Human microbiome - Health and disease;Mikrobiom czŁowieka - Zdrowie i choroba

Postepy Mikrobiologii

Volumn 51, Issue 1, 2012, Pages 27-36

  Binek, Marian ^a  

^a Wydziału Medycyny Weterynaryjnej ^*  (Poland)

Author keywords

Homeostasis; Metagenom; Microbiom; Microbiota

Indexed keywords

GLYCOCONJUGATE; PATTERN RECOGNITION RECEPTOR; TOLL LIKE RECEPTOR;

BACTERIAL IMMUNITY; DISEASES; ECOLOGICAL NICHE; EPITHELIUM CELL; HEALTH; HIGH THROUGHPUT SEQUENCING; HOMEOSTASIS; HOST PATHOGEN INTERACTION; HUMAN; HUMAN CELL; IMMUNE SYSTEM; INTESTINE FLORA; MICROBIOME; MOLECULAR INTERACTION; MOUTH FLORA; NONHUMAN; REVIEW; SIGNAL TRANSDUCTION; SKIN FLORA; SYMBIOSIS; VAGINA FLORA;

BACTERIA (MICROORGANISMS); MAMMALIA;

EID: 84860899799     PISSN: 00794252     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review

References (51)

1. Acheson D.W., Luccioli S.: Microbial-gut interaction in health and disease. Mucosal immune responses. Best Prac. Res. Clin. Gastroenterol. 18, 238-404 (2004)
2. An G., Shapiro M., Crandall M., Issa M., West M.: Critical illness as ecological collapse: modeling the impact of stress, ischemia, and therapy on host-bacterial ecology of the gut. Surg. Infect. 9, 277 (2008)
3. Are A., Aronsson L., Wang S., Greicius G., Lee Y.K., Gustafsson S., Arulampalam V.: Enterococcus faecalis from newborn babies regulate endogenous PPARγ activity and IL-10 levels in colonic epithelial cells. Proc. Natl. Acad. Sci. USA, 105, 1943-1948 (2008)
4. Blum S., Schiffrin E.J.: Intestinal microflora and homeostasis of the mucosal immune response: implications for probiotic bacteria. Curr. Issues Intest. Microbiol. 4, 53-60 (2003)
5. Brandl K., Plitas G., Schnabl B., DeMatteo R.P., Pamer E.G.: MyD88-mediated signals induce the bacterial lectin RegIIIγ and protect mice against intestinal Listeria monocytogenes infection. J. Exp. Med. 204, 1891-1900 (2007)
6. Brisbin J.T., Gong J., Sharif S.: Interaction between commensal bacteria and the gut-associated immune system of the chicken. Anim. Health Res. Rev. 9, 101-110 (2008)
7. Bry L., Falk P.G., Midvedt T., Gordon I.J.: A model for host-microbial cross-talk in an open mammalian ecosystem. Science, 272, 1380-1383 (1996)
8. Clavel T., Haller D.: Molecular interactions between bacteria, the epithelium, and the mucosal immune system in the intestinal tract: implications for chronic inflammation. Curr. Issues Intest. Microbiol. 8, 25-43 (2007)
9. Eckburg PB., Bik E.M., Bernstein C.N., Purdom E., Dethlefsen L., Sargent M., Gill S.R., Nelson K.E., Relman D.A.: Diversity of the human intestinal microbial flora. Science, 308, 35-1638 (2005)
10. Ferreira R.B.R., Antunes L.C.M., Finlay B.B.: Should the human microbiome be considered when developing vaccines? PLoS Pathogens, 6, 1-2 (2010)
11. Flint H.J., Bayer E., Rincon M.T., Lamed R., White B.A.: Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis. Nat. Rev. Microbiol. 6, 121-131 (2008)
12. Foster S.L., Hargreaves D.C., Medzhitov R.: Gene-specific control of inflammation by TLR-induced chromatin modification. Nature, 447, 972-978 (2007)
13. Freitas M., Axelsson L.G., Cayuela C., Midvedt T., Trugnan G.: Microbial-host interactions specifically control glycosylation pattern in intestine mouse mucosa. Histochem. Cell Biol. 118, 149-161 (2002)
14. Goldberg R.F., Austen W.G., Zhang X., Munene G., Mustafa G., Biswas S., McCormack M., Eberlin K.R., Nguyen J.T., Taflidede H.S., Warren H.S., Narisawa S., Millan J.L., Hodin R.: Intestinal alkaline phosphatase is a gut mucosal defense factor maintained by enteral nutrition. Proc. Natl. Acad. Sci. USA, 105, 3551-3556 (2008)
15. Griece E.A., Segre J.A.: The skin microbiome. Nat. Rev. Microbiol. 9, 244-253 (2011)
16. Handelsman J.: Metagenomics: Application of genomics to uncultured microorganismas. Microbiol. Mol. Biol. Rev. 68, 669-685 (2004)
17. Hattori M., Taylor T.D.: The human intestinal microbiome: a new frontier of human biology. DNA Research, 16, 1-12 (2009)
18. Holmes E., Loo R.L., Stamler J., Bictash M., Yap I.J.S., Chan Q., Ebbels T., De Ioro M., Brown I.J., Veselkov K.A., Daviglus M.L., Keteloot H., Ueshima H., Zhao L., Nicholson J.K., Elliott P.: Human metabolic phenotype diversity and its association with diet and blood pressure. Nature, 453, 396-400 (2008)
19. Hörmannsperger G., Haller D.: Molecular crosstalk of probiotic bacteria with the intestinal immune system: clinical relevance in the context of inflammatory bowel disease. Int. J.Med. Microbiol. 300, 63-73 (2010)
20. Hooper L.V., Gordon J.I.: Commensal host bacterial relationships in the gut. Science, 292, 1115-1118 (2001)
21. Kelly D., King T., Aminov R.: Importance of microbial colonization of the gut in early life to the development of immunity. Mutat. Res. 622, 58-69 (2007)
22. Kizerwetter-Świda M., Binek M.: Salivaricin B gene-its localization and RFLP analysis in two potentially probiotic Lactobacillus salivarius strains. Bull. Vet. Inst. Pulawy, 54, 513-516 (2010)
23. Koenig J.E., Spor A., Scalone N., Fricker A.D., Stombaugh J., Knight R., Angenent L.T., Ley R.E.: Succession of microbial consortia in the developing infant gut microbiome. www.pnas.org/cgi/doi/10.1073/pnas.1000081107
24. Lee Y.K., Mazmanian S.K.: Has the microbiota played a critical role in the evolution of the adaptive immune system? Science, 330, 1768-1773 (2010)
25. Ley R.E., Turnbaugh P.J., Klein S., Gordon J.I.: Microbial ecology: Human gut microbes associated with obesity. Nature, 444, 1022-1023 (2006)
26. Liu C.H., Lee S.M., Vanlare J.M., Kasper D.L., Mazmanian S.K.: Regulation of surface architecture by symbiotic bacteria mediates host colonization. Proc. Natl. Acad. Sci. USA, 105, 3951-3956 (2008)
27. Lu L., Walker W.A.: Pathologic and physiological interaction of bacteria with the gastrointestinal epithelium. Am. J. Clin. Nutr. 73, 1124S-1130S (2001)
28. Mardis E.R.: The impact of next-generation sequencing technology on genetics. Trends Genet. 24, 133-141 (2008)
29. Matsuki T., Watanabe K., Fujimoto J., Takada T., Tanaka R.: Use of 16S rRNA gene-targeted group-specific primers for Real-time PCR analysis of predominant bacteria in human feces. Appl. Environ. Microbiol. 70, 7220-7228 (2004)
30. Ménard S., Forster V., Lotz M., Gütle D., Duerr C.U., Gallo R.L., Henques-Normark B., Pütsep K., Andersson M., Glocker E.O., Hornet M.W.: Developmental switch of interstinal antimicrobial peptide expression. J. Exp. Med. 205, 183-193 (2008)
31. Mira A., Martin-Cuadrado A.B., D'Auria G., Rodriguez-Valera F.: The bacterial pan-genome: a new paradigm in microbiology. Int. Microbiol. 13, 45-57 (2010)
32. Morita H., Kuwahara T., Ohshima K., Sasamoto H., Hoh K., Hattori M., Hayashi T., Takami H.: An improved DNA isolation method for metagenomic analysis of the microbial flora of the human intestine. Microbes Environ. 22, 214-222 (2007)
33. Pallen M.J., Loman N.J., Penn Ch.W.: High-throughput sequencing and clinical microbiology: progress, opportunities and challenges. Curr. Opin. Microbiol. 13, 625-631 (2010)
34. Palmer C., Bik E.M., DiGiulio D.B., Relman D.A., Brown P.O.: Development of the human infant intestinal microbiota. PLoS Biol. 5, e177.doi:10.1371/ journal.pbio.0050177 (2007)
35. Pamer E.G.: Immune response to commensal and environmental microbes. Nat. Rev. Immunol. 8, 1173-1178 (2007)
36. Peterson D.A., McNulty N.P., Guruge J.L., Gordon J.I.: IgA response to symbiotic bacteria as a mediator of gut homeostasis. Cell Host Microbe, 2, 328-339 (2007)
37. Peterson D.A., Frank D.N., Pace N.R., Gordon J.I.: Metagenomic approaches for defining the pathogenesis of inflammatory bowel diseases. Cell Host Microbe, 3, 417-427 (2008)
38. Peterson J., Garges S., Giovanni M., McInnes P., Wang L., Schloss J.A., Bonazzi V., McEwen J.E., Wetterstrand K.A., Deal C., Baker C.C., Di Franesco V., Howcroft T.K., Karp R.W., Lunsford R.D., Wellington C.R., BelachewT., Wright M., Giblin C., David H., Mills M., Salomon R., Mullins C., Akolkar B., Begg L., Davis C., Grandison L., Humble M., Khalsa J., Little A.R., Peavy H., Pontzer C., Portnoy M., Sayre M.H., Starke-Reed P., Zakhari S., Read J., Watson B., Guyer M.: The NIH human microbiome project. Genome Res. 19, 2317-2323 (2009)
39. Rautava S., Walker W.A.: Commensal bacteria and epithelial cross talk in the developing intestine. Curr. Gastroenterol. Rep. 9, 385-392 (2007)
40. Reiff C., Kelly D.: Inflammatory bowel disease, gut bacteria and probiotic therapy. Int. J. Med. Microbiol. 300, 25-33 (2010)
41. Relman D.A.: New technologies, human-microbe interaction, and the search for previously unrecognized pathogens. J. Infect Dis. 186, S254-S258 (2002)
42. Round J.L., Lee S.M., Li J., Tran G., Jabri B., Chatila T.A., Mazmanian S.K.: The Toll-like receptor 2 pathway establishes colonization by a commensal of the human micreobiota. Science, 332, 974-977 (2011)
43. Savage D.C.: Microbial ecology of the gastrointestinal tract. Annu. Rev. Microbiol. 31, 107-133 (1977)
44. Seal J.B., Morowitz M., Zabornia O., An G., J.C. Alverdy.: The molecular Koch's postulates and surgical infection: a view forward. Surgery, 147, 757-765 (2010)
45. Shapiro J.A.: Bacteria are small but not stupid: cognition, natural genetic engineering and socio-bacteriology. Stud. Hist. Phi los.Biol. Biomed. Sci. 38, 807-819 (2007)
46. Stańkowska D., Kaca W.: Systemy komunikacji miedzykomó rkowej bakterii Gram-ujemnych i ich znaczenie w ekspresjii cech fenotypowych. Post. Mikrobiol. 44, 99-111 (2005)
47. Tyson G.W., Chapman J., Hugenholtz P., Allen E.E., Ram R.J., Richardson P.M., Solovyev V.V., Rubin E.M., Rokhsar D.S., Banfield J.E.: Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature, 428, 37-43 (2004)
48. Wehkamp J., Salzman N.H., Porter E., Nuding S., Weichenthal M., Petras R.E., Shen B., Schaeffeler E., Schab M., Linzmeier R., Feathers R.W., Chu H., Lima H., Fellermann K., Ganz T., Stange E.F., Bevins C.L.: Reduced Paneth cell α-defensins in ileal Crohn's disease. Proc. Natl. Acad. Sci. USA, 105, 1943-1948 (2005)
49. Woese C.R., Fox G.E.: Phylogenetic structure of the prokaryotic domain: The primary kingdom. Proc. Natl. Acad. Sci. USA, 74, 161-177 (1977)
50. Zaura E., Keijser B.J.F., Huse S.H., Crielaard W.: Defining the healthy "core microbiome" of oral microbial communities. BMC Microbiol. 9, 259-271 (2009)
51. Zoetendal E.G., Rajilic-Stojanovic M., de Vos W.M.: High throughput diversity and functionality analysis of the gastrointestinal tract microbiota. Gut, 57, 1605-1615 (2008)