Assessment of automatic ligand building in ARP/wARP

Acta Crystallographica Section D: Biological Crystallography

Volumn 63, Issue 1, 2006, Pages 108-117

  Evrard, Guillaume X ^a   Langer, Gerrit G ^a   Perrakis, Anastassis ^b   Lamzin, Victor S ^a  

^a EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

^b NETHERLANDS CANCER INSTITUTE   (Netherlands)

Author keywords

ARP wARP; Ligand binding

Indexed keywords

LIGAND; PROTEIN;

ALGORITHM; ANIMAL; AUTOMATION; BINDING SITE; BIOLOGY; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER PROGRAM; CONFERENCE PAPER; CONFORMATION; HUMAN; METHODOLOGY; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN DATABASE; X RAY DIFFRACTION;

ALGORITHMS; ANIMALS; AUTOMATION; BINDING SITES; COMPUTATIONAL BIOLOGY; DATABASES, PROTEIN; HUMANS; LIGANDS; MODELS, MOLECULAR; MOLECULAR CONFORMATION; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEINS; SOFTWARE; X-RAY DIFFRACTION;

EID: 33846413234     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S0907444906023389     Document Type: Conference Paper

References (17)

1. Aishima, J., Russel, D. S., Guibas, L. J., Adams, P. D. & Brunger, A. T. (2005). Acta Cryst. D61, 1354-1363.
2. Arfken, G. (1985). Mathematical Methods for Physicists, 3rd ed, pp. 964-965. Orlando, FL, USA: Academic Press.
3. Collaborative Computational Project, Number 4 (1994). Acta Cryst. D50, 760-763.
4. Diller, D. J., Pohl, E., Redinbo, R. R., Hovey, B. T. & Hol, W. G. J. (1999). Proteins, 36, 512-525.
5. Emsley, P. & Cowtan, K. (2004). Acta Cryst. D60, 2126-2132.
6. Gasteiger, J., Rudolph, C. & Sadowski, J. (1990). Tetrahedron Comput. Methods, 3, 537-547.
7. Golovin, A., Dimitropoulos, D., Oldfield, T. J., Rachedi, A. & Henrick, K. (2005). Proteins, 58, 190-199.
8. Kleywegt, G. J., Harris, M. R., Zou, J.-Y., Taylor, T. C., Wählby, A. & Jones, T. A. (2004). Acta Cryst. D60, 2240-2249.
9. Kleywegt, G. J. & Jones, T. A. (1998). Acta Cryst. D54, 1119-1131.
10. Lamzin, V. S. & Wilson, K. S. (1993). Acta Cryst. D49, 129-147.
11. Morris, R. J., Najmanovich, R. J., Kahraman, A. & Thornton, J. M. (2005). Bioinformatics, 21, 2347-2355.
12. Murshudov, G. N., Vagin, A. A. & Dodson, E. J. (1997). Acta Cryst. D53, 240-255.
13. Oldfield, T. J. (2001). Acta Cryst. D57, 696-705.
14. Potterton, E., Briggs, P., Turkenburg, M. & Dodson, E. (2003). Acta Cryst. D59, 1131-1137.
15. Schindler, T., Bornmann, W., Pellicena, P., Miller, W. T., Clarkson, B. & Kuriyan, J. (2000). Science, 289, 1938-1942.
16. Terwilliger, T. C., Klei, H., Adams, P. D., Moriarty, N. W. & Cohn, J. D. (2006). Acta Cryst. D62, 915-922
17. Zwart, P. H., Langer, G. G. & Lamzin, V. S. (2004). Acta Cryst. D60, 2230-2239.