-
1
-
-
0001251098
-
Iron in biology: A structural viewpoint
-
Lindley, P. F. (1996) Iron in biology: a structural viewpoint. Rep. Prog. Phys. 59, 867-933
-
(1996)
Rep. Prog. Phys.
, vol.59
, pp. 867-933
-
-
Lindley, P.F.1
-
2
-
-
0038579427
-
Bacterial iron homeostasis
-
DOI 10.1016/S0168-6445(03)00055-X
-
Andrews, S. C., Robinson, A. K., and Rodríguez-Quiñones, F. (2003) Bacterial iron homeostasis. FEMS Microbiol. Rev. 27, 215-237 (Pubitemid 36694657)
-
(2003)
FEMS Microbiology Reviews
, vol.27
, Issue.2-3
, pp. 215-237
-
-
Andrews, S.C.1
Robinson, A.K.2
Rodriguez-Quinones, F.3
-
3
-
-
33746683071
-
Siderophores of Bacillus anthracis, Bacillus cereus, and Bacillus thuringiensis
-
DOI 10.1016/j.bbrc.2006.07.055, PII S0006291X06016123
-
Wilson, M. K., Abergel, R. J., Raymond, K. N., Arceneaux, J. E., and Byers, B. R. (2006) Siderophores of Bacillus anthracis, Bacillus cereus, and Bacillus thuringiensis. Biochem. Biophys. Res. Commun. 348, 320-325 (Pubitemid 44163512)
-
(2006)
Biochemical and Biophysical Research Communications
, vol.348
, Issue.1
, pp. 320-325
-
-
Wilson, M.K.1
Abergel, R.J.2
Raymond, K.N.3
Arceneaux, J.E.L.4
Byers, B.R.5
-
4
-
-
77954615852
-
Siderophoremediated iron acquisition in Bacillus anthracis and related strains
-
Hotta, K., Kim, C. Y., Fox, D. T., and Koppisch, A. T. (2010) Siderophoremediated iron acquisition in Bacillus anthracis and related strains. Microbiology 156, 1918-1925
-
(2010)
Microbiology
, vol.156
, pp. 1918-1925
-
-
Hotta, K.1
Kim, C.Y.2
Fox, D.T.3
Koppisch, A.T.4
-
5
-
-
0035831486
-
The dhb operon of Bacillus subtilis encodes the biosynthetic template for the catecholic siderophore 2,3-dihydroxybenzoate-glycine-threonine trimeric ester bacillibactin
-
May, J. J., Wendrich, T. M., and Marahiel, M. A. (2001) The dhb operon of Bacillus subtilis encodes the biosynthetic template for the catecholic siderophore 2,3-dihydroxybenzoate-glycine-threonine trimeric ester bacillibactin. J. Biol. Chem. 276, 7209-7217
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 7209-7217
-
-
May, J.J.1
Wendrich, T.M.2
Marahiel, M.A.3
-
6
-
-
0942279513
-
Bacillus anthracis requires siderophore biosynthesis for growth in macrophages and mouse virulence
-
DOI 10.1046/j.1365-2958.2003.03861.x
-
Cendrowski, S., MacArthur, W., and Hanna, P. (2004) Bacillus anthracis requires siderophore biosynthesis for growth in macrophages and mouse virulence. Mol. Microbiol. 51, 407-417 (Pubitemid 38142130)
-
(2004)
Molecular Microbiology
, vol.51
, Issue.2
, pp. 407-417
-
-
Cendrowski, S.1
MacArthur, W.2
Hanna, P.3
-
7
-
-
29744459466
-
Petrobactin is the primary siderophore synthesized by Bacillus anthracis str. Sterne under conditions of iron starvation
-
DOI 10.1007/s10534-005-1782-6
-
Koppisch, A. T., Browder, C. C., Moe, A. L., Shelley, J. T., Kinkel, B. A., Hersman, L. E., Iyer, S., and Ruggiero, C. E. (2005) Petrobactin is the primary siderophore synthesized by Bacillus anthracis strain Sterne under conditions of iron starvation. Biometals 18, 577-585 (Pubitemid 43030279)
-
(2005)
BioMetals
, vol.18
, Issue.6
, pp. 577-585
-
-
Koppisch, A.T.1
Browder, C.C.2
Moe, A.L.3
Shelley, J.T.4
Kinkel, B.A.5
Hersman, L.E.6
Iyer, S.7
Ruggiero, C.E.8
-
8
-
-
77949423105
-
Temporal production of the two Bacillus anthracis siderophores, petrobactin and bacillibactin
-
Wilson, M. K., Abergel, R. J., Arceneaux, J. E., Raymond, K. N., and Byers, B. R. (2010) Temporal production of the two Bacillus anthracis siderophores, petrobactin and bacillibactin. Biometals 23, 129-134
-
(2010)
Biometals
, vol.23
, pp. 129-134
-
-
Wilson, M.K.1
Abergel, R.J.2
Arceneaux, J.E.3
Raymond, K.N.4
Byers, B.R.5
-
9
-
-
79958109910
-
Regulation of petrobactin and bacillibactin biosynthesis in Bacillus anthracis under iron and oxygen variation
-
Lee, J. Y., Passalacqua, K. D., Hanna, P. C., and Sherman, D. H. (2011) Regulation of petrobactin and bacillibactin biosynthesis in Bacillus anthracis under iron and oxygen variation. PLoS One 6, e20777
-
(2011)
PLoS One
, vol.6
-
-
Lee, J.Y.1
Passalacqua, K.D.2
Hanna, P.C.3
Sherman, D.H.4
-
10
-
-
55949087762
-
Structural and functional analysis of AsbF. Origin of the stealth 3,4-dihydroxybenzoic acid subunit for petrobactin biosynthesis
-
Pfleger, B. F., Kim, Y., Nusca, T. D., Maltseva, N., Lee, J. Y., Rath, C. M., Scaglione, J. B., Janes, B. K., Anderson, E. C., Bergman, N. H., Hanna, P. C., Joachimiak, A., and Sherman, D. H. (2008) Structural and functional analysis of AsbF. Origin of the stealth 3,4-dihydroxybenzoic acid subunit for petrobactin biosynthesis. Proc. Natl. Acad. Sci. U.S.A. 105, 17133-17138
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 17133-17138
-
-
Pfleger, B.F.1
Kim, Y.2
Nusca, T.D.3
Maltseva, N.4
Lee, J.Y.5
Rath, C.M.6
Scaglione, J.B.7
Janes, B.K.8
Anderson, E.C.9
Bergman, N.H.10
Hanna, P.C.11
Joachimiak, A.12
Sherman, D.H.13
-
11
-
-
33947394461
-
Biosynthetic analysis of the petrobactin siderophore pathway from Bacillus anthracis
-
DOI 10.1128/JB.01526-06
-
Lee, J. Y., Janes, B. K., Passalacqua, K. D., Pfleger, B. F., Bergman, N. H., Liu, H., Håkansson, K., Somu, R. V., Aldrich, C. C., Cendrowski, S., Hanna, P. C., and Sherman, D. H. (2007) Biosynthetic analysis of the petrobactin siderophore pathway from Bacillus anthracis. J. Bacteriol. 189, 1698-1710 (Pubitemid 46446132)
-
(2007)
Journal of Bacteriology
, vol.189
, Issue.5
, pp. 1698-1710
-
-
Lee, J.Y.1
Janes, B.K.2
Passalacqua, K.D.3
Pfleger, B.F.4
Bergman, N.H.5
Liu, H.6
Hakansson, K.7
Somu, R.V.8
Aldrich, C.C.9
Cendrowski, S.10
Hanna, P.C.11
Sherman, D.H.12
-
12
-
-
34447521947
-
Enzymatic logic of anthrax stealth siderophore biosynthesis: AsbA catalyzes ATP-dependent condensation of citric acid and spermidine
-
DOI 10.1021/ja072391o
-
Oves-Costales, D., Kadi, N., Fogg, M. J., Song, L., Wilson, K. S., and Challis, G. L. (2007) Enzymatic logic of anthrax stealth siderophore biosynthesis. AsbA catalyzes ATP-dependent condensation of citric acid and spermidine. J. Am. Chem. Soc. 129, 8416-8417 (Pubitemid 47066493)
-
(2007)
Journal of the American Chemical Society
, vol.129
, Issue.27
, pp. 8416-8417
-
-
Oves-Costales, D.1
Kadi, N.2
Fogg, M.J.3
Song, L.4
Wilson, K.S.5
Challis, G.L.6
-
13
-
-
34047214540
-
Characterization and analysis of early enzymes for petrobactin biosynthesis in Bacillus anthracis
-
DOI 10.1021/bi6023995
-
Pfleger, B. F., Lee, J. Y., Somu, R. V., Aldrich, C. C., Hanna, P. C., and Sherman, D. H. (2007) Characterization and analysis of early enzymes for petrobactin biosynthesis in Bacillus anthracis. Biochemistry 46, 4147-4157 (Pubitemid 46536076)
-
(2007)
Biochemistry
, vol.46
, Issue.13
, pp. 4147-4157
-
-
Pfleger, B.F.1
Lee, J.Y.2
Somu, R.V.3
Aldrich, C.C.4
Hanna, P.C.5
Sherman, D.H.6
-
14
-
-
56749146311
-
The missing link in petrobactin biosynthesis. AsbF encodes a (-)-3-dehydroshikimate dehydratase
-
Fox, D. T., Hotta, K., Kim, C. Y., and Koppisch, A. T. (2008) The missing link in petrobactin biosynthesis. asbF encodes a (-)-3-dehydroshikimate dehydratase. Biochemistry 47, 12251-12253
-
(2008)
Biochemistry
, vol.47
, pp. 12251-12253
-
-
Fox, D.T.1
Hotta, K.2
Kim, C.Y.3
Koppisch, A.T.4
-
15
-
-
51349084122
-
Petrobactin is produced by both pathogenic and non-pathogenic isolates of the Bacillus cereus group of bacteria
-
Koppisch, A. T., Dhungana, S., Hill, K. K., Boukhalfa, H., Heine, H. S., Colip, L. A., Romero, R. B., Shou, Y., Ticknor, L. O., Marrone, B. L., Hersman, L. E., Iyer, S., and Ruggiero, C. E. (2008) Petrobactin is produced by both pathogenic and non-pathogenic isolates of the Bacillus cereus group of bacteria. Biometals 21, 581-589
-
(2008)
Biometals
, vol.21
, pp. 581-589
-
-
Koppisch, A.T.1
Dhungana, S.2
Hill, K.K.3
Boukhalfa, H.4
Heine, H.S.5
Colip, L.A.6
Romero, R.B.7
Shou, Y.8
Ticknor, L.O.9
Marrone, B.L.10
Hersman, L.E.11
Iyer, S.12
Ruggiero, C.E.13
-
16
-
-
48249132813
-
Biosynthesis of the 3,4-dihydroxybenzoate moieties of petrobactin by Bacillus anthracis
-
Koppisch, A. T., Hotta, K., Fox, D. T., Ruggiero, C. E., Kim, C. Y., Sanchez, T., Iyer, S., Browder, C. C., Unkefer, P. J., and Unkefer, C. J. (2008) Biosynthesis of the 3,4-dihydroxybenzoate moieties of petrobactin by Bacillus anthracis. J. Org. Chem. 73, 5759-5765
-
(2008)
J. Org. Chem.
, vol.73
, pp. 5759-5765
-
-
Koppisch, A.T.1
Hotta, K.2
Fox, D.T.3
Ruggiero, C.E.4
Kim, C.Y.5
Sanchez, T.6
Iyer, S.7
Browder, C.C.8
Unkefer, P.J.9
Unkefer, C.J.10
-
17
-
-
50849126499
-
Petrobactin biosynthesis: AsbB catalyzes condensation of spermidine with N8-citryl-spermidine and its N1-(3,4-dihydroxybenzoyl) derivative
-
Oves-Costales, D., Kadi, N., Fogg, M. J., Song, L., Wilson, K. S., and Challis, G. L. (2008) Petrobactin biosynthesis: AsbB catalyzes condensation of spermidine with N8-citryl-spermidine and its N1-(3,4-dihydroxybenzoyl) derivative. Chem. Commun. (Camb), 4034-4036
-
(2008)
Chem. Commun. (Camb)
, pp. 4034-4036
-
-
Oves-Costales, D.1
Kadi, N.2
Fogg, M.J.3
Song, L.4
Wilson, K.S.5
Challis, G.L.6
-
18
-
-
61849152475
-
Enantioselective desymmetrization of citric acid catalysed by the substrate-tolerant petrobactin biosynthetic enzyme AsbA
-
Oves-Costales, D., Song, L., and Challis, G. L. (2009) Enantioselective desymmetrization of citric acid catalysed by the substrate-tolerant petrobactin biosynthetic enzyme AsbA. Chem. Commun. (Camb) 1389-1391
-
(2009)
Chem. Commun. (Camb)
, pp. 1389-1391
-
-
Oves-Costales, D.1
Song, L.2
Challis, G.L.3
-
19
-
-
77957352833
-
Jmol-a paradigm shift in crystallographic visualization
-
Hanson, R. M. (2010) Jmol-a paradigm shift in crystallographic visualization. J. Appl. Crystallogr. 43, 1250-1260
-
(2010)
J. Appl. Crystallogr.
, vol.43
, pp. 1250-1260
-
-
Hanson, R.M.1
-
20
-
-
65449162362
-
Siderophore-mediated iron acquisition systems in Bacillus cereus. Identification of receptors for anthrax virulence-associated petrobactin
-
Zawadzka, A. M., Abergel, R. J., Nichiporuk, R., Andersen, U. N., and Raymond, K. N. (2009) Siderophore-mediated iron acquisition systems in Bacillus cereus. Identification of receptors for anthrax virulence-associated petrobactin. Biochemistry 48, 3645-3657
-
(2009)
Biochemistry
, vol.48
, pp. 3645-3657
-
-
Zawadzka, A.M.1
Abergel, R.J.2
Nichiporuk, R.3
Andersen, U.N.4
Raymond, K.N.5
-
21
-
-
0037160369
-
Petrobactin, a photoreactive siderophore produced by the oil-degrading marine bacterium Marinobacter hydrocarbonoclasticus
-
DOI 10.1021/ja0119088
-
Barbeau, K., Zhang, G., Live, D. H., and Butler, A. (2002) Petrobactin, a photoreactive siderophore produced by the oil-degrading marine bacterium Marinobacter hydrocarbonoclasticus. J. Am. Chem. Soc. 124, 378-379 (Pubitemid 34084125)
-
(2002)
Journal of the American Chemical Society
, vol.124
, Issue.3
, pp. 378-379
-
-
Barbeau, K.1
Zhang, G.2
Live, D.H.3
Butler, A.4
-
22
-
-
34247192116
-
Collision-Activated Dissociation, Infrared Multiphoton Dissociation, and Electron Capture Dissociation of the Bacillus anthracis Siderophore Petrobactin and Its Metal Ion Complexes
-
DOI 10.1016/j.jasms.2007.01.005, PII S1044030507000359
-
Liu, H., Håkansson, K., Lee, J. Y., and Sherman, D. H. (2007) Collision-activated dissociation, infrared multiphoton dissociation, and electron capture dissociation of the Bacillus anthracis siderophore petrobactin and its metal ion complexes. J. Am. Soc. Mass. Spectrom. 18, 842-849 (Pubitemid 46617275)
-
(2007)
Journal of the American Society for Mass Spectrometry
, vol.18
, Issue.5
, pp. 842-849
-
-
Liu, H.1
Hakansson, K.2
Lee, J.Y.3
Sherman, D.H.4
-
23
-
-
21044449406
-
A widely distributed bacterial pathway for siderophore biosynthesis independent of nonribosomal peptide synthetases
-
Challis, G. L. (2005) A widely distributed bacterial pathway for siderophore biosynthesis independent of nonribosomal peptide synthetases. Chembiochem 6, 601-611
-
(2005)
Chembiochem
, vol.6
, pp. 601-611
-
-
Challis, G.L.1
-
24
-
-
65349174735
-
Recent advances in siderophore biosynthesis
-
Barry, S. M., and Challis, G. L. (2009) Recent advances in siderophore biosynthesis. Curr. Opin. Chem. Biol. 13, 205-215
-
(2009)
Curr. Opin. Chem. Biol.
, vol.13
, pp. 205-215
-
-
Barry, S.M.1
Challis, G.L.2
-
25
-
-
70350643410
-
The long-overlooked enzymology of a nonribosomal peptide synthetase-independent pathway for virulence-conferring siderophore biosynthesis
-
Oves-Costales, D., Kadi, N., and Challis, G. L. (2009) The long-overlooked enzymology of a nonribosomal peptide synthetase-independent pathway for virulence-conferring siderophore biosynthesis. Chem. Commun. (Camb), 6530-6541
-
(2009)
Chem. Commun. (Camb)
, pp. 6530-6541
-
-
Oves-Costales, D.1
Kadi, N.2
Challis, G.L.3
-
26
-
-
64249172679
-
Chapter 17. Siderophore biosynthesis a substrate specificity assay for nonribosomal peptide synthetase-independent siderophore synthetases involving trapping of acyl-adenylate intermediates with hydroxylamine
-
Kadi, N., and Challis, G. L. (2009) Chapter 17. Siderophore biosynthesis a substrate specificity assay for nonribosomal peptide synthetase-independent siderophore synthetases involving trapping of acyl-adenylate intermediates with hydroxylamine. Methods Enzymol. 458, 431-457
-
(2009)
Methods Enzymol.
, vol.458
, pp. 431-457
-
-
Kadi, N.1
Challis, G.L.2
-
27
-
-
33845504862
-
Anthrax pathogen evades the mammalian immune system through stealth siderophore production
-
DOI 10.1073/pnas.0607055103
-
Abergel, R. J., Wilson, M. K., Arceneaux, J. E., Hoette, T. M., Strong, R. K., Byers, B. R., and Raymond, K. N. (2006) Anthrax pathogen evades the mammalian immune system through stealth siderophore production. Proc. Natl. Acad. Sci. U.S.A. 103, 18499-18503 (Pubitemid 44913439)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.49
, pp. 18499-18503
-
-
Abergel, R.J.1
Wilson, M.K.2
Arceneaux, J.E.L.3
Hoette, T.M.4
Strong, R.K.5
Byers, B.R.6
Raymond, K.N.7
-
28
-
-
33646593180
-
How pathogenic bacteria evade mammalian sabotage in the battle for iron
-
DOI 10.1038/nchembio771, PII NCHEMBIO771
-
Fischbach, M. A., Lin, H., Liu, D. R., and Walsh, C. T. (2006) How pathogenic bacteria evade mammalian sabotage in the battle for iron. Nat. Chem. Biol. 2, 132-138 (Pubitemid 44323863)
-
(2006)
Nature Chemical Biology
, vol.2
, Issue.3
, pp. 132-138
-
-
Fischbach, M.A.1
Lin, H.2
Liu, D.R.3
Walsh, C.T.4
-
29
-
-
33748051446
-
Microbial evasion of the immune system: Structural modifications of enterobactin impair siderocalin recognition
-
DOI 10.1021/ja062476+
-
Abergel, R. J., Moore, E. G., Strong, R. K., and Raymond, K. N. (2006) Microbial evasion of the immune system. Structural modifications of enterobactin impair siderocalin recognition. J. Am. Chem. Soc. 128, 10998-10999 (Pubitemid 44300089)
-
(2006)
Journal of the American Chemical Society
, vol.128
, Issue.34
, pp. 10998-10999
-
-
Abergel, R.J.1
Moore, E.G.2
Strong, R.K.3
Raymond, K.N.4
-
30
-
-
39549120696
-
Petrobactin-mediated iron transport in pathogenic bacteria: Coordination chemistry of an unusual 3,4-catecholate/citrate siderophore
-
DOI 10.1021/ja077202g
-
Abergel, R. J., Zawadzka, A. M., and Raymond, K. N. (2008) Petrobactinmediated iron transport in pathogenic bacteria. Coordination chemistry of an unusual 3,4-catecholate/citrate siderophore. J. Am. Chem. Soc. 130, 2124-2125 (Pubitemid 351287966)
-
(2008)
Journal of the American Chemical Society
, vol.130
, Issue.7
, pp. 2124-2125
-
-
Abergel, R.J.1
Zawadzka, A.M.2
Raymond, K.N.3
-
31
-
-
76449089026
-
Genetic analysis of petrobactin transport in Bacillus anthracis
-
Carlson, P. E., Jr., Dixon, S. D., Janes, B. K., Carr, K. A., Nusca, T. D., Anderson, E. C., Keene, S. E., Sherman, D. H., and Hanna, P. C. (2010) Genetic analysis of petrobactin transport in Bacillus anthracis. Mol. Microbiol. 75, 900-909
-
(2010)
Mol. Microbiol.
, vol.75
, pp. 900-909
-
-
Carlson Jr., P.E.1
Dixon, S.D.2
Janes, B.K.3
Carr, K.A.4
Nusca, T.D.5
Anderson, E.C.6
Keene, S.E.7
Sherman, D.H.8
Hanna, P.C.9
-
32
-
-
0000435509
-
Colorimetric Determination of the Components of 3,4- dihydroxyphenylalaninetyrosine mixtures
-
Arnow, L. E. (1937) Colorimetric Determination of the Components of 3,4-dihydroxyphenylalaninetyrosine mixtures J. Biol. Chem. 118, 531-537
-
(1937)
J. Biol. Chem.
, vol.118
, pp. 531-537
-
-
Arnow, L.E.1
-
33
-
-
0036926615
-
A new vector for high-throughput, ligation-independent cloning encoding a tobacco etch virus protease cleavage site
-
DOI 10.1006/prep.2001.1603
-
Stols, L., Gu, M., Dieckman, L., Raffen, R., Collart, F. R., and Donnelly, M. I. (2002) A new vector for high-throughput, ligation-independent cloning encoding a tobacco etch virus protease cleavage site. Protein Expr. Purif. 25, 8-15 (Pubitemid 36034995)
-
(2002)
Protein Expression and Purification
, vol.25
, Issue.1
, pp. 8-15
-
-
Stols, L.1
Gu, M.2
Dieckman, L.3
Raffen, R.4
Collart, F.R.5
Donnelly, M.I.6
-
34
-
-
77951296508
-
Cleavable C-terminal Histag vectors for structure determination
-
Eschenfeldt, W. H., Maltseva, N., Stols, L., Donnelly, M. I., Gu, M., Nocek, B., Tan, K., Kim, Y., and Joachimiak, A. (2010) Cleavable C-terminal Histag vectors for structure determination. J. Struct. Funct. Genomics 11, 31-39
-
(2010)
J. Struct. Funct. Genomics
, vol.11
, pp. 31-39
-
-
Eschenfeldt, W.H.1
Maltseva, N.2
Stols, L.3
Donnelly, M.I.4
Gu, M.5
Nocek, B.6
Tan, K.7
Kim, Y.8
Joachimiak, A.9
-
35
-
-
0027439390
-
Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin
-
DOI 10.1006/jmbi.1993.1012
-
Van Duyne, G. D., Standaert, R. F., Karplus, P. A., Schreiber, S. L., and Clardy, J. (1993) Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin. J. Mol. Biol. 229, 105-124 (Pubitemid 23037917)
-
(1993)
Journal of Molecular Biology
, vol.229
, Issue.1
, pp. 105-124
-
-
Van Duyne, G.D.1
Standaert, R.F.2
Karplus, P.A.3
Schreiber, S.L.4
Clardy, J.5
-
36
-
-
0033213109
-
MAD data collection - Current trends
-
DOI 10.1107/S0907444999008392
-
Walsh, M. A., Evans, G., Sanishvili, R., Dementieva, I., and Joachimiak, A. (1999) MAD data collection. Current trends. Acta Crystallogr. D Biol. Crystallogr. 55, 1726-1732 (Pubitemid 29504427)
-
(1999)
Acta Crystallographica Section D: Biological Crystallography
, vol.55
, Issue.10
, pp. 1726-1732
-
-
Walsh, M.A.1
Evans, G.2
Sanishvili, R.3
Dementieva, I.4
Joachimiak, A.5
-
37
-
-
3543140128
-
Automation of protein purification for structural genomics
-
DOI 10.1023/B:JSFG.0000029206.07778.fc
-
Kim, Y., Dementieva, I., Zhou, M., Wu, R., Lezondra, L., Quartey, P., Joachimiak, G., Korolev, O., Li, H., and Joachimiak, A. (2004) Automation of protein purification for structural genomics. J. Struct. Funct. Genomics. 5, 111-118 (Pubitemid 39030627)
-
(2004)
Journal of Structural and Functional Genomics
, vol.5
, Issue.1-2
, pp. 111-118
-
-
Kim, Y.1
Dementieva, I.2
Zhou, M.3
Wu, R.4
Lezondra, L.5
Quartey, P.6
Joachimiak, G.7
Korolev, O.8
Li, H.9
Joachimiak, A.10
-
38
-
-
33745933955
-
HKL-3000: The integration of data reduction and structure solution - From diffraction images to an initial model in minutes
-
DOI 10.1107/S0907444906019949
-
Minor, W., Cymborowski, M., Otwinowski, Z., and Chruszcz, M. (2006) HKL-3000. The integration of data reduction and structure solution. From diffraction images to an initial model in minutes. Acta Crystallogr.D Biol. Crystallogr. 62, 859-866 (Pubitemid 44125661)
-
(2006)
Acta Crystallographica Section D: Biological Crystallography
, vol.62
, Issue.8
, pp. 859-866
-
-
Minor, W.1
Cymborowski, M.2
Otwinowski, Z.3
Chruszcz, M.4
-
39
-
-
0242460576
-
Generation, representation and flow of phase information in structure determination: Recent developments in and around SHARP 2.0
-
DOI 10.1107/S0907444903017694
-
Bricogne, G., Vonrhein, C., Flensburg, C., Schiltz, M., and Paciorek, W. (2003) Generation, representation and flow of phase information in structure determination. Recent developments in and around SHARP 2.0. Acta Crystallogr. D Biol. Crystallogr. 59, 2023-2030 (Pubitemid 37399336)
-
(2003)
Acta Crystallographica Section D: Biological Crystallography
, vol.59
, Issue.11
, pp. 2023-2030
-
-
Bricogne, G.1
Vonrhein, C.2
Flensburg, C.3
Schiltz, M.4
Paciorek, W.5
-
40
-
-
0347383760
-
ARP/wARP and Automatic Interpretation of Protein Electron Density Maps
-
DOI 10.1016/S0076-6879(03)74011-7
-
Morris, R. J., Perrakis, A., and Lamzin, V. S. (2003) ARP/wARP and automatic interpretation of protein electron density maps. Methods Enzymol. 374, 229-244 (Pubitemid 37531812)
-
(2003)
Methods in Enzymology
, vol.374
, pp. 229-244
-
-
Morris, R.J.1
Perrakis, A.2
Lamzin, V.S.3
-
41
-
-
76449098262
-
PHENIX. A comprehensive Python-based system for macromolecular structure solution
-
Adams, P. D., Afonine, P. V., Bunkóczi, G., Chen, V. B., Davis, I. W., Echols, N., Headd, J. J., Hung, L. W., Kapral, G. J., Grosse-Kunstleve, R. W., Mc-Coy, A. J., Moriarty, N. W., Oeffner, R., Read, R. J., Richardson, D. C., Richardson, J. S., Terwilliger, T. C., and Zwart, P. H. (2010) PHENIX. A comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D Biol. Crystallogr. 66, 213-221
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkóczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
Mc-Coy, A.J.11
Moriarty, N.W.12
Oeffner, R.13
Read, R.J.14
Richardson, D.C.15
Richardson, J.S.16
Terwilliger, T.C.17
Zwart, P.H.18
-
43
-
-
0000243829
-
PROCHECK-a program to check the stereochemical quality of protein structures
-
Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) PROCHECK-a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26, 283-291
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
44
-
-
77954086090
-
A continuous kinetic assay for adenylation enzyme activity and inhibition
-
Wilson, D. J., and Aldrich, C. C. (2010) A continuous kinetic assay for adenylation enzyme activity and inhibition. Anal. Biochem. 404, 56-63
-
(2010)
Anal. Biochem.
, vol.404
, pp. 56-63
-
-
Wilson, D.J.1
Aldrich, C.C.2
-
45
-
-
0030561461
-
A spectrophotometric method to measure enzymatic activity in reactions that generate inorganic pyrophosphate
-
DOI 10.1006/abio.1996.0479
-
Upson, R. H., Haugland, R. P., Malekzadeh, M. N., and Haugland, R. P. (1996) A spectrophotometric method to measure enzymatic activity in reactions that generate inorganic pyrophosphate. Anal. Biochem. 243, 41-45 (Pubitemid 26418574)
-
(1996)
Analytical Biochemistry
, vol.243
, Issue.1
, pp. 41-45
-
-
Upson, R.H.1
Haugland, R.P.2
Malekzadeh, M.N.3
Haugland, R.P.4
-
46
-
-
55949116986
-
Purification, crystallization, and data collection of Pectobacterium chrysanthemi AcsD, a type A siderophore synthetase
-
McMahon, S. A., Oke, M., Liu, H., Johnson, K. A., Carter, L., Kadi, N., White, M. F., Challis, G. L., and Naismith, J. H. (2008) Purification, crystallization, and data collection of Pectobacterium chrysanthemi AcsD, a type A siderophore synthetase. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 64, 1052-1055
-
(2008)
Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun.
, vol.64
, pp. 1052-1055
-
-
McMahon, S.A.1
Oke, M.2
Liu, H.3
Johnson, K.A.4
Carter, L.5
Kadi, N.6
White, M.F.7
Challis, G.L.8
Naismith, J.H.9
-
47
-
-
60249096190
-
AcsD catalyzes enantioselective citrate desymmetrization in siderophore biosynthesis
-
Schmelz, S., Kadi, N., McMahon, S. A., Song, L., Oves-Costales, D., Oke, M., Liu, H., Johnson, K. A., Carter, L. G., Botting, C. H., White, M. F., Challis, G. L., and Naismith, J. H. (2009) AcsD catalyzes enantioselective citrate desymmetrization in siderophore biosynthesis. Nat. Chem. Biol. 5, 174-182
-
(2009)
Nat. Chem. Biol.
, vol.5
, pp. 174-182
-
-
Schmelz, S.1
Kadi, N.2
McMahon, S.A.3
Song, L.4
Oves-Costales, D.5
Oke, M.6
Liu, H.7
Johnson, K.A.8
Carter, L.G.9
Botting, C.H.10
White, M.F.11
Challis, G.L.12
Naismith, J.H.13
-
48
-
-
77956754865
-
The Scottish Structural Proteomics Facility. Targets, methods, and outputs
-
Oke, M., Carter, L. G., Johnson, K. A., Liu, H., McMahon, S. A., Yan, X., Kerou, M., Weikart, N. D., Kadi, N., Sheikh, M. A., Schmelz, S., Dorward, M., Zawadzki, M., Cozens, C., Falconer, H., Powers, H., Overton, I. M., van Niekerk, C. A., Peng, X., Patel, P., Garrett, R. A., Prangishvili, D., Botting, C. H., Coote, P. J., Dryden, D. T., Barton, G. J., Schwarz-Linek, U., Challis, G. L., Taylor, G. L., White, M. F., and Naismith, J. H. (2010) The Scottish Structural Proteomics Facility. Targets, methods, and outputs. J. Struct. Funct. Genomics 11, 167-180
-
(2010)
J. Struct. Funct. Genomics
, vol.11
, pp. 167-180
-
-
Oke, M.1
Carter, L.G.2
Johnson, K.A.3
Liu, H.4
McMahon, S.A.5
Yan, X.6
Kerou, M.7
Weikart, N.D.8
Kadi, N.9
Sheikh, M.A.10
Schmelz, S.11
Dorward, M.12
Zawadzki, M.13
Cozens, C.14
Falconer, H.15
Powers, H.16
Overton, I.M.17
Van Niekerk, C.A.18
Peng, X.19
Patel, P.20
Garrett, R.A.21
Prangishvili, D.22
Botting, C.H.23
Coote, P.J.24
Dryden, D.T.25
Barton, G.J.26
Schwarz-Linek, U.27
Challis, G.L.28
Taylor, G.L.29
White, M.F.30
Naismith, J.H.31
more..
-
49
-
-
12344310625
-
Erwinia chrysanthemi requires a second iron transport route dependent of the siderophore achromobactin for extracellular growth and plant infection
-
DOI 10.1111/j.1365-2958.2004.04383.x
-
Franza, T., Mahé, B., and Expert, D. (2005) Erwinia chrysanthemi requires a second iron transport route dependent of the siderophore achromobactin for extracellular growth and plant infection. Mol. Microbiol. 55, 261-275 (Pubitemid 40127901)
-
(2005)
Molecular Microbiology
, vol.55
, Issue.1
, pp. 261-275
-
-
Franza, T.1
Mahe, B.2
Expert, D.3
-
50
-
-
67650318505
-
Analysis of achromobactin biosynthesis by Pseudomonas syringae pv. syringae B728a
-
Berti, A. D., and Thomas, M. G. (2009) Analysis of achromobactin biosynthesis by Pseudomonas syringae pv. syringae B728a. J. Bacteriol. 191, 4594-4604
-
(2009)
J. Bacteriol.
, vol.191
, pp. 4594-4604
-
-
Berti, A.D.1
Thomas, M.G.2
-
51
-
-
80052365892
-
Structural basis for acyl acceptor specificity in the achromobactin biosynthetic enzyme AcsD
-
Schmelz, S., Botting, C. H., Song, L., Kadi, N. F., Challis, G. L., and Naismith, J. H. (2011) Structural basis for acyl acceptor specificity in the achromobactin biosynthetic enzyme AcsD. J. Mol. Biol. 412, 495-504
-
(2011)
J. Mol. Biol.
, vol.412
, pp. 495-504
-
-
Schmelz, S.1
Botting, C.H.2
Song, L.3
Kadi, N.F.4
Challis, G.L.5
Naismith, J.H.6
-
52
-
-
22544486576
-
Protein function prediction using local 3D templates
-
DOI 10.1016/j.jmb.2005.05.067, PII S0022283605006340
-
Laskowski, R. A., Watson, J. D., and Thornton, J. M. (2005) Protein function prediction using local three-dimensional templates. J. Mol. Biol. 351, 614-626 (Pubitemid 41021944)
-
(2005)
Journal of Molecular Biology
, vol.351
, Issue.3
, pp. 614-626
-
-
Laskowski, R.A.1
Watson, J.D.2
Thornton, J.M.3
-
53
-
-
39449115394
-
I-TASSER server for protein three-dimensional structure prediction
-
Zhang, Y. (2008) I-TASSER server for protein three-dimensional structure prediction. BMC Bioinformatics 9, 40
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 40
-
-
Zhang, Y.1
-
54
-
-
77954065271
-
I-TASSER. A unified platform for automated protein structure and function prediction
-
Roy, A., Kucukural, A., and Zhang, Y. (2010) I-TASSER. A unified platform for automated protein structure and function prediction. Nat. Protoc. 5, 725-738
-
(2010)
Nat. Protoc.
, vol.5
, pp. 725-738
-
-
Roy, A.1
Kucukural, A.2
Zhang, Y.3
-
55
-
-
67651216105
-
Siderophore production by marine-derived fungi
-
Holinsworth, B., and Martin, J. (2009) Siderophore production by marine-derived fungi. Biometals 22, 625-632
-
(2009)
Biometals
, vol.22
, pp. 625-632
-
-
Holinsworth, B.1
Martin, J.2
-
56
-
-
70350430681
-
Molecular characterization of staphyloferrin B biosynthesis in Staphylococcus aureus
-
Cheung, J., Beasley, F. C., Liu, S., Lajoie, G. A., and Heinrichs, D. E. (2009) Molecular characterization of staphyloferrin B biosynthesis in Staphylococcus aureus. Mol. Microbiol. 74, 594-608
-
(2009)
Mol. Microbiol.
, vol.74
, pp. 594-608
-
-
Cheung, J.1
Beasley, F.C.2
Liu, S.3
Lajoie, G.A.4
Heinrichs, D.E.5
-
57
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994) ClustalW. Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680 (Pubitemid 24354800)
-
(1994)
Nucleic Acids Research
, vol.22
, Issue.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
58
-
-
33845437048
-
Structural and biological characterization of one antibacterial acylpolyamine isolated from the hemocytes of the spider Acanthocurria gomesiana
-
DOI 10.1016/j.bbrc.2006.11.128, PII S0006291X06026179
-
Pereira, L. S., Silva, P. I., Jr., Miranda, M. T., Almeida, I. C., Naoki, H., Konno, K., and Daffre, S. (2007) Structural and biological characterization of one antibacterial acylpolyamine isolated from the hemocytes of the spider Acanthocurria gomesiana. Biochem. Biophys. Res. Commun. 352, 953-959 (Pubitemid 44894377)
-
(2007)
Biochemical and Biophysical Research Communications
, vol.352
, Issue.4
, pp. 953-959
-
-
Pereira, L.S.1
Silva Jr., P.I.2
Miranda, M.T.M.3
Almeida, I.C.4
Naoki, H.5
Konno, K.6
Daffre, S.7
-
59
-
-
0016439452
-
The identification and biosynthesis of siderochromes formed by Micrococcus denitrificans
-
Tait, G. H. (1975) The identification and biosynthesis of siderochromes formed by Micrococcus denitrificans. Biochem. J. 146, 191-204
-
(1975)
Biochem. J.
, vol.146
, pp. 191-204
-
-
Tait, G.H.1
-
60
-
-
0029816603
-
In vitro activities of novel catecholate siderophores against Plasmodium falciparum
-
Pradines, B., Ramiandrasoa, F., Basco, L. K., Bricard, L., Kunesch, G., and Le Bras, J. (1996) In vitro activities of novel catecholate siderophores against Plasmodium falciparum. Antimicrob. Agents Chemother. 40, 2094-2098 (Pubitemid 26296253)
-
(1996)
Antimicrobial Agents and Chemotherapy
, vol.40
, Issue.9
, pp. 2094-2098
-
-
Pradines, B.1
Ramiandrasoa, F.2
Basco, L.K.3
Bricard, L.4
Kunesch, G.5
Le, B.J.6
-
61
-
-
75749092644
-
Microbial threat lists. Obstacles in the quest for biosecurity?
-
Casadevall, A., and Relman, D. A. (2010) Microbial threat lists. Obstacles in the quest for biosecurity? Nat. Rev. Microbiol. 8, 149-154
-
(2010)
Nat. Rev. Microbiol.
, vol.8
, pp. 149-154
-
-
Casadevall, A.1
Relman, D.A.2
-
62
-
-
70350292553
-
Medical countermeasures to protect humans from anthrax bioterrorism
-
Bouzianas, D. G. (2009) Medical countermeasures to protect humans from anthrax bioterrorism. Trends Microbiol. 17, 522-528
-
(2009)
Trends Microbiol.
, vol.17
, pp. 522-528
-
-
Bouzianas, D.G.1
-
63
-
-
0036671457
-
Problems associated with potential massive use of antimicrobial agents as prophylaxis or therapy of a bioterrorist attack
-
Navas, E. (2002) Problems associated with potential massive use of antimicrobial agents as prophylaxis or therapy of a bioterrorist attack. Clin. Microbiol. Infect. 8, 534-539
-
(2002)
Clin. Microbiol. Infect.
, vol.8
, pp. 534-539
-
-
Navas, E.1
-
64
-
-
37349002541
-
The biology and future prospects of antivirulence therapies
-
DOI 10.1038/nrmicro1818, PII NRMICRO1818
-
Cegelski, L., Marshall, G. R., Eldridge, G. R., and Hultgren, S. J. (2008) The biology and future prospects of antivirulence therapies. Nat. Rev. Microbiol. 6, 17-27 (Pubitemid 350286217)
-
(2008)
Nature Reviews Microbiology
, vol.6
, Issue.1
, pp. 17-27
-
-
Cegelski, L.1
Marshall, G.R.2
Eldridge, G.R.3
Hultgren, S.J.4
-
65
-
-
78049279393
-
Biochemical and structural characterization of bisubstrate inhibitors of BasE, the self-standing nonribosomal peptide synthetase adeny-late-forming enzyme of acinetobactin synthesis
-
Drake, E. J., Duckworth, B. P., Neres, J., Aldrich, C. C., and Gulick, A. M. (2010) Biochemical and structural characterization of bisubstrate inhibitors of BasE, the self-standing nonribosomal peptide synthetase adeny-late-forming enzyme of acinetobactin synthesis. Biochemistry 49, 9292-9305
-
(2010)
Biochemistry
, vol.49
, pp. 9292-9305
-
-
Drake, E.J.1
Duckworth, B.P.2
Neres, J.3
Aldrich, C.C.4
Gulick, A.M.5
-
66
-
-
57349154252
-
Inhibition of siderophore biosynthesis by 2-triazole substituted analogues of 5′-O-[N-(salicyl)sulfamoyl] adenosine. Antibacterial nucleosides effective against Mycobacterium tuberculosis
-
Gupte, A., Boshoff, H. I., Wilson, D. J., Neres, J., Labello, N. P., Somu, R. V., Xing, C., Barry, C. E., and Aldrich, C. C. (2008) Inhibition of siderophore biosynthesis by 2-triazole substituted analogues of 5′-O-[N-(salicyl)sulfamoyl] adenosine. Antibacterial nucleosides effective against Mycobacterium tuberculosis. J. Med. Chem. 51, 7495-7507
-
(2008)
J. Med. Chem.
, vol.51
, pp. 7495-7507
-
-
Gupte, A.1
Boshoff, H.I.2
Wilson, D.J.3
Neres, J.4
Labello, N.P.5
Somu, R.V.6
Xing, C.7
Barry, C.E.8
Aldrich, C.C.9
-
67
-
-
34548739613
-
Siderophore-based iron acquisition and pathogen control
-
DOI 10.1128/MMBR.00012-07
-
Miethke, M., and Marahiel, M. A. (2007) Siderophore-based iron acquisition and pathogen control. Microbiol. Mol. Biol. Rev. 71, 413-451 (Pubitemid 47429279)
-
(2007)
Microbiology and Molecular Biology Reviews
, vol.71
, Issue.3
, pp. 413-451
-
-
Miethke, M.1
Marahiel, M.A.2
-
68
-
-
67651247638
-
Siderophores as drug delivery agents. Application of the "Trojan Horse" strategy
-
Möllmann, U., Heinisch, L., Bauernfeind, A., Köhler, T., and Ankel-Fuchs, D. (2009) Siderophores as drug delivery agents. Application of the "Trojan Horse" strategy. Biometals 22, 615-624
-
(2009)
Biometals
, vol.22
, pp. 615-624
-
-
Möllmann, U.1
Heinisch, L.2
Bauernfeind, A.3
Köhler, T.4
Ankel-Fuchs, D.5
-
69
-
-
13444307044
-
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
-
DOI 10.1107/S0907444904026460
-
Krissinel, E., and Henrick, K. (2004) Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr. D Biol. Crystallogr. 60, 2256-2268 (Pubitemid 41742778)
-
(2004)
Acta Crystallographica Section D: Biological Crystallography
, vol.60
, Issue.12 I
, pp. 2256-2268
-
-
Krissinel, E.1
Henrick, K.2
-
70
-
-
22544441094
-
ProFunc: A server for predicting protein function from 3D structure
-
DOI 10.1093/nar/gki414
-
Laskowski, R. A., Watson, J. D., and Thornton, J. M. (2005) ProFunc. A server for predicting protein function from three-dimensional structure. Nucleic Acids Res. 33, W89-W93 (Pubitemid 44529886)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.WEB. SERV. ISS.
-
-
Laskowski, R.A.1
Watson, J.D.2
Thornton, J.M.3
|