-
1
-
-
0029868304
-
Locating and characterizing binding sites on proteins
-
Mattos C., and Ringe D. Locating and characterizing binding sites on proteins Nat. Biotechnol. 14 1996 595 599 (Pubitemid 26135122)
-
(1996)
Nature Biotechnology
, vol.14
, Issue.5
, pp. 595-599
-
-
Mattos, C.1
Ringe, D.2
-
2
-
-
12344318177
-
Fragment-based lead discovery using X-ray crystallography
-
DOI 10.1021/jm0495778
-
Hartshorn M.J., Murray C.W., Cleasby A., Frederickson M., Tickle I.J., and Jhoti H. Fragment-based lead discovery using X-ray crystallography J. Med. Chem. 48 2005 403 413 (Pubitemid 40139783)
-
(2005)
Journal of Medicinal Chemistry
, vol.48
, Issue.2
, pp. 403-413
-
-
Hartshorn, M.J.1
Murray, C.W.2
Cleasby, A.3
Frederickson, M.4
Tickle, I.J.5
Jhoti, H.6
-
3
-
-
33947612966
-
Application of fragment screening by X-ray crystallography to β-secretase
-
DOI 10.1021/jm0611962
-
Murray C.W., Callaghan O., Chessari G., Cleasby A., Congreve M., and Frederickson M. Application of fragment screening by X-ray crystallography to β-secretase J. Med. Chem. 50 2007 1116 1123 (Pubitemid 46496312)
-
(2007)
Journal of Medicinal Chemistry
, vol.50
, Issue.6
, pp. 1116-1123
-
-
Murray, C.W.1
Callaghan, O.2
Chessari, G.3
Cleasby, A.4
Congreve, M.5
Frederickson, M.6
Hartshorn, M.J.7
McMenamin, R.8
Patel, S.9
Wallis, N.10
-
4
-
-
33749262286
-
Using fragment cocktail crystallography to assist inhibitor design of Trypanosoma brucei nucleoside 2-deoxyribosyltransferase
-
DOI 10.1021/jm060429m
-
Bosch J., Robien M.A., Mehlin C., Boni E., Riechers A., and Buckner F.S. Using fragment cocktail crystallography to assist inhibitor design of Trypanosoma brucei nucleoside 2-deoxyribosyltransferase J. Med. Chem. 49 2006 5939 5946 (Pubitemid 44484940)
-
(2006)
Journal of Medicinal Chemistry
, vol.49
, Issue.20
, pp. 5939-5946
-
-
Bosch, J.1
Robien, M.A.2
Mehlin, C.3
Boni, E.4
Riechers, A.5
Buckner, F.S.6
Van Voorhis, W.C.7
Myler, P.J.8
Worthey, E.A.9
DeTitta, G.10
Luft, J.R.11
Lauricella, A.12
Gulde, S.13
Anderson, L.A.14
Kalyuzhniy, O.15
Neely, H.M.16
Ross, J.17
Earnest, T.N.18
Soltis, M.19
Schoenfeld, L.20
Zucker, F.21
Merritt, E.A.22
Fan, E.23
Verlinde, C.L.M.J.24
Hol, W.G.J.25
more..
-
6
-
-
77949535720
-
Features and development of Coot
-
Emsley P., Lohkamp B., Scott W.G., and Cowtan K. Features and development of Coot Acta Crystallogr., Sect. D: Biol. Crystallogr. 66 2010 486 501
-
(2010)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
7
-
-
0035022345
-
X-ligand: An application for the automated addition of flexible ligands into electron density
-
DOI 10.1107/S0907444901003894
-
Oldfield T.J. X-LIGAND: an application for the automated addition of flexible ligands into electron density Acta Crystallogr., Sect. D: Biol. Crystallogr. 57 2001 696 705 (Pubitemid 32418105)
-
(2001)
Acta Crystallographica Section D: Biological Crystallography
, vol.57
, Issue.5
, pp. 696-705
-
-
Oldfield, T.J.1
-
8
-
-
33746414835
-
Automated ligand fitting by core-fragment fitting and extension into density
-
DOI 10.1107/S0907444906017161
-
Terwilliger T.C., Klei H., Adams P.D., Moriarty N.W., and Cohn J.D. Automated ligand fitting by core-fragment fitting and extension into density Acta Crystallogr., Sect. D: Biol. Crystallogr. 62 2006 915 922 (Pubitemid 44125669)
-
(2006)
Acta Crystallographica Section D: Biological Crystallography
, vol.62
, Issue.8
, pp. 915-922
-
-
Terwilliger, T.C.1
Klei, H.2
Adams, P.D.3
Moriarty, N.W.4
Cohn, J.D.5
-
10
-
-
33846413234
-
Assessment of automatic ligand building in ARP/wARP
-
Evrard G.X., Langer G.G., Perrakis A., and Lamzin V.S. Assessment of automatic ligand building in ARP/wARP Acta Crystallogr., Sect. D: Biol. Crystallogr. 63 2007 108 117
-
(2007)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.63
, pp. 108-117
-
-
Evrard, G.X.1
Langer, G.G.2
Perrakis, A.3
Lamzin, V.S.4
-
11
-
-
32944458334
-
Automated crystallographic ligand building using the medial axis transform of an electron-density isosurface
-
DOI 10.1107/S0907444905023152
-
Aishima J., Russel D.S., Guibas L.J., Adams P.D., and Brunger A.T. Automated crystallographic ligand building using the medial axis transform of an electron-density isosurface Acta Crystallogr., Sect. D: Biol. Crystallogr. 61 2005 1354 1363 (Pubitemid 43943134)
-
(2005)
Acta Crystallographica Section D: Biological Crystallography
, vol.61
, Issue.10
, pp. 1354-1363
-
-
Aishima, J.1
Russel, D.S.2
Guibas, L.J.3
Adams, P.D.4
Brunger, A.T.5
-
12
-
-
77951296316
-
Assisted assignment of ligands corresponding to unknown electron density
-
Binkowski T.A., Cuff M., Nocek B., Chang C., and Joachimiak A. Assisted assignment of ligands corresponding to unknown electron density J. Struct. Funct. Genomics 11 2010 21 30
-
(2010)
J. Struct. Funct. Genomics
, vol.11
, pp. 21-30
-
-
Binkowski, T.A.1
Cuff, M.2
Nocek, B.3
Chang, C.4
Joachimiak, A.5
-
13
-
-
0033954256
-
The Protein Data Bank
-
Berman H.M., Westbrook J., Feng Z., Gilliland G., Bhat T.N., and Weissig H. The Protein Data Bank Nucleic Acids Res. 28 2000 235 242 (Pubitemid 30047768)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
14
-
-
0036135747
-
Protein-ligand recognition using spherical harmonic molecular surfaces: Towards a fast and efficient filter for large virtual throughput screening
-
DOI 10.1016/S1093-3263(01)00134-6, PII S1093326301001346
-
Cai W., Shao X., and Maigret B. Protein-ligand recognition using spherical harmonic molecular surfaces: towards a fast and efficient filter for large virtual throughput screening J. Mol. Graphics Modell. 20 2002 313 328 (Pubitemid 34019229)
-
(2002)
Journal of Molecular Graphics and Modelling
, vol.20
, Issue.4
, pp. 313-328
-
-
Cai, W.1
Shao, X.2
Maigret, B.3
-
15
-
-
19544389524
-
Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons
-
DOI 10.1093/bioinformatics/bti337
-
Morris R.J., Najmanovich R.J., Kahraman A., and Thornton J.M. Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons Bioinformatics 21 2005 2347 2355 (Pubitemid 40731589)
-
(2005)
Bioinformatics
, vol.21
, Issue.10
, pp. 2347-2355
-
-
Morris, R.J.1
Najmanovich, R.J.2
Kahraman, A.3
Thornton, J.M.4
-
16
-
-
61749091910
-
The application of 3D Zernike moments for the description of "model-free" molecular structure, functional motion, and structural reliability
-
Grandison S., Roberts C., and Morris R.J. The application of 3D Zernike moments for the description of "model-free" molecular structure, functional motion, and structural reliability J. Comput. Biol. 16 2009 487 500
-
(2009)
J. Comput. Biol.
, vol.16
, pp. 487-500
-
-
Grandison, S.1
Roberts, C.2
Morris, R.J.3
-
17
-
-
76749110379
-
Application of 3D Zernike descriptors to shape-based ligand similarity searching
-
Venkatraman V., Chakravarthy P.R., and Kihara D. Application of 3D Zernike descriptors to shape-based ligand similarity searching J. Cheminf. 1 2009 19
-
(2009)
J. Cheminf.
, vol.1
, pp. 19
-
-
Venkatraman, V.1
Chakravarthy, P.R.2
Kihara, D.3
-
18
-
-
50249136103
-
Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7
-
Langer G., Cohen S.X., Lamzin V.S., and Perrakis A. Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7 Nat. Protoc. 3 2008 1171 1179
-
(2008)
Nat. Protoc.
, vol.3
, pp. 1171-1179
-
-
Langer, G.1
Cohen, S.X.2
Lamzin, V.S.3
Perrakis, A.4
-
19
-
-
0005304768
-
False detail in three-dimensional Fourier representations of crystal structures
-
James R.W. False detail in three-dimensional Fourier representations of crystal structures Acta Crystallogr. 1 1948 132 134
-
(1948)
Acta Crystallogr.
, vol.1
, pp. 132-134
-
-
James, R.W.1
-
20
-
-
0005401768
-
Resolution revisited: Limit of detail in electron density maps
-
Stenkamp R.E., and Jensen L.H. Resolution revisited: limit of detail in electron density maps Acta Crystallogr. 40 1984 251 254
-
(1984)
Acta Crystallogr.
, vol.40
, pp. 251-254
-
-
Stenkamp, R.E.1
Jensen, L.H.2
-
21
-
-
0036606483
-
Principles of docking: An overview of search algorithms and a guide to scoring functions
-
DOI 10.1002/prot.10115
-
Halperin I., Ma B., Wolfson H., and Nussinov R. Principles of docking: an overview of search algorithms and a guide to scoring functions Proteins 47 2002 409 443 (Pubitemid 34614722)
-
(2002)
Proteins: Structure, Function and Genetics
, vol.47
, Issue.4
, pp. 409-443
-
-
Halperin, I.1
Ma, B.2
Wolfson, H.3
Nussinov, R.4
-
22
-
-
6044238257
-
A docking score function for estimating ligand-protein interactions: Application to acetylcholinesterase inhibition
-
DOI 10.1021/jm049695v
-
Guo J., Hurley M.M., Wright J.B., and Lushington G.H. A docking score function for estimating ligand-protein interactions: application to acetylcholinesterase inhibition J. Med. Chem. 7 2004 5492 5500 (Pubitemid 39382797)
-
(2004)
Journal of Medicinal Chemistry
, vol.47
, Issue.22
, pp. 5492-5500
-
-
Guo, J.1
Hurley, M.M.2
Wright, J.B.3
Lushington, G.H.4
-
24
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project, Number 4
-
Collaborative Computational Project, Number 4 The CCP4 suite: programs for protein crystallography Acta Crystallogr., Sect. D: Biol. Crystallogr. 50 1994 760 763.
-
(1994)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.50
, pp. 760-763
-
-
-
25
-
-
14644420979
-
The Uppsala Electron-Density Server
-
DOI 10.1107/S0907444904013253
-
Kleywegt G.J., Harris M.R., Zou J.Y., Taylor T.C., Wählby A., and Jones T.A. The Uppsala Electron-Density Server Acta Crystallogr., Sect. D: Biol. Crystallogr. 60 2004 2240 2249 (Pubitemid 41742776)
-
(2004)
Acta Crystallographica Section D: Biological Crystallography
, vol.60
, Issue.12
, pp. 2240-2249
-
-
Kleywegt, G.J.1
Harris, M.R.2
Zou, J.-Y.3
Taylor, T.C.4
Wahlby, A.5
Jones, T.A.6
|