Development of two multiplex PCR systems for the analysis of 14 X-chromosomal STR loci in a southern Brazilian population sample

International Journal of Legal Medicine

Volumn 126, Issue 2, 2012, Pages 327-330

  Penna, Larissa Siqueira ^a,b   Silva, Fernanda Gamio ^b   Salim, Patricia Hartstein ^a   Ewald, Gisele ^b   Jobim, Mariana ^b   De Azevedo Magalhães, José Antônio ^b   Jobim, Luiz Fernando ^a,b  

^a FEDERAL UNIVERSITY OF RIO GRANDE DO SUL   (Brazil)

^b HOSPITAL DE CLÍNICAS DE PORTO ALEGRE   (Brazil)

Author keywords

Brazil; Population data; Rio grande do sul; STRS; X chromosome

Indexed keywords

MICROSATELLITE DNA;

ARTICLE; BRAZIL; CHROMOSOME 14; FEMALE; FORENSIC GENETICS; GENE AMPLIFICATION; GENE FREQUENCY; GENETIC LINKAGE; GENETIC MARKER; GENETICS; HAPLOTYPE; HUMAN; INSTRUMENTATION; MALE; METHODOLOGY; MOLECULAR GENETICS; MULTIPLEX POLYMERASE CHAIN REACTION; NUCLEOTIDE SEQUENCE; POPULATION GENETICS; X CHROMOSOME;

BASE SEQUENCE; BRAZIL; CHROMOSOMES, HUMAN, PAIR 14; CHROMOSOMES, HUMAN, X; FEMALE; FORENSIC GENETICS; GENE AMPLIFICATION; GENE FREQUENCY; GENETIC LINKAGE; GENETIC MARKERS; GENETICS, POPULATION; HAPLOTYPES; HUMANS; MALE; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; MULTIPLEX POLYMERASE CHAIN REACTION;

EID: 84861013729     PISSN: 09379827     EISSN: 14371596     Source Type: Journal    
DOI: 10.1007/s00414-011-0629-7     Document Type: Article

References (33)

1. Asamura H, Sakai H, Kobayashi K, Ota M, Fukushima H (2006) MiniX-STR multiplex system population study in Japan and application to degraded DNA analysis. Int J LegalMed 120:174-181.
2. Shin SH, Yu JS, Park SW, Min GS, Chung KW (2005) Genetic analysis of 18 X-linked short tandem repeat markers in Korean population. Forensic Sci Int 147:35-41.
3. Pereira R, Gomes I, Amorim A, Gusmão L (2007) Genetic diversity of 10 X chromosome STRs in northern Portugal. Int J Legal Med 121:192-197.
4. Turrina S, Atzei R, Filippini G, Leo DD (2007) Development and forensic validation of a new multiplex PCR assay with 12 Xchromosomal short tandemrepeats. Forensic Sci Int Genet 1:201-204.
5. Poetsch M, El-Mostaqim D, Tschentscher F, Browne ENL, Timmann C, Hortsmann RD, Wurmb-Schwark N (2009) Allele frequencies of 11 X-chromosomal loci in a population sample from Ghana. Int J legal Med 123:81-83.
6. Desmarais D, Zhong Y, Chakraborty R, Perreault C, Busque L (1998) Development of a highly polymorphic STR marker for identity testing purposes at the human androgen receptor gene (HUMARA). J Forensic Sci 43:1046-1049.
7. Gomes I, Prinz M, Pereira R, Meyers C, Mikulasovich RS, Amorim A, Carracedo A, Gusmão L (2007) Genetic analysis of three US population groups using an X-chromosomal STR decaplex. Int J Legal Med 121:198-203.
8. Hering S, Kuhlisch E, Szibor R (2001) Development of the Xlinked tetrameric microsatellite marker HumDXS6789 for forensic purposes. Forensic Sci Int 119:42-46.
9. Edelmann J, Hering S, Kuhlisch E, Szibor R (2002) Validation of the STR DXS7424 and the linkage situation on the Xchromosome. Forensic Sci Int 125:217-222.
10. Rodrigues EMR, Leite FPN, Hutz MH, Palha TJBF, Santos AKCR, Santos SEB (2008) A multiplex PCR for 11 X chromosome STR markers and population data from a Brazilian Amazon Region. Forensic Sci Int Genet 2:154-158.
11. Edelmann J, Szibor R (1999) Validation of the HumDXS6807 short tandem repeat polymorphism for forensic application. Electrophoresis 20:2844-2846.
12. Edelmann J, Deichsel D, Hering S, Plate I, Szibor R (2002) Sequence variation and allele nomenclature for the X-linked STRs DXS9895, DXS8378, DXS7132, DXS6800, DXS7133, GATA172D05, DXS7423 and DXS8377. Forensic Sci Int 129:99-103.
13. Edelmann J, Szibor R (2001) DXS101: a highly polymorphic Xlinked STR. Int J Legal Med 114:301-304.
14. Poetsch M, Petersmann H, Repenning A, Lignitz E (2005) Development of two pentaplex systems with X-chromosomal STR loci and their allele frequencies in a northeast German population. Forensic Sci Int 155:71-76.
15. Hering S, Szibor R (2000) Development of the X-linked tetrameric microsatellite marker DXS9898 for forensic purposes. J Forensic Sci 45:929-931.
16. Edelmann J, Szibor R (2005) Validation of the X-linked STR DXS6801. Forensic Sci Int 148:219-220.
17. Robino C, Giolitti A, Gino S, Torre C (2006) Development of two multiplex PCR systems for the analysis of 12 X-chromosomal STR loci in a northwestern Italian population sample. Int J Legal Med 120:315-318.
18. Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evol Bioinform Online 1:47-50.
19. Abramson JH (2011) WINPEPI updated: computer programs for epidemiologists, and their teaching potential. Epidemiol Perspect Innov 8:1.
20. Finner H (1990) Some new inequalities for the range distribution with application to the determination of optimum significance levels of multiple range tests. J Am Stat Assoc 85:191-194.
21. Botstein D, White RI, Skolnick M, Davis RW (1980) Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet 32:314-331.
22. Nei M, Roychoudhury AK (1974) Sampling variances of heterozygosity and genetic distance. Genetics 76:379-390.
23. Slatkin M (2008) Linkage disequilibrium - understanding the evolutionary past and mapping the medical future. Nat Rev Genet 9:477-485.
24. Amorim CEG, Wang S, Marrero AR, Salzano FM, Ruiz- Linares A, Bortolini MC (2011) X-chromosomal genetic diversity and linkage disequilibrium patterns in Amerindians and Non-Amerindian populations. Am J Hum Biol 23:299- 304.
25. Tavares CC, Gusmão L, Domingues C, Domingues P, Silva DA, Aquino J, Peixe C, Amorim A, Carvalho EF (2008) Population data for six X-chromosome STR loci in a Rio de Janeiro (Brazil) sample: usefulness in forensic casework. Forensic Sci Int Genet Suppl Ser 1:164-166.
26. Kang L, Li S (2006) X-chromosome STR polymorphism of Luoba Ethnic Group living in Tibet (SW China). Forensic Sci Int 156:88-89.
27. Aler M, Sánchez-Diz P, Gomes I, Gisbert M, Carracedo A, Amorim A, Gusmão L (2007) Genetic data of 10 X-STRs in a Spanish population sample. Forensic Sci Int 173:193-196.
28. Gomes I, Pereira V, Gomes V, Prata MJ, Pinto N, Carracedo A, Amorim A, Gusmão L (2009) The Karimojong from Uganda: genetic characterization using an X-STR decaplex system. Forensic Sci Int Genet 3:127-128.
29. Martins JA, Costa JC, Paneto GG, Gusmão L, Sánchez-Diz P, Carracedo A, Cicarelli RMB (2009) Genetic data of 10 Xchromosomal loci in Vitória population (Espírito Santo State, Brazil). Forensic Sci Int Genet, in press.
30. Cainé LM, Zarrabeitia MT, Riancho JA, Pinheiro MF (2010) Genetic data of a Brazilian population sample (Santa Catarina) using an X-STR decaplex. J Forensic Leg Med 17:272-274.
31. Martins JA, Costa JC, Paneto GG, Figueiredo RF, Gusmão L, Sánchez-Diz P, Carracedo A, Cicarelli RM (2010) Genetic profile characterization of 10 X-STRs in four populations of the southeastern region of Brazil. Int J Legal Med 124:427- 432.
32. Leite FPN, Santos SEB, Rodriguez EMR, Callegari-Jacques SM, Demarchi DA, Tsuneto LT, Petzl-Erler ML, Salzano FM, Hutz MH (2009) Linkage disequilibrium patterns and genetic structure of Amerindian and non-Amerindian Brazilian populations revealed by long-range X-STR markers. Am J Phys Anthropol 139:404-412.
33. Ribeiro-Rodrigues EM, de Palha T J, Bittencourt EA, Ribeiro- Dos-Santos A, Santos S (2011) Extensive survey of 12 X-STRs reveals genetic heterogeneity among Brazilian populations. Int J Legal 125:445-452.