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Volumn 63, Issue 7, 2012, Pages 2491-2501

A collection of INDEL markers for map-based cloning in seven Arabidopsis accessions

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS PROTEIN;

EID: 84861086118     PISSN: 00220957     EISSN: 14602431     Source Type: Journal    
DOI: 10.1093/jxb/err422     Document Type: Article
Times cited : (62)

References (33)
  • 1
    • 33745352101 scopus 로고    scopus 로고
    • Moving forward in reverse: Genetic technologies to enable genome-wide phenomic screens in Arabidopsis
    • DOI 10.1038/nrg1893, PII N1893
    • Alonso JM, Ecker JR. 2006. Moving forward in reverse: genetic technologies to enable genome-wide phenomic screens in Arabidopsis. Nature Reviews Genetics 7, 524-536. (Pubitemid 43943570)
    • (2006) Nature Reviews Genetics , vol.7 , Issue.7 , pp. 524-536
    • Alonso, J.M.1    Ecker, J.R.2
  • 4
    • 0031202659 scopus 로고    scopus 로고
    • A deletion in the PHYD gene of the arabidopsis wassilewskija ecotype defines a role for phytochrome D in red/far-red light sensing
    • DOI 10.1105/tpc.9.8.1317
    • AukermanMJ, HirschfeldM, Wester L, WeaverM, Clack T, Amasino RM, Sharrock RA. 1997. A deletion in the PHYD gene of the Arabidopsis Wassilewskija ecotype defines a role for phytochrome D in red/far-red light sensing. The Plant Cell 9, 1317-1326. (Pubitemid 28178404)
    • (1997) Plant Cell , vol.9 , Issue.8 , pp. 1317-1326
    • Aukerman, M.J.1    Hirschfeld, M.2    Wester, L.3    Weaver, M.4    Clack, T.5    Amasino, R.M.6    Sharrock, R.A.7
  • 6
    • 69549116107 scopus 로고    scopus 로고
    • BreakDancer: An algorithm for high-resolution mapping of genomic structural variation
    • Chen K, Wallis JW, McLellan MD, et al. 2009. BreakDancer: an algorithm for high-resolution mapping of genomic structural variation. Nature Methods 6, 677-681.
    • (2009) Nature Methods , vol.6 , pp. 677-681
    • Chen, K.1    Wallis, J.W.2    McLellan, M.D.3
  • 7
    • 47849090742 scopus 로고    scopus 로고
    • Progressive fine mapping in experimental populations: An improved strategy toward positional cloning
    • Chi XF, Lou XY, Shu QY. 2008. Progressive fine mapping in experimental populations: an improved strategy toward positional cloning. Journal of Theoretical Biology 253, 817-823.
    • (2008) Journal of Theoretical Biology , vol.253 , pp. 817-823
    • Chi, X.F.1    Lou, X.Y.2    Shu, Q.Y.3
  • 8
    • 0032103147 scopus 로고    scopus 로고
    • Sur2 mutations of Arabidopsis thaliana define a new locus involved in the control of auxin homeostasis
    • Delarue M, Prinsen E, Onckelen HV, Caboche M, Bellini C. 1998. Sur2 mutations of Arabidopsis thaliana define a new locus involved in the control of auxin homeostasis. The Plant Journal 14, 603-611.
    • (1998) The Plant Journal , vol.14 , pp. 603-611
    • Delarue, M.1    Prinsen, E.2    Onckelen, H.V.3    Caboche, M.4    Bellini, C.5
  • 9
    • 77952425335 scopus 로고    scopus 로고
    • Utilization of next-generation sequencing platforms in plant genomics and genetic variant discovery
    • Deschamps S, Campbell MA. 2010. Utilization of next-generation sequencing platforms in plant genomics and genetic variant discovery. Molecular Breeding 25, 553-570.
    • (2010) Molecular Breeding , vol.25 , pp. 553-570
    • Deschamps, S.1    Campbell, M.A.2
  • 10
    • 0037447311 scopus 로고    scopus 로고
    • The RUB/Nedd8 conjugation pathway is required for early development in Arabidopsis
    • DOI 10.1093/emboj/cdg190
    • Dharmasiri S, Dharmasiri N, Hellmann H, Estelle M. 2003. The RUB/Nedd8 conjugation pathway is required for early development in Arabidopsis. EMBO Journal 22, 1762-1770. (Pubitemid 36460133)
    • (2003) EMBO Journal , vol.22 , Issue.8 , pp. 1762-1770
    • Dharmasiri, S.1    Dharmasiri, N.2    Hellmann, H.3    Estelle, M.4
  • 11
    • 80053132716 scopus 로고    scopus 로고
    • Multiple reference genomes and transcriptomes for Arabidopsis thaliana
    • Gan X, Stegle O, Behr J, et al. 2011. Multiple reference genomes and transcriptomes for Arabidopsis thaliana. Nature 477, 419-423.
    • (2011) Nature , vol.477 , pp. 419-423
    • Gan, X.1    Stegle, O.2    Behr, J.3
  • 12
    • 77956093433 scopus 로고    scopus 로고
    • A platform of high-density INDEL/CAPS markers for map-based cloning in Arabidopsis
    • Hou X, Li L, Peng Z, et al. 2010. A platform of high-density INDEL/CAPS markers for map-based cloning in Arabidopsis. The Plant Journal 63, 880-888.
    • (2010) The Plant Journal , vol.63 , pp. 880-888
    • Hou, X.1    Li, L.2    Peng, Z.3
  • 13
    • 79951558745 scopus 로고    scopus 로고
    • ARTADE2DB: Improved statistical inferences for Arabidopsis gene functions and structure predictions by dynamic structure-based dynamic expression (DSDE) analyses
    • Iida K, Kawaguchi S, Kobayashi N, et al. 2011. ARTADE2DB: improved statistical inferences for Arabidopsis gene functions and structure predictions by dynamic structure-based dynamic expression (DSDE) analyses. Plant and Cell Physiology 52, 254-264.
    • (2011) Plant and Cell Physiology , vol.52 , pp. 254-264
    • Iida, K.1    Kawaguchi, S.2    Kobayashi, N.3
  • 14
    • 33745280268 scopus 로고    scopus 로고
    • Gene identification and cloning by molecular marker mapping
    • Jander G. 2006. Gene identification and cloning by molecular marker mapping. Methods in Molecular Biology 323, 115-126.
    • (2006) Methods in Molecular Biology , vol.323 , pp. 115-126
    • Jander, G.1
  • 16
    • 77953225557 scopus 로고    scopus 로고
    • Identification of a spontaneous frame shift mutation in a nonreference Arabidopsis accession using whole genome sequencing
    • Laitinen RA, Schneeberger K, Jelly NS, Ossowski S, Weigel D. 2010. Identification of a spontaneous frame shift mutation in a nonreference Arabidopsis accession using whole genome sequencing. Plant Physiology 153, 652-654.
    • (2010) Plant Physiology , vol.153 , pp. 652-654
    • Laitinen, R.A.1    Schneeberger, K.2    Jelly, N.S.3    Ossowski, S.4    Weigel, D.5
  • 17
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 18
    • 62349102325 scopus 로고    scopus 로고
    • Next is now: New technologies for sequencing of genomes, transcriptomes, and beyond
    • Lister R, Gregory BD, Ecker JR. 2009. Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond. Current Opinion in Plant Biology 12, 107-118.
    • (2009) Current Opinion in Plant Biology , vol.12 , pp. 107-118
    • Lister, R.1    Gregory, B.D.2    Ecker, J.R.3
  • 19
    • 0033926906 scopus 로고    scopus 로고
    • Positional cloning in Arabidopsis. Why it feels good to have a genome initiative working for you
    • Lukowitz W, Gillmor CS, Scheible WR. 2000. Positional cloning in arabidopsis. Why it feels good to have a genome initiative working for you. Plant Physiology 123, 795-805. (Pubitemid 30466831)
    • (2000) Plant Physiology , vol.123 , Issue.3 , pp. 795-805
    • Lukowitz, W.1    Gillmor, C.S.2    Scheible, W.-R.3
  • 21
    • 0142214756 scopus 로고    scopus 로고
    • Forward genetics and map-based cloning approaches
    • DOI 10.1016/j.tplants.2003.09.002
    • Peters JL, Cnudde F, Gerats T. 2003. Forward genetics and mapbased cloning approaches. Trends in Plant Science 8, 484-491. (Pubitemid 37325558)
    • (2003) Trends in Plant Science , vol.8 , Issue.10 , pp. 484-491
    • Peters, J.L.1    Cnudde, F.2    Gerats, T.3
  • 22
    • 85047686529 scopus 로고    scopus 로고
    • A physical amplified fragment-length polymorphism map of Arabidopsis
    • DOI 10.1104/pp.127.4.1579
    • Peters JL, Constandt H, Neyt P, Cnops G, Zethof J, Zabeau M, Gerats T. 2001. A physical amplified fragment-length polymorphism map of Arabidopsis. Plant Physiology 127, 1579-1589. (Pubitemid 34050026)
    • (2001) Plant Physiology , vol.127 , Issue.4 , pp. 1579-1589
    • Peters, J.L.1    Constandt, H.2    Neyt, P.3    Cnops, G.4    Zethof, J.5    Zabeau, M.6    Gerats, T.7
  • 23
    • 5144235220 scopus 로고    scopus 로고
    • Estimating the degree of saturation in mutant screens
    • DOI 10.1534/genetics.103.024430
    • Pollock DD, Larkin JC. 2004. Estimating the degree of saturation in mutant screens. Genetics 168, 489-502. (Pubitemid 39346611)
    • (2004) Genetics , vol.168 , Issue.1 , pp. 489-502
    • Pollock, D.D.1    Larkin, J.C.2
  • 24
    • 0142214675 scopus 로고    scopus 로고
    • Sharing the Wealth. The Mechanics of a Data Release from Industry
    • DOI 10.1104/pp.103.024141
    • Rounsley S. 2003. Sharing the wealth. The mechanics of a data release from industry. Plant Physiology 133, 438-440. (Pubitemid 37325653)
    • (2003) Plant Physiology , vol.133 , Issue.2 , pp. 438-440
    • Rounsley, S.1
  • 27
    • 79955726394 scopus 로고    scopus 로고
    • Fast-forward genetics enabled by new sequencing technologies
    • Schneeberger K, Weigel D. 2011. Fast-forward genetics enabled by new sequencing technologies. Trends in Plant Science 16, 282-288.
    • (2011) Trends in Plant Science , vol.16 , pp. 282-288
    • Schneeberger, K.1    Weigel, D.2
  • 28
    • 0036160709 scopus 로고    scopus 로고
    • Arabidopsis cytochrome p450 cyp83b1 mutations activate the tryptophan biosynthetic pathway
    • Smolen G, Bender J. 2002. Arabidopsis cytochrome P450 cyp83B1 mutations activate the tryptophan biosynthetic pathway. Genetics 160, 323-332. (Pubitemid 34118293)
    • (2002) Genetics , vol.160 , Issue.1 , pp. 323-332
    • Smolen, G.1    Bender, J.2
  • 32
    • 79953862774 scopus 로고    scopus 로고
    • Identification of EMS-induced causal mutations in a non-reference Arabidopsis thaliana accession by whole genome sequencing
    • Uchida N, Sakamoto T, Kurata T, Tasaka M. 2011. Identification of EMS-induced causal mutations in a non-reference Arabidopsis thaliana accession by whole genome sequencing. Plant and Cell Physiology 52, 716-722.
    • (2011) Plant and Cell Physiology , vol.52 , pp. 716-722
    • Uchida, N.1    Sakamoto, T.2    Kurata, T.3    Tasaka, M.4
  • 33
    • 70350694443 scopus 로고    scopus 로고
    • Pindel: A pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads
    • Ye K, Schulz MH, Long Q, Apweiler R, Ning Z. 2009. Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads. Bioinformatics 25, 2865-2871.
    • (2009) Bioinformatics , vol.25 , pp. 2865-2871
    • Ye, K.1    Schulz, M.H.2    Long, Q.3    Apweiler, R.4    Ning, Z.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.