Correlating calcium binding, förster resonance energy transfer, and conformational change in the biosensor TN-XXL

Biophysical Journal

Volumn 102, Issue 10, 2012, Pages 2401-2410

  Geiger, Anselm ^a   Russo, Luigi ^b   Gensch, Thomas ^c   Thestrup, Thomas ^a   Becker, Stefan ^b   Hopfner, Karl Peter ^d   Griesinger, Christian ^b   Witte, Gregor ^d   Griesbeck, Oliver ^a  

^a MAX PLANCK INSTITUTE OF NEUROBIOLOGY   (Germany)

^b MAX PLANCK INSTITUTE FOR BIOPHYSICAL CHEMISTRY   (Germany)

^c FORSCHUNGSZENTRUM JÜLICH   (Germany)

^d UNIVERSITY OF MUNICH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CALCIUM; TROPONIN C; TYROSINE;

AMINO ACID SUBSTITUTION; ANIMAL; ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; CHICKEN; FLUORESCENCE RESONANCE ENERGY TRANSFER; GENETIC PROCEDURES; HYDRODYNAMICS; METABOLISM; METHODOLOGY; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PH; POLYACRYLAMIDE GEL ELECTROPHORESIS; PROTEIN CONFORMATION; PROTEIN TERTIARY STRUCTURE; TEMPERATURE;

AMINO ACID SUBSTITUTION; ANIMALS; BIOSENSING TECHNIQUES; CALCIUM; CHICKENS; ELECTROPHORESIS, POLYACRYLAMIDE GEL; FLUORESCENCE RESONANCE ENERGY TRANSFER; HYDRODYNAMICS; HYDROGEN-ION CONCENTRATION; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; PROTEIN CONFORMATION; PROTEIN STRUCTURE, TERTIARY; TEMPERATURE; TROPONIN C; TYROSINE;

EID: 84861117175     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2012.03.065     Document Type: Article

References (55)

1. R. Heim, and R.Y. Tsien Engineering green fluorescent protein for improved brightness, longer wavelengths and fluorescence resonance energy transfer Curr. Biol. 6 1996 178 182
2. B.A. Pollok, and R. Heim Using GFP in FRET-based applications Trends Cell Biol. 9 1999 57 60 (Pubitemid 29151793)
3. A. Miyawaki, and R.Y. Tsien Monitoring protein conformations and interactions by fluorescence resonance energy transfer between mutants of green fluorescent protein Methods Enzymol. 327 2000 472 500 (Pubitemid 34193328)
4. R. Yasuda Imaging spatiotemporal dynamics of neuronal signaling using fluorescence resonance energy transfer and fluorescence lifetime imaging microscopy Curr. Opin. Neurobiol. 16 2006 551 561 (Pubitemid 44466401)
5. A. Miyawaki Development of probes for cellular functions using fluorescent proteins and fluorescence resonance energy transfer Annu. Rev. Biochem. 80 2011 357 373
6. R.H. Newman, M.D. Fosbrink, and J. Zhang Genetically encodable fluorescent biosensors for tracking signaling dynamics in living cells Chem. Rev. 111 2011 3614 3666
7. M. Mank, and O. Griesbeck Genetically encoded calcium indicators Chem. Rev. 108 2008 1550 1564 (Pubitemid 351796397)
8. T. Gensch, and D. Kaschuba Fluorescent genetically encoded calcium indicators and their in vivo application G. Jung, Fluorescent Proteins II: From Fundamental Research to Bioanalytics 2012 Springer-Verlag Berlin, Germany 125 162
9. 2+ probe composed of a single green fluorescent protein Nat. Biotechnol. 19 2001 137 141 (Pubitemid 32144441)
10. 2+ indicators Science 333 2011 1888 1891
11. 2+ based on green fluorescent proteins and calmodulin Nature 388 1997 882 887 (Pubitemid 27377061)
12. 2+ measurements using improved cameleons Proc. Natl. Acad. Sci. USA 96 1999 2135 2140 (Pubitemid 29117880)
13. 2+ by circularly permuted yellow fluorescent proteins Proc. Natl. Acad. Sci. USA 101 2004 10554 10559 (Pubitemid 38955780)
14. 2+ indicators, yellow Cameleon-Nano Nat. Methods 7 2010 729 732
15. 2+ analyzed with an improved genetically encoded fluorescent sensor Proc. Natl. Acad. Sci. USA 101 2004 17404 17409 (Pubitemid 39657417)
16. N. Heim, and O. Griesbeck Genetically encoded indicators of cellular calcium dynamics based on troponin C and green fluorescent protein J. Biol. Chem. 279 2004 14280 14286 (Pubitemid 38468968)
17. J.R. Pearlstone, and W.D. McCubbin L.B. Smillie Spectroscopic analysis of a methionine-48 to tyrosine mutant of chicken troponin C Biochemistry 31 1992 9703 9708
18. M.M. Sorenson, and A.C. da Silva F.C. Reinach Concerted action of the high affinity calcium binding sites in skeletal muscle troponin C J. Biol. Chem. 270 1995 9770 9777
19. W.S. VanScyoc, and B.R. Sorensen M.A. Shea Calcium binding to calmodulin mutants monitored by domain-specific intrinsic phenylalanine and tyrosine fluorescence Biophys. J. 83 2002 2767 2780 (Pubitemid 35265768)
20. V.L. Filatov, and A.G. Katrukha N.B. Gusev Troponin: structure, properties, and mechanism of functioning Biochemistry (Mosc.) 64 1999 969 985 (Pubitemid 129583384)
21. M.X. Li, and M. Chandra L.B. Smillie Properties of isolated recombinant N and C domains of chicken troponin C Biochemistry 33 1994 917 925 (Pubitemid 24058430)
22. C.M. Slupsky, and B.D. Sykes NMR solution structure of calcium-saturated skeletal muscle troponin C Biochemistry 34 1995 15953 15964
23. S. Tsuda, and A. Miura B.D. Sykes Low-temperature-induced structural changes in the Apo regulatory domain of skeletal muscle troponin C Biochemistry 38 1999 5693 5700
24. 2+-binding helix-loop-helix EF-hand motifs Biochem. J. 405 2007 199 221 (Pubitemid 47075156)
25. 2+-switch in the calmodulin superfamily Structure 5 1997 1695 1711 (Pubitemid 28051981)
26. M. Mank, and D.F. Reiff O. Griesbeck A FRET-based calcium biosensor with fast signal kinetics and high fluorescence change Biophys. J. 90 2006 1790 1796
27. M. Mank, and A.F. Santos O. Griesbeck A genetically encoded calcium indicator for chronic in vivo two-photon imaging Nat. Methods 5 2008 805 811
28. P. Schuck Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling Biophys. J. 78 2000 1606 1619 (Pubitemid 30141584)
29. 2+ with quin2 Methods Enzymol. 172 1989 230 262 (Pubitemid 19170355)
30. N. Swindle, and S.B. Tikunova Hypertrophic cardiomyopathy-linked mutation D145E drastically alters calcium binding by the C-domain of cardiac troponin C Biochemistry 49 2010 4813 4820
31. H. Kaneko, and I. Putzier T. Gensch Determination of intracellular chloride concentration in dorsal root ganglion neurons by fluorescence lifetime imaging C.M. Fuller, Calcium-Activated Chloride Channels 2002 Elsevier Academic San Diego 167 189
32. 2+-sensor recoverin probed by the fluorescent dye Alexa647 Proteins 66 2007 492 499 (Pubitemid 46053476)
33. P.V. Konarev, and M.V. Petoukhov D.I. Svergun ATSAS 2.1, a program package for small-angle scattering data analysis J. Appl. Crystallogr. 39 2006 277 286
34. C.D. Putnam, and M. Hammel J.A. Tainer X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution Q. Rev. Biophys. 40 2007 191 285 (Pubitemid 350261954)
35. D.I. Svergun, M.V. Petoukhov, and M.H. Koch Determination of domain structure of proteins from x-ray solution scattering Biophys. J. 80 2001 2946 2953 (Pubitemid 32521666)
36. V.V. Volkov, and D.I. Svergun Uniqueness of ab initio shape determination in small-angle scattering J. Appl. Crystallogr. 36 2003 860 864
37. W. Wriggers, and P. Chacón Using Situs for the registration of protein structures with low-resolution bead models from x-ray solution scattering J. Appl. Crystallogr. 34 2001 773 776 (Pubitemid 33144106)
38. E.F. Pettersen, and T.D. Goddard T.E. Ferrin UCSF Chimera - a visualization system for exploratory research and analysis J. Comput. Chem. 25 2004 1605 1612
39. F. Delaglio, and S. Grzesiek A. Bax NMRPipe: a multidimensional spectral processing system based on UNIX pipes J. Biomol. NMR 6 1995 277 293
40. T.D. Goddard, and D.G. Kneller Sparky 3 1999 University of California San Francisco
41. R. Keller The Computer Aided Resonance Assignment Tutorial 2004 Cantina-Verlag Goldau, Switzerland
42. J. Lebowitz, M.S. Lewis, and P. Schuck Modern analytical ultracentrifugation in protein science: a tutorial review Protein Sci. 11 2002 2067 2079 (Pubitemid 34919611)
43. H.D.T. Mertens, and D.I. Svergun Structural characterization of proteins and complexes using small-angle x-ray solution scattering J. Struct. Biol. 172 2010 128 141
44. D.S. Wishart, and D.A. Case Use of chemical shifts in macromolecular structure determination Methods Enzymol. 338 2001 3 34 (Pubitemid 32666573)
45. S.V. Koushik, and H. Chen S.S. Vogel Cerulean, Venus, and VenusY67C FRET reference standards Biophys. J. 91 2006 L99 L101
46. M. Tramier, and I. Gautier M. Coppey-Moisan Picosecond-hetero-FRET microscopy to probe protein-protein interactions in live cells Biophys. J. 83 2002 3570 3577 (Pubitemid 36041974)
47. M. Millington, and G.J. Grindlay S.W. Magennis High-precision FLIM-FRET in fixed and living cells reveals heterogeneity in a simple CFP-YFP fusion protein Biophys. Chem. 127 2007 155 164 (Pubitemid 46463932)
48. J.W. Borst, and S.P. Laptenok A.J. Visser Structural changes of yellow Cameleon domains observed by quantitative FRET analysis and polarized fluorescence correlation spectroscopy Biophys. J. 95 2008 5399 5411
49. S. Habuchi, and M. Cotlet F.C. De Schryver Resonance energy transfer in a calcium concentration-dependent cameleon protein Biophys. J. 83 2002 3499 3506 (Pubitemid 36041966)
50. A. Villoing, and M. Ridhoir H. Pasquier Complex fluorescence of the cyan fluorescent protein: comparisons with the H148D variant and consequences for quantitative cell imaging Biochemistry 47 2008 12483 12492
51. G. Valentin, and C. Verheggen E. Bertrand Photoconversion of YFP into a CFP-like species during acceptor photobleaching FRET experiments Nat. Methods 2 2005 801 (Pubitemid 41741520)
52. M.T. Kirber, K. Chen, and J.F. Keaney Jr. YFP photoconversion revisited: confirmation of the CFP-like species Nat. Methods 4 2007 767 768 (Pubitemid 350055566)
53. C.S. Farah, and F.C. Reinach The troponin complex and regulation of muscle contraction FASEB J. 9 1995 755 767
54. M.L. Markwardt, and G.-J. Kremers M.A. Rizzo An improved cerulean fluorescent protein with enhanced brightness and reduced reversible photoswitching PLoS ONE 6 2011 e17896
55. J. Goedhart, and L. van Weeren T.W. Gadella Jr. Bright cyan fluorescent protein variants identified by fluorescence lifetime screening Nat. Methods 7 2010 137 139