Groningen, The Netherlands;
-
Van Gunsteren WF, Billeter SR, Eising AA, et al. Biomolecular simulation: the GROMOS96 manual and user guide. Biomos b.v., Zürich, Groningen, The Netherlands; 1996.
-
(1996)
Biomolecular Simulation: the GROMOS96 Manual and User Guide
-
-
Van Gunsteren, W.F.1
Billeter, S.R.2
Eising, A.A.3
-
14
-
-
33646940952
-
Numerical integration of the cartesian equations of motion of a system with constraints; molecular dynamics of n-alkanes
-
Ryckaert JP, Ciccotti G, Berendsen HJC. Numerical integration of the cartesian equations of motion of a system with constraints; molecular dynamics of n-alkanes. J Comp Phys 1977;23:327-341.
-
(1977)
J Comp Phys
, vol.23
, pp. 327-341
-
-
Ryckaert, J.P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
15
-
-
0002775934
-
Interaction models for water in relation to protein hydration
-
Pullman B, editor. D. Reidel Publishing Company, Dordrecht
-
Berendsen HJC, Postma JPM, Van Gunsteren WF, Hermans J. Interaction models for water in relation to protein hydration. In: Pullman B, editor. Intermolecular Forces, D. Reidel Publishing Company, Dordrecht; 1981. p 331-342.
-
(1981)
Intermolecular Forces
, pp. 331-342
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Van Gunsteren, W.F.3
Hermans, J.4
-
17
-
-
0033562584
-
A kinetic model for the internal motions of proteins: Diffusion between multiple harmonic wells
-
Amadei A, De Groot BL, Ceruso MA, Paci M, Di Nola A, Berendsen HJC. A kinetic model for the internal motions of proteins: diffusion between multiple harmonic wells. Proteins 1999;35:283-292.
-
(1999)
Proteins
, vol.35
, pp. 283-292
-
-
Amadei, A.1
De Groot, B.L.2
Ceruso, M.A.3
Paci, M.4
Di Nola, A.5
Berendsen, H.J.C.6
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