Genetic diversity of 10 X chromosome STRs in northern Portugal

International Journal of Legal Medicine

Volumn 121, Issue 3, 2007, Pages 192-197

  Pereira, Rui ^a   Gomes, Iva ^a,b   Amorim, António ^a   Gusmão, Leonor ^a  

^a UNIVERSITY OF PORTO   (Portugal)

^b UNIVERSITY OF SANTIAGO DE COMPOSTELA   (Spain)

Author keywords

Genetic identification; Northern Portugal; Population data; STR; X chromosome

Indexed keywords

ARTICLE; CONTROLLED STUDY; EUROPE; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENE LOCUS; GENETIC ASSOCIATION; GENETIC DATABASE; GENETIC VARIABILITY; GERMANY; HAPLOTYPE; HUMAN; LATVIA; MALE; MARKER GENE; MOLECULAR GENETICS; POPULATION GENETICS; POPULATION RESEARCH; PORTUGAL; PRIORITY JOURNAL; STATISTICAL SIGNIFICANCE; X CHROMOSOME;

CHROMOSOMES, HUMAN, X; DNA FINGERPRINTING; GENE FREQUENCY; GENETICS, POPULATION; HUMANS; LINKAGE DISEQUILIBRIUM; MALE; PORTUGAL; TANDEM REPEAT SEQUENCES; VARIATION (GENETICS);

EID: 34249874020     PISSN: 09379827     EISSN: 14371596     Source Type: Journal    
DOI: 10.1007/s00414-006-0144-4     Document Type: Article

References (34)

1. Asamura H, Sakai H, Kobayashi K, Ota M, Fukushima H (2006) MiniX-STR multiplex system population study in Japan and application to degraded DNA analysis. Int J Legal Med 120:174-181
2. Beleza S, Gusmão L, Lopes A et al (2006) Micro-phylogeographic and demographic history of Portuguese male lineages. Ann Hum Genet 70:181-194
3. Bini C, Ceccardi S, Ferri G et al (2005) Development of a heptaplex PCR system to analyse X-chromosome STR loci from five Italian population samples. A collaborative study. Forensic Sci Int 153:231-236
4. Desmarais D, Zhong Y, Chakraborty R, Perreault C, Busque L (1998) Development of a highly polymorphic STR marker for identity testing purposes at the human androgen receptor gene (HUMARA). J Forensic Sci 43:1046-1049
5. Edelmann J, Hering S, Michael M et al (2001) 16 X-chromosome STR loci frequency data from a German population. Forensic Sci Int 124:215-218
6. Edelmann J, Deichsel D, Hering S, Plate I, Szibor R (2002) Sequence variation and allele nomenclature for the X-linked STRs DXS9895, DXS8378, DXS7132, DXS6800, DXS7133, GATA172D05, DXS7423 and DXS8377. Forensic Sci Int 129:99-103
7. Edelmann J, Deichsel D, Plate I, Kayser M, Szibor R (2003) Validation of the X-chromosomal STR DXS6809. Int J Legal Med 117:241-244
8. Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1:47-50
9. Gomes I, Prinz M, Pereira R et al (2006) Genetic analysis of three US population groups using a X-chromosomal STR decaplex. Int J Legal Med (in press)
10. Gusmão L, Sánchez-Diz P, Alves C, Lareu MV, Carracedo A, Amorim A (2000) Genetic diversity of nine STRs in two northwest Iberian populations: Galicia and northern Portugal. Int J Legal Med 114:109-113
11. Gusmão L, Butler J, Carracedo A et al (2006) DNA Commission of the International Society of Forensic Genetics (ISFG): an update of the recommendations on the use of Y-STRs in forensic analysis. Int J Legal Med 120:191-200
12. Laan M, Wiebe V, Khusnutdinova E, Remm M, Pääbo S (2004) X-chromosome as a marker for population history: linkage disequilibrium and haplotype study in Eurasian populations. Eur J Hum Genet 13:452-462
13. Lander ES, Linton LM, Birren B et al (2001) Initial sequencing and analysis of the human genome. Nature 409:860-921
14. Lareu MV, Phillips CP, Carracedo A, Lincoln PJ, Syndercombe Court D, Thomson JA (1994) Investigation of the STR locus HUMTH01 using PCR and two electrophoresis formats: UK and Galician Caucasian population surveys and usefulness in paternity investigations. Forensic Sci Int 66:41-52
15. Li WH, Yi S, Makova K (2002) Male-driven evolution. Curr Opin Genet Dev 12:650-656
16. Peloso G, Grignani P, Previdere C (2004) Allele distribution of five X-chromosome STR loci in an Italian population sample. Int Congr Ser 1261:260-262
17. Pepinski W, Skawronska M, Niemcunowicz-Janica A, Koc-Zorawska E, Janica J, Soltyszewski I (2005) Polymorphism of four X-chromosomal STRs in a Polish population sample. Forensic Sci Int 151:93-95
18. Pereira L, Prata MJ, Amorim A (2000) Diversity of mtDNA lineages in Portugal: not a genetic edge of European variation. Ann Hum Genet 64:491-506
19. Pérez-Lezaun A, Calafell F, Clarimón J et al (2000) Allele frequencies of 13 short tandem repeats in population samples from the Iberian Peninsula and northern Africa. Int J Legal Med 113:208-214
20. Poetsch M, Sabule A, Petersmann H, Volksone V, Lignitz E (2006) Population data of 10 X-chromosomal loci in Latvia. Forensic Sci Int 157:206-209
21. Robino C, Giolitti A, Gino S, Torre C (2006) Development of two multiplex PCR systems for the analysis of 12 X-chromosomal STR loci in a northwestern Italian population sample. Int J Legal Med 120:315-318
22. Schaffner SF (2004) The X chromosome in population genetics. Nat Rev Genet 5:43-51
23. Slatkin M (1995) A measure of population subdivision based on microsatellite allele frequencies. Genetics 139:457-462
24. Szibor R, Krawczak M, Hering S, Edelmann J, Kuhlisch E, Krause D (2003a) Use of X-linked markers for forensic purposes. Int J Legal Med 117:67-74
25. Szibor R, Plate I, Edelmann J, Hering S, Kuhlisch E, Michael M, Krause D (2003b) Chromosome X haplotyping in deficiency paternity testing principles and case report. Int Congr Ser 1239:815-820
26. Szibor R, Edelmann J, Zarrabeitia MT, Riancho JA (2003c) Sequence structure and population data of the X-linked markers DXS7423 and DXS8377-clarification of conflicting statements published by two working groups. Forensic Sci Int 134:72-73
27. Szibor R, Hering S, Kuhlisch E, Plate I, Demberger S, Krawczak M, Edelmann J (2005) Haplotyping of STR cluster DXS6801-DXS6809-DXS6789 on Xq21 provides a powerful tool for kinship testing. Int J Legal Med 119:363-369
28. Szibor R, Hering S, Edelmann J (2006) A new Web site compiling forensic chromosome X research is now online. Int J Legal Med 120:252-254
29. Turrina S, De Leo D (2003) Population data of three X-chromosomal STRs: DXS7132, DXS7133 and GATA172D05 in north Italy. J Forensic Sci 48:1428-1429
30. Vauhkonen H, Vauhkonen M, Sipponen P, Sajantila A (2004) Correlation between the allelic distribution of STRs in a Finnish population and phenotypically different gastrointestinal tumours: a study using four X-chromosomal markers (DXS7423, DXS8377, ARA, DXS101). Ann Hum Genet 68:555-562
31. Wiegand P, Berger B, Edelmann J, Parson W (2003) Population genetic comparisons of three X-chromosomal STRs. Int J Legal Med 117:62-65
32. Zalán A, Völgyi A, Jung M, Peterman O, Pamjav H (2006) Hungarian population data of four X-linked markers: DXS8378, DXS7132, HPRTB, and DXS7423. Int J Legal Med (DOI 10.1007/s00414-005-0051-0 )
33. Zarrabeitia M, Alonso A, Martin J et al (2006) Study of six X-linked tetranucleotide microsatellites: population data from five Spanish regions. Int J Legal Med 120:147-150
34. Zarrabeitia MT, Alonso A, Zarrabeitia A, Castro A, Fernandez I, Pancorbo MM (2004) X-linked microsatellites in two northern Spain populations. Forensic Sci Int 145:57-59